Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023113.1

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3836

Gene Structure 3836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023113.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

gtcaaggaggttttagcccatgaccctggaaactccgagtatgctgatgtggaaagagagctccatgaggtaatagccatgacagaagaactacttgcaactgccaagcaaaatcagaattttggattagaaattggaacaaggggtagtgcgtctcctagttttccccagtctcagaagagtgaaaacgatgcagggagcatttctgattatcatgacaaatttgctcctggtacaaaagttcaagctgtttggagtgaagatggggagtggtatgaagcaacaattgattctcttactccaaatgggtattatgttacatatgatggctgggggaataaagaagaggtggatccagccaatgtaaggccaattcaagaaggggctgtcaatgcattgttggaagcggaaaaagttgctgaagctacaaaacaagcaatcaaaaggaaaattgcacaagctgcttctgttgacttccaatcacgaagcctaccggcaaagcttcgtatagaaccggatgatcctgaggatgtgaaaattgccaaacgcaagaagatacatgcttttaagtcaaaaatgaggatggagcagttggaagtcactcagaacaagcgtcaaaatgcttggcagcagttccaaactaccaaaggcaagactaagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

221

Amino Acids

24.75

Weight (kDa)

5.71

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	407
AclWI	GGATC	3 cut(s)	347, 360, 515
AcsI	RAATTY	2 cut(s)	118, 221
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	245, 377
AjnI	CCWGG	2 cut(s)	25, 229
AluBI	AGCT	5 cut(s)	61, 248, 425, 461, 502
AluI	AGCT	5 cut(s)	61, 248, 425, 461, 502
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	159, 177
AlwI	GGATC	3 cut(s)	347, 360, 515
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	461, 628
ApoI	RAATTY	2 cut(s)	118, 221
AxyI	CCTNAGG	1 cut(s)	525
BaeI	ACNNNNGTAYC	2 cut(s)	225, 258
BamHI	GGATCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	448, 640
BccI	CCATC	3 cut(s)	257, 320, 577
BciT130I	CCWGG	2 cut(s)	27, 231
BcoDI	GTCTC	2 cut(s)	159, 177
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	462, 629
BlsI	GCNGC	2 cut(s)	463, 630
Bme1390I	CCNGG	2 cut(s)	27, 231
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	27, 231
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	1 cut(s)	169
Bse21I	CCTNAGG	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	27, 231
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	3 cut(s)	523, 535, 588
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	3 cut(s)	188, 516, 617
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	448, 640
BseYI	CCCAGC	1 cut(s)	330
BshFI	GGCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	494, 515
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	2 cut(s)	159, 177
BsmBI	CGTCTC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	352, 520
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	3 cut(s)	187, 517, 616
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	3 cut(s)	347, 360, 515
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	352, 520
Bst2UI	CCWGG	2 cut(s)	27, 231
Bst6I	CTCTTC	2 cut(s)	173, 339
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstDEI	CTNAG	4 cut(s)	174, 525, 603, 657
BstF5I	GGATG	3 cut(s)	523, 535, 588
BstKTI	GATC	2 cut(s)	355, 523
BstMAI	GTCTC	2 cut(s)	159, 177
BstMBI	GATC	2 cut(s)	352, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 461
BstNI	CCWGG	2 cut(s)	27, 231
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	25, 229
BstV1I	GCAGC	2 cut(s)	448, 640
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	352
Bsu36I	CCTNAGG	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	523, 535, 588
CciI	TCATGA	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	493
CseI	GACGC	2 cut(s)	141, 602
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	5 cut(s)	20, 65, 79, 215, 560
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	4 cut(s)	174, 525, 603, 657
DpnI	GATC	2 cut(s)	354, 522
DpnII	GATC	2 cut(s)	352, 520
Eam1104I	CTCTTC	2 cut(s)	173, 339
EarI	CTCTTC	2 cut(s)	173, 339
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	441
Eco81I	CCTNAGG	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	25, 229
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	5 cut(s)	23, 68, 82, 218, 563
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	5 cut(s)	19, 64, 78, 214, 559
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	462, 629
FokI	GGATG	3 cut(s)	530, 542, 595
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	462, 629
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	2 cut(s)	462, 629
GsaI	CCCAGC	1 cut(s)	334
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	2 cut(s)	494, 515
HgaI	GACGC	2 cut(s)	141, 602
Hin1II	CATG	5 cut(s)	23, 68, 82, 218, 563
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	2 cut(s)	494, 515
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	5 cut(s)	37, 117, 177, 208, 606
Hpy188III	TCNNGA	4 cut(s)	215, 377, 483, 524
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	374
HpyCH4V	TGCA	4 cut(s)	98, 194, 395, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 461
HpyF3I	CTNAG	4 cut(s)	174, 525, 603, 657
Hsp92II	CATG	5 cut(s)	23, 68, 82, 218, 563
Kzo9I	GATC	2 cut(s)	352, 520
LmnI	GCTCC	4 cut(s)	66, 198, 232, 586
Lsp1109I	GCAGC	2 cut(s)	448, 640
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	316, 598
MalI	GATC	2 cut(s)	354, 522
MboI	GATC	2 cut(s)	352, 520
MboII	GAAGA	5 cut(s)	98, 190, 272, 356, 565
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	7 cut(s)	118, 132, 221, 285, 372, 450, 537
MmeI	TCCRAC	2 cut(s)	381, 573
MnlI	CCTC	4 cut(s)	61, 340, 520, 573
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	1 cut(s)	567
MspI	CCGG	2 cut(s)	494, 515
MspR9I	CCNGG	2 cut(s)	27, 231
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	27, 231
MwoI	GCNNNNNNNGC	2 cut(s)	392, 461
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	352, 520
NlaIII	CATG	5 cut(s)	23, 68, 82, 218, 563
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	598
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	1 cut(s)	563
PagI	TCATGA	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	463, 630
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	25, 229
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	2 cut(s)	25, 229
PspN4I	GGNNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	2 cut(s)	462, 629
Sau3AI	GATC	2 cut(s)	352, 520
ScrFI	CCNGG	2 cut(s)	27, 231
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	8 cut(s)	12, 63, 72, 250, 351, 427, 463, 504
SfaNI	GCATC	1 cut(s)	181
Sse9I	AATT	7 cut(s)	118, 132, 221, 285, 372, 450, 537
SsiI	CCGC	1 cut(s)	407
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	25, 229
TasI	AATT	7 cut(s)	118, 132, 221, 285, 372, 450, 537
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	2 cut(s)	461, 628
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	1 cut(s)	291
XapI	RAATTY	2 cut(s)	118, 221
XceI	RCATGY	1 cut(s)	563
XspI	CTAG	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.