Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Forward (+)

253001 .. 256210

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001136.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgtctcttcgatttatttctcacatgtttgatgatttggcatcagaggtggatccagccaatgtaaggccaattcaagaaggggctgtcaatgcattgttggaagcggaaaaagttgctgaagctacaaaacaagcaatcaaaaggaaaattgcacaagctgcttctgttgacttccaatcacgaagcctaccggcaaagcttcgtatagaaccggatgatcctgaggatgtgaaaattgccaaacgcaagaagatacatgcttttaagtcaaaaatgaggatggagcagttggaagtcactcagaacaagcgtcaaaatgcttggcagcagttccaaactaccaaaggcaagactaagaagctagctaagaatgctcttgtttggtgcattatcttgttacttgaatgtattgatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

140

Amino Acids

15.9

Weight (kDa)

9.55

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	3 cut(s)	47, 60, 215
AcuI	CTGAAG	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	77, 407
AluBI	AGCT	5 cut(s)	125, 161, 202, 364, 368
AluI	AGCT	5 cut(s)	125, 161, 202, 364, 368
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	47, 60, 215
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	161, 328
AsuNHI	GCTAGC	1 cut(s)	364
AxyI	CCTNAGG	1 cut(s)	225
BamHI	GGATCC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	148, 340
BccI	CCATC	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	365
BisI	GCNGC	2 cut(s)	162, 329
BlsI	GCNGC	2 cut(s)	163, 330
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	2 cut(s)	50, 406
BmtI	GCTAGC	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	225
BseGI	GGATG	3 cut(s)	223, 235, 288
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	216, 317
BseXI	GCAGC	2 cut(s)	148, 340
BshFI	GGCC	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	194, 215
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	52, 220
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	217, 316
BspLI	GGNNCC	1 cut(s)	54
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	3 cut(s)	47, 60, 215
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	2 cut(s)	52, 220
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	4 cut(s)	225, 303, 357, 369
BstF5I	GGATG	3 cut(s)	223, 235, 288
BstKTI	GATC	2 cut(s)	55, 223
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	52, 220
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 161, 374
BstNSI	RCATGY	2 cut(s)	28, 263
BstV1I	GCAGC	2 cut(s)	148, 340
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	223, 235, 288
Cac8I	GCNNGC	1 cut(s)	366
Cfr10I	RCCGGY	1 cut(s)	193
CseI	GACGC	1 cut(s)	302
CviAII	CATG	2 cut(s)	25, 260
CviJI	RGCY	9 cut(s)	59, 70, 86, 125, 161, 189, 202, 364, 368
CviKI_1	RGCY	9 cut(s)	59, 70, 86, 125, 161, 189, 202, 364, 368
DdeI	CTNAG	4 cut(s)	225, 303, 357, 369
DpnI	GATC	2 cut(s)	54, 222
DpnII	GATC	2 cut(s)	52, 220
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	141
Eco81I	CCTNAGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	97
FaeI	CATG	2 cut(s)	28, 263
FaiI	YATR	3 cut(s)	26, 209, 261
FatI	CATG	2 cut(s)	24, 259
Fnu4HI	GCNGC	2 cut(s)	162, 329
FokI	GGATG	3 cut(s)	230, 242, 295
Fsp4HI	GCNGC	2 cut(s)	162, 329
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	2 cut(s)	162, 329
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	2 cut(s)	194, 215
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	28, 263
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	200
HpaII	CCGG	2 cut(s)	194, 215
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	46, 306
Hpy188III	TCNNGA	3 cut(s)	77, 183, 224
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	95, 155, 390
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 161, 374
HpyF3I	CTNAG	4 cut(s)	225, 303, 357, 369
Hsp92II	CATG	2 cut(s)	28, 263
Kzo9I	GATC	2 cut(s)	52, 220
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	4 cut(s)	69, 207, 228, 237
Lsp1109I	GCAGC	2 cut(s)	148, 340
LweI	GCATC	2 cut(s)	50, 406
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	298, 399
MalI	GATC	2 cut(s)	54, 222
MboI	GATC	2 cut(s)	52, 220
MboII	GAAGA	1 cut(s)	265
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	3 cut(s)	72, 150, 237
MmeI	TCCRAC	2 cut(s)	81, 273
MnlI	CCTC	3 cut(s)	40, 220, 273
Mph1103I	ATGCAT	1 cut(s)	97
MseI	TTAA	1 cut(s)	267
MspI	CCGG	2 cut(s)	194, 215
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	3 cut(s)	92, 161, 374
NdeII	GATC	2 cut(s)	52, 220
NheI	GCTAGC	1 cut(s)	364
NlaIII	CATG	2 cut(s)	28, 263
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	2 cut(s)	28, 263
PciI	ACATGT	1 cut(s)	24
PctI	GAATGC	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	163, 330
PscI	ACATGT	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	2 cut(s)	162, 329
Sau3AI	GATC	2 cut(s)	52, 220
SetI	ASST	6 cut(s)	51, 127, 163, 204, 366, 370
SfaNI	GCATC	2 cut(s)	50, 406
Sse9I	AATT	3 cut(s)	72, 150, 237
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	365
TaqI	TCGA	1 cut(s)	10
TasI	AATT	3 cut(s)	72, 150, 237
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	161, 328
Tsp45I	GTSAC	1 cut(s)	298
XceI	RCATGY	2 cut(s)	28, 263
XspI	CTAG	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.