Rh7DG325900

Survival of motor neuron-related-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002626
Physical Location & Seq
Reverse (-)
39327596 .. 39333180
5585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG325900.1

Sequence Viewer

Length: 702 bp
ATGCAGGTAATAGCCATGACAGAAGAACTACTTGCAACTGCCAAGCAAAATCAGAATTTTGGATTAGAAATTGGAACAAGGGGTAGTGCGTCTCCTAGTTTTCCCCAGTCTCAGAAGAGTGAAAACGATGCAGGGAGCATTTCTGATTATCATGACAAATTTGCTCCTGGTACAAAAGTTCAAGCTGTTTGGAGTGAAGATGGGGAGTGGTATGAAGCAACAATTGATTCTCTTACTCCAAATGGGTATTATGTTACATATGATGGCTGGGGGAATAAAGAAGAGGTGGATCCAGCCAATGTAAGGCCAATTCAAGAAGGGGCTGTCAATGCATTGTTGGAAGCGGAAAAAGTTGCTGAAGCTACAAAACAAGCAATCAAAAGGAAAATTGCACAAGCTGCTTCTGTTGACTTCCAATCACGAAGCCTACCGGCAAAGCTTCGTATAGAACCGGATGATCCTGAGGATGTGAAAATTGCTAAACGCAAGAAGATACATGCTTTTAAGTCAAAAATGAGGATGGAGCAGTTGGAAGTCACTCAGAACAAGCGTCAAAATGCTTGGCAGCAGTTCCAAACTACCAAAGGCAAGACTAAGAAGGTAAGTTGGTATTTATGCGTTTCATTCTGCTTGCAAAATTGCTCTGATCTTTATCAAGTTACAGTAATCTACAGTTACCATTTTATTTATGCACGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SMN

Protein Analysis

233

Amino Acids

26.37

Weight (kDa)

7.64

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMN_Tudor PF06003 56 - 102 1.7e-06 Survival motor neuron protein (SMN), Tudor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 344
AclWI GGATC 3 cut(s) 284, 297, 452
AcsI RAATTY 2 cut(s) 55, 158
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 2 cut(s) 182, 314
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 4 cut(s) 185, 362, 398, 439
AluI AGCT 4 cut(s) 185, 362, 398, 439
Alw26I GTCTC 2 cut(s) 96, 114
AlwI GGATC 3 cut(s) 284, 297, 452
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 398, 565
ApoI RAATTY 2 cut(s) 55, 158
AxyI CCTNAGG 1 cut(s) 462
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BamHI GGATCC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 385, 577
BccI CCATC 3 cut(s) 194, 257, 514
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 96, 114
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 670
BisI GCNGC 2 cut(s) 399, 566
BlsI GCNGC 2 cut(s) 400, 567
Bme1390I CCNGG 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 695
BsaBI GATNNNNATC 1 cut(s) 651
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 3 cut(s) 460, 472, 525
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 1 cut(s) 303
BseMII CTCAG 3 cut(s) 125, 453, 554
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 385, 577
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 1 cut(s) 307
BsiSI CCGG 2 cut(s) 431, 452
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 96, 114
BsmBI CGTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 307
Bsp143I GATC 3 cut(s) 289, 457, 646
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 3 cut(s) 124, 454, 553
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 3 cut(s) 284, 297, 452
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 430
BssMI GATC 3 cut(s) 289, 457, 646
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 664, 674
Bst6I CTCTTC 2 cut(s) 110, 276
BstAPI GCANNNNNTGC 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 695
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 4 cut(s) 111, 462, 540, 594
BstF5I GGATG 3 cut(s) 460, 472, 525
BstKTI GATC 3 cut(s) 292, 460, 649
BstMAI GTCTC 2 cut(s) 96, 114
BstMBI GATC 3 cut(s) 289, 457, 646
BstMWI GCNNNNNNNGC 2 cut(s) 329, 398
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 670
BstV1I GCAGC 2 cut(s) 385, 577
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 3 cut(s) 460, 472, 525
Cac8I GCNNGC 1 cut(s) 632
CciI TCATGA 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 430
CseI GACGC 2 cut(s) 78, 539
Csp6I GTAC 1 cut(s) 171
CviAII CATG 3 cut(s) 16, 152, 497
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 4 cut(s) 111, 462, 540, 594
DpnI GATC 3 cut(s) 291, 459, 648
DpnII GATC 3 cut(s) 289, 457, 646
Eam1104I CTCTTC 2 cut(s) 110, 276
EarI CTCTTC 2 cut(s) 110, 276
Eco57I CTGAAG 1 cut(s) 378
Eco81I CCTNAGG 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 3 cut(s) 19, 155, 500
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 3 cut(s) 15, 151, 496
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 399, 566
FokI GGATG 3 cut(s) 467, 479, 532
Fsp4HI GCNGC 2 cut(s) 399, 566
FspBI CTAG 1 cut(s) 96
GluI GCNGC 2 cut(s) 399, 566
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 307
HapII CCGG 2 cut(s) 431, 452
HgaI GACGC 2 cut(s) 78, 539
Hin1II CATG 3 cut(s) 19, 155, 500
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 1 cut(s) 227
HpaII CCGG 2 cut(s) 431, 452
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 5 cut(s) 54, 114, 145, 543, 646
Hpy188III TCNNGA 4 cut(s) 152, 314, 420, 461
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 2 cut(s) 311, 592
HpyCH4III ACNGT 2 cut(s) 664, 674
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 7 cut(s) 4, 35, 131, 332, 392, 634, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 398
HpyF3I CTNAG 4 cut(s) 111, 462, 540, 594
HpySE526I ACGT 1 cut(s) 694
Hsp92II CATG 3 cut(s) 19, 155, 500
Kzo9I GATC 3 cut(s) 289, 457, 646
LmnI GCTCC 3 cut(s) 135, 169, 523
LpnPI CCDG 9 cut(s) 117, 119, 153, 180, 253, 306, 444, 465, 474
Lsp1109I GCAGC 2 cut(s) 385, 577
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 4 cut(s) 253, 535, 658, 674
MalI GATC 3 cut(s) 291, 459, 648
MboI GATC 3 cut(s) 289, 457, 646
MboII GAAGA 5 cut(s) 35, 127, 209, 293, 502
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 289
MluCI AATT 8 cut(s) 55, 69, 158, 222, 309, 387, 474, 637
MmeI TCCRAC 2 cut(s) 318, 510
MnlI CCTC 3 cut(s) 277, 457, 510
Mph1103I ATGCAT 1 cut(s) 334
MseI TTAA 1 cut(s) 504
MspI CCGG 2 cut(s) 431, 452
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 329, 398
NdeI CATATG 1 cut(s) 259
NdeII GATC 3 cut(s) 289, 457, 646
NlaIII CATG 3 cut(s) 19, 155, 500
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 535
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 500
PagI TCATGA 1 cut(s) 151
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 400, 567
Ppu21I YACGTR 1 cut(s) 695
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 291
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 2 cut(s) 399, 566
Sau3AI GATC 3 cut(s) 289, 457, 646
ScrFI CCNGG 1 cut(s) 168
SetI ASST 8 cut(s) 9, 187, 288, 364, 400, 441, 603, 697
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 670
Sse9I AATT 8 cut(s) 55, 69, 158, 222, 309, 387, 474, 637
SsiI CCGC 1 cut(s) 344
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 664, 674
TaiI ACGT 1 cut(s) 697
TasI AATT 8 cut(s) 55, 69, 158, 222, 309, 387, 474, 637
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 2 cut(s) 398, 565
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 2 cut(s) 228, 612
XapI RAATTY 2 cut(s) 55, 158
XceI RCATGY 1 cut(s) 500
XspI CTAG 1 cut(s) 96
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.