RLG00000002279

Survival of motor neuron-related-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002626
Physical Location & Seq
Forward (+)
31297354 .. 31302796
5443 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002279

Sequence Viewer

Length: 915 bp
ATGCAAGGGGAAGGAGGAGAAGAGCTAACCATAGAGGAGCTCGCCTCCAATCTCTCCACATACAAAGAGCAGCTTCAACAGGTCAAGGAGGTTTTAGCCCATGACCCTGGAAACTCCGAGTATGCTGATGTGGAAAGAGAGCTCCATGAGGTAATAGCCATAACAGAAGAACTACTTGCAACTGCCAAGCAAAATCAGAATTTTGGATTAGAAATTGGAACAAGGGGTAGTGCGTCTCCTAGTTTTCCCCAATCTCAGAAGAATGAAAACGATGCAGGGAGTATTTCTGATTATCATGACAAATTTGCTCCTGGTACAAAAGTTCAAGCTGTTTGGAGTGAAGATGGGGAATGGTATGAAGCAACAATTGATTCTCTTACTCCAAATGGGTATTATGTTACATATGAGGGCTGGGGGAATAAAGAAGAGGTGGATCCAGCCAATGTAAGGCCAATTCAAGAAGGGGCTGTCAATGCATTGTTGGAAGCGGAAAAAGTTGCTGAAGCTACAAAACAAGCAATCAAAAGGAAAATTGCACAAGCTGCTTCTGTTGACTTCCAATCACGAAGCCTACCGGCAAAGCTTCGTATAGAACCGGATGATCCTGAGGATGTGAAAATTGCCAAACGCAAGAAGATACATGCTTTTAAGTCAAAAATGAGGATGGAGCAGTTGGAAGTCACTCAGAACAAGCGTCAAAATGCTTGGCAGCAGTTCCAAACTACCAAAGGCAAGACTAAAAAGAGTGGTTATTTATCTGGACGCAAGCGGGAGAGCATCTTCAAGTCTCCTGACGATCCTTTTGGAAAGGTTGGGGTGACTGGCAGTGGGAAGGGTTTGACAGACTTTCAAAAGAGAGAAAAGCATTTGCATCTCAAAGGGGGAGCAGCTGAGAATGATGATGAGGCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SMN

Protein Analysis

305

Amino Acids

33.78

Weight (kDa)

5.48

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMN_Tudor PF06003 104 - 150 2.6e-06 Survival motor neuron protein (SMN), Tudor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 488, 769
AclWI GGATC 4 cut(s) 428, 441, 596, 791
AcsI RAATTY 2 cut(s) 199, 302
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 5 cut(s) 77, 326, 458, 784, 851
AjnI CCWGG 2 cut(s) 106, 310
AluBI AGCT 9 cut(s) 25, 40, 73, 142, 329, 506, 542, 583, 890
AluI AGCT 9 cut(s) 25, 40, 73, 142, 329, 506, 542, 583, 890
Alw21I GWGCWC 2 cut(s) 42, 144
Alw26I GTCTC 2 cut(s) 240, 792
AlwI GGATC 4 cut(s) 428, 441, 596, 791
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 4 cut(s) 70, 542, 709, 887
ApoI RAATTY 2 cut(s) 199, 302
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
AsuHPI GGTGA 1 cut(s) 829
AxyI CCTNAGG 1 cut(s) 606
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BamHI GGATCC 1 cut(s) 433
BanII GRGCYC 2 cut(s) 42, 144
Bbv12I GWGCWC 2 cut(s) 42, 144
BbvI GCAGC 4 cut(s) 82, 529, 721, 899
BccI CCATC 2 cut(s) 338, 658
BciT130I CCWGG 2 cut(s) 108, 312
BcoDI GTCTC 2 cut(s) 240, 792
BfaI CTAG 1 cut(s) 240
BisI GCNGC 4 cut(s) 71, 543, 710, 888
BlsI GCNGC 4 cut(s) 72, 544, 711, 889
Bme1390I CCNGG 2 cut(s) 108, 312
BmiI GGNNCC 2 cut(s) 435, 909
BmrFI CCNGG 2 cut(s) 108, 312
BmsI GCATC 3 cut(s) 262, 786, 880
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BsaJI CCNNGG 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse118I RCCGGY 1 cut(s) 574
Bse1I ACTGG 1 cut(s) 826
Bse21I CCTNAGG 1 cut(s) 606
BseBI CCWGG 2 cut(s) 108, 312
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 3 cut(s) 604, 616, 669
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMII CTCAG 4 cut(s) 269, 597, 698, 882
BseNI ACTGG 1 cut(s) 826
BseRI GAGGAG 2 cut(s) 30, 50
BseXI GCAGC 4 cut(s) 82, 529, 721, 899
BseYI CCCAGC 1 cut(s) 411
BshFI GGCC 1 cut(s) 451
BsiHKAI GWGCWC 2 cut(s) 42, 144
BsiSI CCGG 2 cut(s) 575, 596
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 2 cut(s) 240, 792
BsmBI CGTCTC 1 cut(s) 240
BsnI GGCC 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 42, 144
Bsp143I GATC 3 cut(s) 433, 601, 796
BspACI CCGC 2 cut(s) 488, 769
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 4 cut(s) 268, 598, 697, 883
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 435, 909
BspPI GGATC 4 cut(s) 428, 441, 596, 791
BspQI GCTCTTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 574
BsrI ACTGG 1 cut(s) 826
BssAI RCCGGY 1 cut(s) 574
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 3 cut(s) 433, 601, 796
Bst2UI CCWGG 2 cut(s) 108, 312
Bst6I CTCTTC 2 cut(s) 15, 420
BstAPI GCANNNNNTGC 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 42, 767
BstDEI CTNAG 5 cut(s) 255, 606, 684, 891, 912
BstF5I GGATG 3 cut(s) 604, 616, 669
BstKTI GATC 3 cut(s) 436, 604, 799
BstMAI GTCTC 2 cut(s) 240, 792
BstMBI GATC 3 cut(s) 433, 601, 796
BstMWI GCNNNNNNNGC 2 cut(s) 473, 542
BstNI CCWGG 2 cut(s) 108, 312
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 2 cut(s) 106, 310
BstV1I GCAGC 4 cut(s) 82, 529, 721, 899
BstX2I RGATCY 1 cut(s) 433
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 1 cut(s) 433
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 3 cut(s) 604, 616, 669
BtsI GCAGTG 1 cut(s) 832
BtsIMutI CAGTG 1 cut(s) 832
Cac8I GCNNGC 2 cut(s) 42, 767
CciI TCATGA 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 574
CseI GACGC 3 cut(s) 222, 683, 771
Csp6I GTAC 1 cut(s) 315
CviAII CATG 4 cut(s) 101, 146, 296, 641
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 5 cut(s) 255, 606, 684, 891, 912
DpnI GATC 3 cut(s) 435, 603, 798
DpnII GATC 3 cut(s) 433, 601, 796
Eam1104I CTCTTC 2 cut(s) 15, 420
EarI CTCTTC 2 cut(s) 15, 420
Ecl136II GAGCTC 2 cut(s) 40, 142
Eco24I GRGCYC 2 cut(s) 42, 144
Eco53kI GAGCTC 2 cut(s) 40, 142
Eco57I CTGAAG 1 cut(s) 522
Eco81I CCTNAGG 1 cut(s) 606
EcoICRI GAGCTC 2 cut(s) 40, 142
EcoRII CCWGG 2 cut(s) 106, 310
EcoT22I ATGCAT 1 cut(s) 478
EcoT38I GRGCYC 2 cut(s) 42, 144
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 4 cut(s) 104, 149, 299, 644
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 159, 191
FatI CATG 4 cut(s) 100, 145, 295, 640
FauI CCCGC 1 cut(s) 762
FauNDI CATATG 1 cut(s) 403
Fnu4HI GCNGC 4 cut(s) 71, 543, 710, 888
FokI GGATG 3 cut(s) 611, 623, 676
FriOI GRGCYC 2 cut(s) 42, 144
Fsp4HI GCNGC 4 cut(s) 71, 543, 710, 888
FspBI CTAG 1 cut(s) 240
GluI GCNGC 4 cut(s) 71, 543, 710, 888
GsaI CCCAGC 1 cut(s) 415
HaeIII GGCC 1 cut(s) 451
HapII CCGG 2 cut(s) 575, 596
HgaI GACGC 3 cut(s) 222, 683, 771
Hin1II CATG 4 cut(s) 104, 149, 299, 644
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 1 cut(s) 371
HpaII CCGG 2 cut(s) 575, 596
HphI GGTGA 1 cut(s) 829
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 5 cut(s) 118, 198, 258, 289, 687
Hpy188III TCNNGA 6 cut(s) 296, 458, 564, 605, 759, 791
Hpy8I GTNNAC 1 cut(s) 553
HpyAV CCTTC 3 cut(s) 5, 455, 826
HpyCH4V TGCA 6 cut(s) 4, 179, 275, 476, 536, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 542
HpyF3I CTNAG 5 cut(s) 255, 606, 684, 891, 912
Hsp92II CATG 4 cut(s) 104, 149, 299, 644
Kzo9I GATC 3 cut(s) 433, 601, 796
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 6 cut(s) 37, 147, 313, 667, 884, 913
Lsp1109I GCAGC 4 cut(s) 82, 529, 721, 899
LweI GCATC 3 cut(s) 262, 786, 880
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 397, 679, 817
MalI GATC 3 cut(s) 435, 603, 798
MboI GATC 3 cut(s) 433, 601, 796
MboII GAAGA 7 cut(s) 32, 179, 271, 353, 437, 646, 772
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 2 cut(s) 42, 144
MluCI AATT 7 cut(s) 199, 213, 302, 366, 453, 531, 618
MmeI TCCRAC 2 cut(s) 462, 654
Mph1103I ATGCAT 1 cut(s) 478
MseI TTAA 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 890
MspI CCGG 2 cut(s) 575, 596
MspR9I CCNGG 2 cut(s) 108, 312
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 2 cut(s) 108, 312
MwoI GCNNNNNNNGC 2 cut(s) 473, 542
NdeI CATATG 1 cut(s) 403
NdeII GATC 3 cut(s) 433, 601, 796
NlaIII CATG 4 cut(s) 104, 149, 299, 644
NlaIV GGNNCC 2 cut(s) 435, 909
NmuCI GTSAC 2 cut(s) 679, 817
NsiI ATGCAT 1 cut(s) 478
NspI RCATGY 1 cut(s) 644
PagI TCATGA 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 4 cut(s) 72, 544, 711, 889
Psp124BI GAGCTC 2 cut(s) 42, 144
Psp6I CCWGG 2 cut(s) 106, 310
PspFI CCCAGC 1 cut(s) 411
PspGI CCWGG 2 cut(s) 106, 310
PspN4I GGNNCC 2 cut(s) 435, 909
PsuI RGATCY 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SacI GAGCTC 2 cut(s) 42, 144
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 4 cut(s) 71, 543, 710, 888
Sau3AI GATC 3 cut(s) 433, 601, 796
ScrFI CCNGG 2 cut(s) 108, 312
SduI GDGCHC 2 cut(s) 42, 144
SfaNI GCATC 3 cut(s) 262, 786, 880
Sse9I AATT 7 cut(s) 199, 213, 302, 366, 453, 531, 618
SsiI CCGC 2 cut(s) 488, 769
SspMI CTAG 1 cut(s) 240
SstI GAGCTC 2 cut(s) 42, 144
StyD4I CCNGG 2 cut(s) 106, 310
TasI AATT 7 cut(s) 199, 213, 302, 366, 453, 531, 618
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 1 cut(s) 832
TseFI GTSAC 2 cut(s) 679, 817
TseI GCWGC 4 cut(s) 70, 542, 709, 887
Tsp45I GTSAC 2 cut(s) 679, 817
TspDTI ATGAA 2 cut(s) 279, 372
TspRI CASTG 1 cut(s) 832
XapI RAATTY 2 cut(s) 199, 302
XceI RCATGY 1 cut(s) 644
XspI CTAG 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.