Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Reverse (-)

20967741 .. 20970571

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21510.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAAAGAGAGCTCAATGAGGTAATTGCTCTGACAGAAGAACTACTTGCAACTGCAAAGCAAAATCAGAATTCCGGATTAGATTTTGGGACAAGTGATAGTACATCACCTAGTTTGCCCCAGACTCAGAGGAATGAAAATGATTCAGGGAATATTTCCGATTATCATGACAAGTTTTCTGTTGGCACAAAAGTTCAAGCTGTTTGGAGTGAAGATGGGGAGTGGTATGATGCCACAATCGAGTCTCTTACTCCAAATGGGTATTTCGTTACTTATGATAGCTGGGGGAATAAAGAAGAGGTGGATCCAGACAATGTAAGACCAATTCAAGAAGGGGCTGTCAATGCATTGCTGGAAGCTGAAAGGGTTGCTGAGGCCACAAAACAAGCACTCAAAAGGAAGATTGCACAAGCTGCTTCTGTTGATTTCCAATCACGAAGTTTACCACCAAAACTTCGTATAGAACCTGATCGATCCAGAGGATGTGAAAGTTACCAAACGCAAAAAGATACATGCTTTCAAGTCGAAGATGAGGATGGAACAACTGGAAGTTACACAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

188

Amino Acids

20.84

Weight (kDa)

4.39

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	74
AclWI	GGATC	3 cut(s)	299, 312, 468
AcsI	RAATTY	1 cut(s)	70
AfaI	GTAC	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	197, 329, 521
AluBI	AGCT	5 cut(s)	13, 200, 282, 359, 413
AluI	AGCT	5 cut(s)	13, 200, 282, 359, 413
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	3 cut(s)	299, 312, 468
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	2 cut(s)	209, 530
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	472
BsaWI	WCCGGW	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	550
Bse3DI	GCAATG	1 cut(s)	347
BseAI	TCCGGA	1 cut(s)	74
BseCI	ATCGAT	1 cut(s)	472
BseGI	GGATG	2 cut(s)	488, 541
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	2 cut(s)	140, 363
BseNI	ACTGG	1 cut(s)	550
BseXI	GCAGC	1 cut(s)	400
BseYI	CCCAGC	1 cut(s)	282
BshFI	GGCC	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	304, 469, 473
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	2 cut(s)	139, 364
BspDI	ATCGAT	1 cut(s)	472
BspEI	TCCGGA	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	299, 312, 468
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	550
BssMI	GATC	3 cut(s)	304, 469, 473
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	126, 372
BstF5I	GGATG	2 cut(s)	488, 541
BstKTI	GATC	3 cut(s)	307, 472, 476
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	304, 469, 473
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 413
BstNSI	RCATGY	1 cut(s)	516
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
Bsu15I	ATCGAT	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	488, 541
CciI	TCATGA	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	2 cut(s)	167, 513
CviJI	RGCY	7 cut(s)	13, 200, 282, 338, 359, 377, 413
CviKI_1	RGCY	7 cut(s)	13, 200, 282, 338, 359, 377, 413
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	2 cut(s)	126, 372
DpnI	GATC	3 cut(s)	306, 471, 475
DpnII	GATC	3 cut(s)	304, 469, 473
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoRI	GAATTC	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	2 cut(s)	170, 516
FaiI	YATR	5 cut(s)	168, 228, 276, 461, 514
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	166, 512
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	2 cut(s)	495, 548
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	414
GsaI	CCCAGC	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	2 cut(s)	170, 516
HinfI	GANTC	3 cut(s)	124, 143, 242
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	99
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	4 cut(s)	33, 69, 129, 160
Hpy188III	TCNNGA	6 cut(s)	75, 167, 308, 329, 435, 477
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	326
HpyCH4V	TGCA	4 cut(s)	50, 56, 347, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 413
HpyF3I	CTNAG	2 cut(s)	126, 372
Hsp92II	CATG	2 cut(s)	170, 516
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	3 cut(s)	304, 469, 473
LpnPI	CCDG	9 cut(s)	88, 132, 134, 268, 321, 338, 480, 490, 531
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	268, 491, 551
MalI	GATC	3 cut(s)	306, 471, 475
MboI	GATC	3 cut(s)	304, 469, 473
MboII	GAAGA	5 cut(s)	50, 224, 308, 412, 539
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	24, 70, 324
MlyI	GAGTC	2 cut(s)	118, 251
MnlI	CCTC	6 cut(s)	13, 123, 292, 367, 473, 526
Mph1103I	ATGCAT	1 cut(s)	349
MroI	TCCGGA	1 cut(s)	74
MspI	CCGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	344, 413
NdeII	GATC	3 cut(s)	304, 469, 473
NlaIII	CATG	2 cut(s)	170, 516
NlaIV	GGNNCC	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	516
PagI	TCATGA	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	2 cut(s)	118, 250
PpsI	GAGTC	2 cut(s)	118, 250
Psp124BI	GAGCTC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	15
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	3 cut(s)	304, 469, 473
SchI	GAGTC	2 cut(s)	118, 251
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	9 cut(s)	15, 24, 112, 202, 284, 303, 361, 415, 469
SfaNI	GCATC	1 cut(s)	220
Sse9I	AATT	3 cut(s)	24, 70, 324
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	15
TaqI	TCGA	3 cut(s)	240, 472, 525
TasI	AATT	3 cut(s)	24, 70, 324
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	150
XapI	RAATTY	1 cut(s)	70
XceI	RCATGY	1 cut(s)	516
XspI	CTAG	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.