Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Reverse (-)

38783578 .. 38787513

Gene Structure 3936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g39090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAAGGAGAAGGAGGAGAAGAGCTCAGCATACAGGAGCTGACCTCCAGTCTCTCGACGTACAAAGATCAGCTTCACCAGGTAAAGGAGCTTTTAGCTGATGATCCTGCAAACTCTGAGTATGCTGACATGGCAAGAGAGCTCAATGAGGTAATTGCTCTGACAGAAGAACTACTTGCAACTGCAAAGCAAAATCAGAATTCCGGATTAGATTTCGGGACAAGTGATAGTGCATCACCTAGTTTGCCTCAGACTCAGAGGAATGAAAATGATTCAGGGAATATTTCCGTTTATCATGACAAGTTTCCTGTTGGCACAAAAGTTCAAGCTGTTTGGAGTGAAGATGGGGAGTGGTATGATGCCACGATCGAGTCTCTTACTCCGAATGGGTACTTTGTTACTTATGAGAGCTGGGGGAATAAAGAAGAGGTGGATCGAGACAATGTCAGACCAATTCAAGAAGGGGCTGTCAATGCATTGCTGGAAGCTGAAAGGGTTGCTGAGGCCACAAAACAAGCACTCAAAAGGAAGATTGCGCAAGCTGCTTCTGTTGATTTCCAATCACGAAGCTTACCAGCAAAACTTCGTATAGAACCTGATCGATCCAGAGGATGTGAAAATCACCAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

211

Amino Acids

23.28

Weight (kDa)

4.5

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	537
AccIII	TCCGGA	1 cut(s)	203
AclWI	GGATC	3 cut(s)	98, 441, 597
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	2 cut(s)	62, 392
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	326, 458
AhdI	GACNNNNNGTC	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	78
Alw21I	GWGCWC	2 cut(s)	27, 144
Alw26I	GTCTC	3 cut(s)	56, 378, 432
AlwI	GGATC	3 cut(s)	98, 441, 597
AlwNI	CAGNNNCTG	1 cut(s)	40
Aor13HI	TCCGGA	1 cut(s)	203
AoxI	GGCC	1 cut(s)	504
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	538
AsuHPI	GGTGA	3 cut(s)	68, 228, 614
BanII	GRGCYC	2 cut(s)	27, 144
Bbv12I	GWGCWC	2 cut(s)	27, 144
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	3 cut(s)	56, 378, 432
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	543
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	80
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	242, 349
BplI	GAGNNNNNCTC	4 cut(s)	9, 41, 29, 61
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	601
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	476
BseAI	TCCGGA	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	601
BseGI	GGATG	1 cut(s)	617
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	5 cut(s)	40, 108, 263, 269, 492
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	529
BseYI	CCCAGC	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	506
BshVI	ATCGAT	1 cut(s)	601
BsiEI	CGRYCG	1 cut(s)	369
BsiHKAI	GWGCWC	2 cut(s)	27, 144
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	3 cut(s)	56, 378, 432
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	506
Bsp1286I	GDGCHC	2 cut(s)	27, 144
Bsp13I	TCCGGA	1 cut(s)	203
Bsp143I	GATC	6 cut(s)	67, 103, 366, 433, 598, 602
Bsp1720I	GCTNAGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	506
BspCNI	CTCAG	5 cut(s)	39, 109, 262, 268, 493
BspDI	ATCGAT	1 cut(s)	601
BspEI	TCCGGA	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	295
BspPI	GGATC	3 cut(s)	98, 441, 597
BspQI	GCTCTTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	48
BssMI	GATC	6 cut(s)	67, 103, 366, 433, 598, 602
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	15, 420
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	5 cut(s)	26, 117, 249, 255, 501
BstF5I	GGATG	1 cut(s)	617
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	6 cut(s)	70, 106, 369, 436, 601, 605
BstMAI	GTCTC	3 cut(s)	56, 378, 432
BstMBI	GATC	6 cut(s)	67, 103, 366, 433, 598, 602
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 473, 542
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	529
Bsu15I	ATCGAT	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	506
BsuTUI	ATCGAT	1 cut(s)	601
BtsCI	GGATG	1 cut(s)	617
Cac8I	GCNNGC	1 cut(s)	540
CaiI	CAGNNNCTG	1 cut(s)	40
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	1 cut(s)	538
ClaI	ATCGAT	1 cut(s)	601
CsiI	ACCWGGT	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	61, 391
CviAII	CATG	2 cut(s)	130, 296
CviQI	GTAC	2 cut(s)	61, 391
DdeI	CTNAG	5 cut(s)	26, 117, 249, 255, 501
DpnI	GATC	6 cut(s)	69, 105, 368, 435, 600, 604
DpnII	GATC	6 cut(s)	67, 103, 366, 433, 598, 602
DriI	GACNNNNNGTC	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	15, 420
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	2 cut(s)	15, 420
Ecl136II	GAGCTC	2 cut(s)	25, 142
Eco24I	GRGCYC	2 cut(s)	27, 144
Eco53kI	GAGCTC	2 cut(s)	25, 142
EcoICRI	GAGCTC	2 cut(s)	25, 142
EcoRI	GAATTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	2 cut(s)	27, 144
FaeI	CATG	2 cut(s)	133, 299
FaiI	YATR	7 cut(s)	32, 123, 131, 297, 357, 405, 590
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 159, 191
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	129, 295
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	1 cut(s)	624
FriOI	GRGCYC	2 cut(s)	27, 144
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	1 cut(s)	240
FspI	TGCGCA	1 cut(s)	537
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	543
GsaI	CCCAGC	1 cut(s)	415
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	506
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	2 cut(s)	133, 299
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HindIII	AAGCTT	1 cut(s)	568
HinfI	GANTC	3 cut(s)	253, 272, 371
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	3 cut(s)	68, 228, 614
Hpy188I	TCNGA	7 cut(s)	118, 162, 198, 252, 258, 384, 449
Hpy188III	TCNNGA	8 cut(s)	55, 204, 217, 296, 437, 458, 564, 606
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	5, 455
HpyCH4IV	ACGT	2 cut(s)	59, 629
HpyCH4V	TGCA	5 cut(s)	110, 179, 185, 233, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 473, 542
HpyF3I	CTNAG	5 cut(s)	26, 117, 249, 255, 501
HpySE526I	ACGT	2 cut(s)	59, 629
Hsp92II	CATG	2 cut(s)	133, 299
HspAI	GCGC	1 cut(s)	536
Kpn2I	TCCGGA	1 cut(s)	203
Kzo9I	GATC	6 cut(s)	67, 103, 366, 433, 598, 602
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	2 cut(s)	37, 88
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	2 cut(s)	242, 349
MabI	ACCWGGT	1 cut(s)	78
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	59, 629
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	6 cut(s)	69, 105, 368, 435, 600, 604
MboI	GATC	6 cut(s)	67, 103, 366, 433, 598, 602
MboII	GAAGA	5 cut(s)	32, 179, 353, 437, 541
MhlI	GDGCHC	2 cut(s)	27, 144
MluCI	AATT	3 cut(s)	153, 199, 453
MlyI	GAGTC	2 cut(s)	247, 380
MnlI	CCTC	8 cut(s)	8, 55, 142, 252, 258, 421, 496, 602
Mph1103I	ATGCAT	1 cut(s)	478
MroI	TCCGGA	1 cut(s)	203
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	131, 473, 542
NdeII	GATC	6 cut(s)	67, 103, 366, 433, 598, 602
NlaIII	CATG	2 cut(s)	133, 299
NsbI	TGCGCA	1 cut(s)	537
NsiI	ATGCAT	1 cut(s)	478
PagI	TCATGA	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	272
PflFI	GACNNNGTC	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	544
Ple19I	CGATCG	1 cut(s)	369
PleI	GAGTC	2 cut(s)	247, 379
PpsI	GAGTC	2 cut(s)	247, 379
Psp124BI	GAGCTC	2 cut(s)	27, 144
Psp6I	CCWGG	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	443
PvuI	CGATCG	1 cut(s)	369
RsaI	GTAC	2 cut(s)	62, 392
RsaNI	GTAC	2 cut(s)	61, 391
SacI	GAGCTC	2 cut(s)	27, 144
SapI	GCTCTTC	1 cut(s)	15
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	6 cut(s)	67, 103, 366, 433, 598, 602
SchI	GAGTC	2 cut(s)	247, 380
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	27, 144
SexAI	ACCWGGT	1 cut(s)	78
SfaNI	GCATC	2 cut(s)	242, 349
Sse9I	AATT	3 cut(s)	153, 199, 453
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	2 cut(s)	27, 144
StyD4I	CCNGG	1 cut(s)	78
TaiI	ACGT	2 cut(s)	62, 632
TaqI	TCGA	4 cut(s)	56, 369, 436, 601
TasI	AATT	3 cut(s)	153, 199, 453
TfiI	GAWTC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	199
XspI	CTAG	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.