AT2G02570

Tudor domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002626
Physical Location & Seq
Reverse (-)
697943 .. 700975
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02570.4

Sequence Viewer

Length: 903 bp
ATGGTAGGAGGAGTAGAAGAATTGAGTATTGAACAGTTAGCTTCGAGTATCTCTACCTACAAAGAACAACTCGAACAGGTTAGGCAGCTTTTGTCAGAGGATCCTAGGAACTCGGAATATGCAGACATGGAAAAGGAGCTTAAAGAGGTGATTGCATTGACAGAGGAAGTTCTTGCAACTGCAAAGCAAAATGAGATTTCTCTATCAGATGCCGGAGTTAGTGCTGAAGCAACTCCTGGCTCACCCGATTTAGAGGGTGCTTGGGAAAAGACGGGTTTAAGGAATGACCCAATCCATGAGGGTAAGTTCCCTGTTGGAACTAAAGTTCAAGCTGTCTTTAGTGACGATGGCGAGTGGTATGATGCGACCATTGAGGCACATACTGCAAATGGCTATTTTGTTGCTTATGATGAGTGGGGAAACAAGGAAGAGGTGGATCCAGATAATGTGAGGCCAATCGAGCAAAATGCTATTGTCGAAGCTGAGAGATTAGCTCAAGCTACCAAAAATGCTCTCAAAAGAAAGATTGAGAAAGCTGCGAGTTCTGATTATCAGACAAAAACTCTACCAGCAAAGCTCAAAATCGATCCTAATGATCCCGAGGATGTAAAAATAGCTAAGCGTAAGAAGATACATGCTTTCAAATCCAAGGCAAGGTTTGAGCAACTCGAGGTTGTGCAGAACAAGAAACAGAATGATTGGCAACAGTTTCAGACGACTAAAGCCAAAACTAAAAAGGTAGGGTTCTTCACAGGGAGGAAGAAAGAGAGTATATTTAAATCACCTGAGGATCCATTTGGAAAAGTGGGTGTGACTGGAAGTGGGAAAGGTTTGACAGATTTCCAAAAGCGAGAGAAGCATCTTCATCTCAAGTCTGGTAATGCTGAGGGCACTGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SMN

Protein Analysis

300

Amino Acids

33.47

Weight (kDa)

5.43

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 8 cut(s) 95, 108, 431, 444, 581, 590, 785, 798
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 654
AgsI TTSAA 3 cut(s) 32, 329, 643
AjnI CCWGG 1 cut(s) 235
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AlwI GGATC 8 cut(s) 95, 108, 431, 444, 581, 590, 785, 798
Ama87I CYCGRG 2 cut(s) 599, 668
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 85, 536
AspA2I CCTAGG 1 cut(s) 104
AsuHPI GGTGA 3 cut(s) 160, 234, 774
AvaI CYCGRG 2 cut(s) 599, 668
AvrII CCTAGG 1 cut(s) 104
AxyI CCTNAGG 1 cut(s) 786
BaeGI GKGCMC 1 cut(s) 893
BamHI GGATCC 3 cut(s) 100, 436, 790
BbvCI CCTCAGC 1 cut(s) 885
BbvI GCAGC 2 cut(s) 97, 523
BccI CCATC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 1 cut(s) 237
BfaI CTAG 1 cut(s) 105
BisI GCNGC 2 cut(s) 86, 537
BlnI CCTAGG 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 2 cut(s) 87, 538
Bme1390I CCNGG 1 cut(s) 237
BmeT110I CYCGRG 2 cut(s) 599, 668
BmiI GGNNCC 3 cut(s) 102, 438, 792
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 3 cut(s) 199, 352, 868
BplI GAGNNNNNCTC 2 cut(s) 478, 510
Bpu10I CCTNAGC 1 cut(s) 885
Bpu1102I GCTNAGC 1 cut(s) 618
BpuEI CTTGAG 2 cut(s) 480, 854
Bsa29I ATCGAT 1 cut(s) 585
BsaJI CCNNGG 3 cut(s) 104, 600, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse1I ACTGG 1 cut(s) 820
Bse21I CCTNAGG 1 cut(s) 786
BseBI CCWGG 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 585
BseDI CCNNGG 3 cut(s) 104, 600, 648
BseGI GGATG 1 cut(s) 610
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMII CTCAG 3 cut(s) 474, 777, 876
BseNI ACTGG 1 cut(s) 820
BseRI GAGGAG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 893
BseXI GCAGC 2 cut(s) 97, 523
BsgI GTGCAG 1 cut(s) 698
BshFI GGCC 1 cut(s) 454
BshVI ATCGAT 1 cut(s) 585
BsiHKCI CYCGRG 2 cut(s) 599, 668
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 654
BsnI GGCC 1 cut(s) 454
BsoBI CYCGRG 2 cut(s) 599, 668
Bsp1286I GDGCHC 1 cut(s) 893
Bsp143I GATC 5 cut(s) 100, 436, 586, 595, 790
Bsp1720I GCTNAGC 1 cut(s) 618
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 3 cut(s) 475, 778, 877
BspDI ATCGAT 1 cut(s) 585
BspLI GGNNCC 3 cut(s) 102, 438, 792
BspPI GGATC 8 cut(s) 95, 108, 431, 444, 581, 590, 785, 798
BsrI ACTGG 1 cut(s) 820
BssECI CCNNGG 3 cut(s) 104, 600, 648
BssMI GATC 5 cut(s) 100, 436, 586, 595, 790
BssT1I CCWWGG 2 cut(s) 104, 648
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 36, 708
Bst6I CTCTTC 1 cut(s) 423
BstAPI GCANNNNNTGC 1 cut(s) 383
BstDEI CTNAG 4 cut(s) 483, 618, 786, 885
BstF5I GGATG 1 cut(s) 610
BstKTI GATC 5 cut(s) 103, 439, 589, 598, 793
BstMBI GATC 5 cut(s) 100, 436, 586, 595, 790
BstMWI GCNNNNNNNGC 3 cut(s) 383, 460, 856
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 893
BstV1I GCAGC 2 cut(s) 97, 523
BstX2I RGATCY 3 cut(s) 100, 436, 790
BstYI RGATCY 3 cut(s) 100, 436, 790
Bsu15I ATCGAT 1 cut(s) 585
Bsu36I CCTNAGG 1 cut(s) 786
BsuRI GGCC 1 cut(s) 454
BsuTUI ATCGAT 1 cut(s) 585
BtsCI GGATG 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 891
ClaI ATCGAT 1 cut(s) 585
CviAII CATG 3 cut(s) 127, 296, 635
DdeI CTNAG 4 cut(s) 483, 618, 786, 885
DpnI GATC 5 cut(s) 102, 438, 588, 597, 792
DpnII GATC 5 cut(s) 100, 436, 586, 595, 790
DraI TTTAAA 1 cut(s) 778
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco130I CCWWGG 2 cut(s) 104, 648
Eco57I CTGAAG 1 cut(s) 246
Eco81I CCTNAGG 1 cut(s) 786
Eco88I CYCGRG 2 cut(s) 599, 668
EcoRII CCWGG 1 cut(s) 235
EcoT14I CCWWGG 2 cut(s) 104, 648
ErhI CCWWGG 2 cut(s) 104, 648
FaeI CATG 3 cut(s) 130, 299, 638
FaiI YATR 8 cut(s) 120, 128, 297, 360, 381, 408, 636, 773
FatI CATG 3 cut(s) 126, 295, 634
Fnu4HI GCNGC 2 cut(s) 86, 537
FokI GGATG 1 cut(s) 617
Fsp4HI GCNGC 2 cut(s) 86, 537
FspBI CTAG 1 cut(s) 105
GluI GCNGC 2 cut(s) 86, 537
HaeIII GGCC 1 cut(s) 454
HapII CCGG 1 cut(s) 213
Hin1II CATG 3 cut(s) 130, 299, 638
HpaII CCGG 1 cut(s) 213
HphI GGTGA 3 cut(s) 160, 234, 774
Hpy188I TCNGA 6 cut(s) 97, 115, 208, 547, 555, 714
Hpy188III TCNNGA 2 cut(s) 440, 599
HpyCH4III ACNGT 2 cut(s) 36, 708
HpyCH4V TGCA 6 cut(s) 122, 155, 176, 182, 386, 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 460, 856
HpyF3I CTNAG 4 cut(s) 483, 618, 786, 885
Hsp92II CATG 3 cut(s) 130, 299, 638
Kzo9I GATC 5 cut(s) 100, 436, 586, 595, 790
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 2 cut(s) 97, 523
LweI GCATC 3 cut(s) 199, 352, 868
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 341, 811
MalI GATC 5 cut(s) 102, 438, 588, 597, 792
MboI GATC 5 cut(s) 100, 436, 586, 595, 790
MboII GAAGA 6 cut(s) 29, 440, 640, 739, 772, 854
MflI RGATCY 3 cut(s) 100, 436, 790
MhlI GDGCHC 1 cut(s) 893
MluCI AATT 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 295
MseI TTAA 3 cut(s) 141, 278, 777
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 3 cut(s) 383, 460, 856
NdeII GATC 5 cut(s) 100, 436, 586, 595, 790
NlaIII CATG 3 cut(s) 130, 299, 638
NlaIV GGNNCC 3 cut(s) 102, 438, 792
NmuCI GTSAC 2 cut(s) 341, 811
NspI RCATGY 1 cut(s) 638
PaeR7I CTCGAG 1 cut(s) 668
PkrI GCNGC 2 cut(s) 87, 538
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 3 cut(s) 102, 438, 792
PspXI VCTCGAGB 1 cut(s) 668
PsuI RGATCY 3 cut(s) 100, 436, 790
SaqAI TTAA 3 cut(s) 141, 278, 777
SatI GCNGC 2 cut(s) 86, 537
Sau3AI GATC 5 cut(s) 100, 436, 586, 595, 790
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 1 cut(s) 893
SfaNI GCATC 3 cut(s) 199, 352, 868
Sfr274I CTCGAG 1 cut(s) 668
SlaI CTCGAG 1 cut(s) 668
SmiI ATTTAAAT 1 cut(s) 778
SmlI CTYRAG 3 cut(s) 495, 668, 869
SmoI CTYRAG 3 cut(s) 495, 668, 869
Sse9I AATT 1 cut(s) 20
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 235
StyI CCWWGG 2 cut(s) 104, 648
SwaI ATTTAAAT 1 cut(s) 778
TaaI ACNGT 2 cut(s) 36, 708
TaqI TCGA 6 cut(s) 44, 72, 459, 477, 585, 669
TasI AATT 1 cut(s) 20
Tru1I TTAA 3 cut(s) 141, 278, 777
Tru9I TTAA 3 cut(s) 141, 278, 777
TscAI CASTG 1 cut(s) 898
TseFI GTSAC 2 cut(s) 341, 811
TseI GCWGC 2 cut(s) 85, 536
Tsp45I GTSAC 2 cut(s) 341, 811
TspDTI ATGAA 1 cut(s) 854
TspRI CASTG 1 cut(s) 898
XceI RCATGY 1 cut(s) 638
XhoI CTCGAG 1 cut(s) 668
XmaJI CCTAGG 1 cut(s) 104
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.