Rh1BG165500

Survival of motor neuron-related-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002626
Physical Location & Seq
Forward (+)
26562903 .. 26568387
5485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG165500.1

Sequence Viewer

Length: 732 bp
ATGGATGCATGTCACTTCTCTTTCATTCATCTGCAGGTAATAGCCATGACAGAAGAACTACTTGCAACTGCCAAGCAAAATCAGAATTTTGGATTAGAAATTGGAACAAGGGGTAGTGCGTCTCCTAGTTTTCCCCAGTCTCAGAAGAGTGAAAACGATGCAGGGAGCATTTCTGATTATCATGACAAATTTGCTCCTGGTACAAAAGTTCAAGCTGTTTGGAGTGAAGATGGGGAGTGGTATGAAGCAACAATTGATTCTCTTACTCCAAATGGGTATTATGTTACATATGATGGCTGGGGGAATAAAGAAGAGGTGGATCCAGCCAATGTAAGGCCAATTCAAGAAGGGGCTGTCAATGCATTGTTGGAAGCGGAAAAAGTTGCTGAAGCTACAAAACAAGCAATCAAAAGGAAAATTGCACAAGCTGCTTCTGTTGACTTCCAATCACGAAGCCTACCGGCAAAGCTTCGTATAGAACCGGATGATCCTGAGGATGTGAAAATTGCCAAACGCAAGAAGATACATGCTTTTAAGTCGAAAATGAGGATGGAGCAGTTGGAAGTCACTCAGAACAAGCGTCAAAATGCTTGGCAGCAGTTCCAAACTACCAAAGGCAAGACTAAGAAGGTAAGTTGGTATTTATGCGTTTCATTCTGCTTGCAAAATTGCCCTGATCTTTATCAAGTTACAGTAATCTACAGTTACCATTTTATTTATGCACATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SMN

Protein Analysis

243

Amino Acids

27.52

Weight (kDa)

6.6

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMN_Tudor PF06003 66 - 112 1.8e-06 Survival motor neuron protein (SMN), Tudor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
AciI CCGC 1 cut(s) 374
AclWI GGATC 3 cut(s) 314, 327, 482
AcsI RAATTY 2 cut(s) 85, 188
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 333
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 2 cut(s) 212, 344
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 4 cut(s) 215, 392, 428, 469
AluI AGCT 4 cut(s) 215, 392, 428, 469
Alw26I GTCTC 2 cut(s) 126, 144
AlwI GGATC 3 cut(s) 314, 327, 482
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 428, 595
ApoI RAATTY 2 cut(s) 85, 188
AxyI CCTNAGG 1 cut(s) 492
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BamHI GGATCC 1 cut(s) 319
BbvI GCAGC 2 cut(s) 415, 607
BccI CCATC 3 cut(s) 224, 287, 544
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 126, 144
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 2 cut(s) 32, 700
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 2 cut(s) 429, 596
BlsI GCNGC 2 cut(s) 430, 597
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 681
BsaWI WCCGGW 1 cut(s) 481
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse118I RCCGGY 1 cut(s) 460
Bse1I ACTGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 492
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 4 cut(s) 10, 490, 502, 555
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMII CTCAG 3 cut(s) 155, 483, 584
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 415, 607
BseYI CCCAGC 1 cut(s) 297
BshFI GGCC 1 cut(s) 337
BsiSI CCGG 2 cut(s) 461, 482
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 2 cut(s) 126, 144
BsmBI CGTCTC 1 cut(s) 126
BsnI GGCC 1 cut(s) 337
Bsp143I GATC 3 cut(s) 319, 487, 676
BspACI CCGC 1 cut(s) 374
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 3 cut(s) 154, 484, 583
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 321
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 3 cut(s) 314, 327, 482
BsrFI RCCGGY 1 cut(s) 460
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 460
BssMI GATC 3 cut(s) 319, 487, 676
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 694, 704
Bst6I CTCTTC 2 cut(s) 140, 306
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 662
BstDEI CTNAG 4 cut(s) 141, 492, 570, 624
BstF5I GGATG 4 cut(s) 10, 490, 502, 555
BstKTI GATC 3 cut(s) 322, 490, 679
BstMAI GTCTC 2 cut(s) 126, 144
BstMBI GATC 3 cut(s) 319, 487, 676
BstMWI GCNNNNNNNGC 2 cut(s) 359, 428
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 3 cut(s) 12, 530, 728
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 2 cut(s) 32, 700
BstV1I GCAGC 2 cut(s) 415, 607
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 492
BsuRI GGCC 1 cut(s) 337
BtsCI GGATG 4 cut(s) 10, 490, 502, 555
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 662
CciI TCATGA 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 460
CseI GACGC 2 cut(s) 108, 569
Csp6I GTAC 1 cut(s) 201
CviAII CATG 5 cut(s) 9, 46, 182, 527, 725
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 4 cut(s) 141, 492, 570, 624
DpnI GATC 3 cut(s) 321, 489, 678
DpnII GATC 3 cut(s) 319, 487, 676
Eam1104I CTCTTC 2 cut(s) 140, 306
EarI CTCTTC 2 cut(s) 140, 306
Eco57I CTGAAG 1 cut(s) 408
Eco81I CCTNAGG 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 196
EcoT22I ATGCAT 2 cut(s) 10, 364
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 5 cut(s) 12, 49, 185, 530, 728
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FatI CATG 5 cut(s) 8, 45, 181, 526, 724
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 429, 596
FokI GGATG 4 cut(s) 17, 497, 509, 562
Fsp4HI GCNGC 2 cut(s) 429, 596
FspBI CTAG 1 cut(s) 126
GluI GCNGC 2 cut(s) 429, 596
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 337
HapII CCGG 2 cut(s) 461, 482
HgaI GACGC 2 cut(s) 108, 569
Hin1II CATG 5 cut(s) 12, 49, 185, 530, 728
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 1 cut(s) 257
HpaII CCGG 2 cut(s) 461, 482
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 4 cut(s) 84, 144, 175, 573
Hpy188III TCNNGA 4 cut(s) 182, 344, 450, 491
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 341, 622
HpyCH4III ACNGT 2 cut(s) 694, 704
HpyCH4V TGCA 8 cut(s) 8, 34, 65, 161, 362, 422, 664, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 428
HpyF3I CTNAG 4 cut(s) 141, 492, 570, 624
Hsp92II CATG 5 cut(s) 12, 49, 185, 530, 728
Kzo9I GATC 3 cut(s) 319, 487, 676
LmnI GCTCC 3 cut(s) 165, 199, 553
Lsp1109I GCAGC 2 cut(s) 415, 607
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 5 cut(s) 11, 283, 565, 688, 704
MalI GATC 3 cut(s) 321, 489, 678
MboI GATC 3 cut(s) 319, 487, 676
MboII GAAGA 5 cut(s) 65, 157, 239, 323, 532
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 319
MluCI AATT 8 cut(s) 85, 99, 188, 252, 339, 417, 504, 667
MmeI TCCRAC 2 cut(s) 348, 540
MnlI CCTC 3 cut(s) 307, 487, 540
Mph1103I ATGCAT 2 cut(s) 10, 364
MseI TTAA 1 cut(s) 534
MspI CCGG 2 cut(s) 461, 482
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 359, 428
NdeI CATATG 1 cut(s) 289
NdeII GATC 3 cut(s) 319, 487, 676
NlaIII CATG 5 cut(s) 12, 49, 185, 530, 728
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 2 cut(s) 11, 565
NsiI ATGCAT 2 cut(s) 10, 364
NspI RCATGY 3 cut(s) 12, 530, 728
PagI TCATGA 1 cut(s) 181
PciI ACATGT 1 cut(s) 724
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 430, 597
PscI ACATGT 1 cut(s) 724
Psp6I CCWGG 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 321
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 2 cut(s) 429, 596
Sau3AI GATC 3 cut(s) 319, 487, 676
ScrFI CCNGG 1 cut(s) 198
SetI ASST 7 cut(s) 39, 217, 318, 394, 430, 471, 633
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 2 cut(s) 32, 700
Sse9I AATT 8 cut(s) 85, 99, 188, 252, 339, 417, 504, 667
SsiI CCGC 1 cut(s) 374
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 694, 704
TaqI TCGA 1 cut(s) 539
TasI AATT 8 cut(s) 85, 99, 188, 252, 339, 417, 504, 667
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 2 cut(s) 11, 565
TseI GCWGC 2 cut(s) 428, 595
Tsp45I GTSAC 2 cut(s) 11, 565
TspDTI ATGAA 4 cut(s) 13, 17, 258, 642
XapI RAATTY 2 cut(s) 85, 188
XceI RCATGY 3 cut(s) 12, 530, 728
XspI CTAG 1 cut(s) 126
Zsp2I ATGCAT 2 cut(s) 10, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.