Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Reverse (-)

47545005 .. 47553523

Gene Structure 8519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G585700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAAGGAGAAGGAGGAGAAGAGCTAAGCATAGAAGAACTGGCCTCCAATCTTTCAACATACAAAGATCAGCTTCACCAGGTAAAGGAGCTTTTAGCTGATGATCCTGTAAACTCTGAGTATGCTGACATGGAAAGAGAGCTCAATGAGGTAATTGCTCTGACAGAAGAACTACTTGCAACTGCAAAGCAAAATCAGAGTTCTGGAATAGATTTTGGGACAAGTGATAGTGCATCTCCTAGTTTACCCCAGACTCAGAGGAATGAAAATGATTCAGGGAGCATTTCCGACTATCATGACAAGTTTCCTCCTGGTACAAAAGTTCAAGCTGTTTGGAGTGAAGATGGGGAGTGGTATGATGCTACAATCGAGTCTCTCACTCCAAATGGGTATTTTGTTACTTATGAGGGCTGGGGGAATAGAGAAGAGGTGGATCCAGCCAATGTAAGGCCAATTCAAGAAGGGGCTGTCAATGCATTGCTGGAAGCTGAAAGGGTTGCTGAGGCCACAAAACAAGCAATTAAAAGGAAGATTGCACAAGCTGCATCTATTGACTTCCAATCACGAAGCTTACCAGCAAAACTTCGCATAGAACCTGATGATCCTGAGGATGTGAAAGCTACCAAACGAAAAAAGATACATTCTTTTAAGTCGAAGATGAGGATGGAGCAACTAGAAGTTACGCAAAATAAACGTCAAAATGCTTGGCAACAGTTCCAAACAACCAAAGGCAAGACTAAGAAGATTGGTTTCTTTTCTGGACGCAAGCGAGAGAGCATCTTCAAGTCTCCTGACGATCCTTTTGGGAAGGTTGGGGTGACTGGGAGTGGGAAGGGCTTGACAGACTTTCAGAAGAGGGAAAAGCACTTGCATCTCAAAGGCGGAACAGCTGAGAATGATGATGAGGCTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

305

Amino Acids

33.91

Weight (kDa)

5.1

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	882
AclWI	GGATC	5 cut(s)	98, 428, 441, 596, 791
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	85, 447
AgsI	TTSAA	4 cut(s)	57, 326, 458, 784
AjnI	CCWGG	2 cut(s)	78, 310
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	378, 792
AlwI	GGATC	5 cut(s)	98, 428, 441, 596, 791
AoxI	GGCC	3 cut(s)	42, 449, 504
ApeKI	GCWGC	1 cut(s)	542
ArsI	GACNNNNNNTTYG	4 cut(s)	679, 711, 785, 817
AsuHPI	GGTGA	2 cut(s)	68, 829
AxyI	CCTNAGG	1 cut(s)	606
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	2 cut(s)	338, 658
BciT130I	CCWGG	2 cut(s)	80, 312
BcoDI	GTCTC	2 cut(s)	378, 792
BfaI	CTAG	2 cut(s)	240, 674
BisI	GCNGC	1 cut(s)	543
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	2 cut(s)	80, 312
BmiI	GGNNCC	2 cut(s)	435, 909
BmrFI	CCNGG	2 cut(s)	80, 312
BmrI	ACTGGG	1 cut(s)	831
BmsI	GCATC	5 cut(s)	242, 349, 554, 786, 880
BmuI	ACTGGG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 447
Bse1I	ACTGG	2 cut(s)	45, 826
Bse21I	CCTNAGG	1 cut(s)	606
Bse3DI	GCAATG	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	80, 312
BseGI	GGATG	2 cut(s)	616, 669
BseLI	CCNNNNNNNGG	2 cut(s)	85, 447
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	5 cut(s)	108, 269, 492, 597, 882
BseNI	ACTGG	2 cut(s)	45, 826
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	529
BseYI	CCCAGC	1 cut(s)	411
BshFI	GGCC	3 cut(s)	44, 451, 506
BsiHKAI	GWGCWC	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	85, 447
BsmAI	GTCTC	2 cut(s)	378, 792
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	3 cut(s)	44, 451, 506
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	5 cut(s)	67, 103, 433, 601, 796
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	882
BspANI	GGCC	3 cut(s)	44, 451, 506
BspCNI	CTCAG	5 cut(s)	109, 268, 493, 598, 883
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	435, 909
BspPI	GGATC	5 cut(s)	98, 428, 441, 596, 791
BspQI	GCTCTTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	45, 826
BssMI	GATC	5 cut(s)	67, 103, 433, 601, 796
Bst2UI	CCWGG	2 cut(s)	80, 312
Bst4CI	ACNGT	1 cut(s)	714
Bst6I	CTCTTC	3 cut(s)	15, 420, 848
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	767
BstDEI	CTNAG	8 cut(s)	26, 117, 255, 501, 606, 738, 891, 912
BstF5I	GGATG	2 cut(s)	616, 669
BstKTI	GATC	5 cut(s)	70, 106, 436, 604, 799
BstMAI	GTCTC	2 cut(s)	378, 792
BstMBI	GATC	5 cut(s)	67, 103, 433, 601, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 542
BstNI	CCWGG	2 cut(s)	80, 312
BstSCI	CCNGG	2 cut(s)	78, 310
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	606
BsuRI	GGCC	3 cut(s)	44, 451, 506
BtsCI	GGATG	2 cut(s)	616, 669
Cac8I	GCNNGC	1 cut(s)	767
CciI	TCATGA	1 cut(s)	295
CseI	GACGC	1 cut(s)	771
CsiI	ACCWGGT	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	2 cut(s)	130, 296
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	8 cut(s)	26, 117, 255, 501, 606, 738, 891, 912
DpnI	GATC	5 cut(s)	69, 105, 435, 603, 798
DpnII	GATC	5 cut(s)	67, 103, 433, 601, 796
Eam1104I	CTCTTC	3 cut(s)	15, 420, 848
EarI	CTCTTC	3 cut(s)	15, 420, 848
EciI	GGCGGA	1 cut(s)	897
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	78, 310
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	2 cut(s)	133, 299
FaiI	YATR	8 cut(s)	32, 61, 123, 131, 297, 357, 405, 590
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 159, 191
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	129, 295
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	2 cut(s)	623, 676
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	2 cut(s)	240, 674
GluI	GCNGC	1 cut(s)	543
GsaI	CCCAGC	1 cut(s)	415
HaeIII	GGCC	3 cut(s)	44, 451, 506
HgaI	GACGC	1 cut(s)	771
Hin1II	CATG	2 cut(s)	133, 299
HindIII	AAGCTT	1 cut(s)	568
HinfI	GANTC	3 cut(s)	253, 272, 371
HphI	GGTGA	2 cut(s)	68, 829
Hpy166II	GTNNAC	2 cut(s)	112, 245
Hpy188I	TCNGA	6 cut(s)	118, 162, 198, 258, 289, 852
Hpy188III	TCNNGA	7 cut(s)	204, 296, 458, 564, 605, 759, 791
Hpy8I	GTNNAC	2 cut(s)	112, 245
HpyAV	CCTTC	4 cut(s)	5, 455, 802, 826
HpyCH4III	ACNGT	1 cut(s)	714
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	7 cut(s)	179, 185, 233, 476, 536, 545, 871
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 542
HpyF3I	CTNAG	8 cut(s)	26, 117, 255, 501, 606, 738, 891, 912
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	2 cut(s)	133, 299
Kzo9I	GATC	5 cut(s)	67, 103, 433, 601, 796
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	4 cut(s)	88, 279, 667, 913
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	5 cut(s)	242, 349, 554, 786, 880
MabI	ACCWGGT	1 cut(s)	78
MaeI	CTAG	2 cut(s)	240, 674
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	3 cut(s)	397, 679, 817
MalI	GATC	5 cut(s)	69, 105, 435, 603, 798
MboI	GATC	5 cut(s)	67, 103, 433, 601, 796
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	3 cut(s)	153, 453, 519
MlyI	GAGTC	2 cut(s)	247, 380
MmeI	TCCRAC	1 cut(s)	312
Mph1103I	ATGCAT	1 cut(s)	478
MseI	TTAA	2 cut(s)	522, 648
MspA1I	CMGCKG	1 cut(s)	890
MspR9I	CCNGG	2 cut(s)	80, 312
MvaI	CCWGG	2 cut(s)	80, 312
MwoI	GCNNNNNNNGC	2 cut(s)	473, 542
NdeII	GATC	5 cut(s)	67, 103, 433, 601, 796
NlaIII	CATG	2 cut(s)	133, 299
NlaIV	GGNNCC	2 cut(s)	435, 909
NmuCI	GTSAC	1 cut(s)	817
NsiI	ATGCAT	1 cut(s)	478
PagI	TCATGA	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	2 cut(s)	247, 379
PpsI	GAGTC	2 cut(s)	247, 379
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	78, 310
PspFI	CCCAGC	1 cut(s)	411
PspGI	CCWGG	2 cut(s)	78, 310
PspN4I	GGNNCC	2 cut(s)	435, 909
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	522, 648
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	5 cut(s)	67, 103, 433, 601, 796
SchI	GAGTC	2 cut(s)	247, 380
ScrFI	CCNGG	2 cut(s)	80, 312
SduI	GDGCHC	1 cut(s)	144
SexAI	ACCWGGT	1 cut(s)	78
SfaNI	GCATC	5 cut(s)	242, 349, 554, 786, 880
Sse9I	AATT	3 cut(s)	153, 453, 519
SsiI	CCGC	1 cut(s)	882
SspMI	CTAG	2 cut(s)	240, 674
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	78, 310
TaaI	ACNGT	1 cut(s)	714
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	2 cut(s)	369, 653
TasI	AATT	3 cut(s)	153, 453, 519
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	522, 648
Tru9I	TTAA	2 cut(s)	522, 648
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	1 cut(s)	279
XspI	CTAG	2 cut(s)	240, 674
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.