Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Reverse (-)

51550606 .. 51573670

Gene Structure 23065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG393700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATGTTTCTGAGCTGGAACAAATGCTTGCAGAACAAACAAAGATACTGTCAAGTCTTCAACAACAGGTTTGATGATTTGGCATCAGAGGTGGATCCAGCCAATGTAAGGCCAATTCAAGAAGGGGCTGTCAATGCACTGTTGGAAGCGGAAAAAGTTGCTGAAGCTACAAAACAAGCAATCAAAAGGAAAATTGCACAAGCTGCTTCTGTTGACTTCCAATCACGAAGCCTACCGGCAAAGCTTCGTATAGAACCGGATGATCCCGAGGATGTGAAAATTGCCAAACGCAAGAAGATACATGCTTTTAAGTCAAAAATGAGGATGGAGCAGTTGGAAGTCACTCAGAACAAGCGTCAAAATGCTTGGCAGCAGTTCCAAACTACCAAAGGCAAGACTAAGAAGGCACATGCCCTTGAATCTCGACCTCCGCGGCTACTGATCGACTACGATTTATATTTGAAGAAGAAAGGCAGGATTCACAGGTTGTCTTGGCCACATAACTTCCTGCCAGAGCACAATCTGAGACTCCCTCATATCAAGCCTCACAAGAAGCTGATGATTGTAGATACTGGTATTAAAGCTATACTCCCGGAAATGAAACTTCCATTGGTTGTCATGGCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

209

Amino Acids

24.26

Weight (kDa)

10.03

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	433
AciI	CCGC	3 cut(s)	149, 431, 433
AclWI	GGATC	3 cut(s)	89, 102, 257
AcoI	YGGCCR	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	61, 119, 419, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	6 cut(s)	15, 167, 203, 244, 556, 584
AluI	AGCT	6 cut(s)	15, 167, 203, 244, 556, 584
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	3 cut(s)	89, 102, 257
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	110, 494, 621
ApeKI	GCWGC	2 cut(s)	203, 370
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AsuC2I	CCSGG	1 cut(s)	593
AvaI	CYCGRG	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	496
BamHI	GGATCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	2 cut(s)	190, 382
BccI	CCATC	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	520
BisI	GCNGC	3 cut(s)	204, 371, 434
BlsI	GCNGC	3 cut(s)	205, 372, 435
Bme1390I	CCNGG	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	593
BmsI	GCATC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	267, 431
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	577
BseDI	CCNNGG	2 cut(s)	267, 431
BseGI	GGATG	3 cut(s)	265, 277, 330
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	359, 515
BseNI	ACTGG	1 cut(s)	577
BseXI	GCAGC	2 cut(s)	190, 382
Bsh1236I	CGCG	1 cut(s)	433
BshFI	GGCC	3 cut(s)	112, 496, 623
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	3 cut(s)	236, 257, 593
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	520
BsnI	GGCC	3 cut(s)	112, 496, 623
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	94, 262, 441
BspACI	CCGC	3 cut(s)	149, 431, 433
BspANI	GGCC	3 cut(s)	112, 496, 623
BspCNI	CTCAG	2 cut(s)	358, 516
BspFNI	CGCG	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	3 cut(s)	89, 102, 257
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	267, 431
BssMI	GATC	3 cut(s)	94, 262, 441
Bst4CI	ACNGT	2 cut(s)	50, 141
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	4 cut(s)	11, 345, 399, 524
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	265, 277, 330
BstFNI	CGCG	1 cut(s)	433
BstKTI	GATC	3 cut(s)	97, 265, 444
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	3 cut(s)	94, 262, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 203
BstNSI	RCATGY	2 cut(s)	305, 413
BstSCI	CCNGG	1 cut(s)	591
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	190, 382
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	112, 496, 623
BtgI	CCRYGG	1 cut(s)	431
BtsCI	GGATG	3 cut(s)	265, 277, 330
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	235
Cfr42I	CCGCGG	1 cut(s)	434
CseI	GACGC	1 cut(s)	344
CviAII	CATG	3 cut(s)	302, 410, 619
DdeI	CTNAG	4 cut(s)	11, 345, 399, 524
DpnI	GATC	3 cut(s)	96, 264, 443
DpnII	GATC	3 cut(s)	94, 262, 441
EaeI	YGGCCR	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	266
FaeI	CATG	3 cut(s)	305, 413, 622
FaiI	YATR	9 cut(s)	251, 303, 411, 457, 501, 537, 587, 620, 628
FatI	CATG	3 cut(s)	301, 409, 618
Fnu4HI	GCNGC	3 cut(s)	204, 371, 434
FokI	GGATG	3 cut(s)	272, 284, 337
Fsp4HI	GCNGC	3 cut(s)	204, 371, 434
GluI	GCNGC	3 cut(s)	204, 371, 434
HaeIII	GGCC	3 cut(s)	112, 496, 623
HapII	CCGG	3 cut(s)	236, 257, 593
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	305, 413, 622
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	3 cut(s)	419, 478, 528
HpaII	CCGG	3 cut(s)	236, 257, 593
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	4 cut(s)	12, 88, 348, 525
Hpy188III	TCNNGA	4 cut(s)	119, 225, 266, 423
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	116, 397
HpyCH4III	ACNGT	2 cut(s)	50, 141
HpyCH4V	TGCA	3 cut(s)	31, 137, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 203
HpyF3I	CTNAG	4 cut(s)	11, 345, 399, 524
Hsp92II	CATG	3 cut(s)	305, 413, 622
KspI	CCGCGG	1 cut(s)	434
Kzo9I	GATC	3 cut(s)	94, 262, 441
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	2 cut(s)	190, 382
LweI	GCATC	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	3 cut(s)	96, 264, 443
MboI	GATC	3 cut(s)	94, 262, 441
MboII	GAAGA	4 cut(s)	49, 307, 475, 478
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	519
MlsI	TGGCCA	1 cut(s)	496
MluCI	AATT	3 cut(s)	114, 192, 279
MluNI	TGGCCA	1 cut(s)	496
MlyI	GAGTC	1 cut(s)	522
MmeI	TCCRAC	2 cut(s)	123, 315
MnlI	CCTC	6 cut(s)	82, 262, 315, 438, 543, 555
Mox20I	TGGCCA	1 cut(s)	496
MscI	TGGCCA	1 cut(s)	496
MseI	TTAA	2 cut(s)	309, 579
Msp20I	TGGCCA	1 cut(s)	496
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	3 cut(s)	236, 257, 593
MspR9I	CCNGG	1 cut(s)	593
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	134, 203
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	3 cut(s)	94, 262, 441
NlaIII	CATG	3 cut(s)	305, 413, 622
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	2 cut(s)	305, 413
PfeI	GAWTC	2 cut(s)	419, 478
PfoI	TCCNGGA	1 cut(s)	591
PkrI	GCNGC	3 cut(s)	205, 372, 435
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	94
SacII	CCGCGG	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	309, 579
SatI	GCNGC	3 cut(s)	204, 371, 434
Sau3AI	GATC	3 cut(s)	94, 262, 441
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	1 cut(s)	92
Sfr303I	CCGCGG	1 cut(s)	434
SgrBI	CCGCGG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	114, 192, 279
SsiI	CCGC	3 cut(s)	149, 431, 433
StyD4I	CCNGG	1 cut(s)	591
TaaI	ACNGT	2 cut(s)	50, 141
TaqI	TCGA	2 cut(s)	424, 444
TasI	AATT	3 cut(s)	114, 192, 279
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	2 cut(s)	419, 478
Tru1I	TTAA	2 cut(s)	309, 579
Tru9I	TTAA	2 cut(s)	309, 579
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	203, 370
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	144
XceI	RCATGY	2 cut(s)	305, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.