Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015584.1

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Reverse (-)

1849 .. 6841

Gene Structure 4993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015584.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgcaaggggaaggaggagaagaactaaccatagaggagctcgcctccaatctctccacatacaaagagcagcttcaacaggtcaaggaggttttagcccatgaccctggaaactccgagtatgctgatgtggaaagagagctccatgaggtaatagccatgacagaagaactacttgcaactgccaagcaaaatcagaattttggattagaaattggaacaaggggtagtgcgtctcctagttttccccagtctcagaagagtgaaaacgatgcagggagcatttctgattatcatgacaaatttgctcctggtacaaaagttcaagctgtttggagtgaagatggggagtggtatgaagcaacaattgattctcttactccaaatgggtattatgttacatatgatggctgggggaataaagaagaggtggatccagccaatgtaaggccaattcaagaaggggctgtcaatgcattgttggaagcggaaaaagttgctgaagctacaaaacaagcaatcaaaaggaaaattgcacaagctgcttctgttgacttccaatcacgaagcctaccggcaaagcttcgtatagaaccggatgatcctgaggatgtgaaaattgccaaacgcaagaagatacatgcttttaagtcaaaaatgaggatggagcagttggaagtcactcagaacaagcgtcaaaatgcttggcagcagttccaaactaccaaaggcaagactaagaagagtggttatttatctggacgcaagcgggagagcatcttcaagtctcccgacgatccttttggaaaggttggggtgactggcagtgggaagggtttgacagactttcaaaagagagaaaagcatttgcatctcaaagggggagcagctgagaatgatgatgaggctccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

304

Amino Acids

33.76

Weight (kDa)

5.47

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	488, 769
AclWI	GGATC	4 cut(s)	428, 441, 596, 791
AcsI	RAATTY	2 cut(s)	199, 302
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	447
AgsI	TTSAA	5 cut(s)	77, 326, 458, 784, 851
AjnI	CCWGG	2 cut(s)	106, 310
AluBI	AGCT	8 cut(s)	40, 73, 142, 329, 506, 542, 583, 890
AluI	AGCT	8 cut(s)	40, 73, 142, 329, 506, 542, 583, 890
Alw21I	GWGCWC	2 cut(s)	42, 144
Alw26I	GTCTC	3 cut(s)	240, 258, 792
AlwI	GGATC	4 cut(s)	428, 441, 596, 791
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	4 cut(s)	70, 542, 709, 887
ApoI	RAATTY	2 cut(s)	199, 302
ArsI	GACNNNNNNTTYG	2 cut(s)	785, 817
AsuHPI	GGTGA	1 cut(s)	829
AxyI	CCTNAGG	1 cut(s)	606
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BamHI	GGATCC	1 cut(s)	433
BanII	GRGCYC	2 cut(s)	42, 144
Bbv12I	GWGCWC	2 cut(s)	42, 144
BbvI	GCAGC	4 cut(s)	82, 529, 721, 899
BccI	CCATC	3 cut(s)	338, 401, 658
BciT130I	CCWGG	2 cut(s)	108, 312
BcoDI	GTCTC	3 cut(s)	240, 258, 792
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	4 cut(s)	71, 543, 710, 888
BlsI	GCNGC	4 cut(s)	72, 544, 711, 889
Bme1390I	CCNGG	2 cut(s)	108, 312
BmiI	GGNNCC	2 cut(s)	435, 909
BmrFI	CCNGG	2 cut(s)	108, 312
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	3 cut(s)	262, 786, 880
BmuI	ACTGGG	1 cut(s)	244
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	2 cut(s)	250, 826
Bse21I	CCTNAGG	1 cut(s)	606
BseBI	CCWGG	2 cut(s)	108, 312
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	3 cut(s)	604, 616, 669
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMII	CTCAG	4 cut(s)	269, 597, 698, 882
BseNI	ACTGG	2 cut(s)	250, 826
BseRI	GAGGAG	2 cut(s)	30, 50
BseXI	GCAGC	4 cut(s)	82, 529, 721, 899
BseYI	CCCAGC	1 cut(s)	411
BshFI	GGCC	1 cut(s)	451
BsiHKAI	GWGCWC	2 cut(s)	42, 144
BsiSI	CCGG	2 cut(s)	575, 596
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	3 cut(s)	240, 258, 792
BsmBI	CGTCTC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	451
Bsp1286I	GDGCHC	2 cut(s)	42, 144
Bsp143I	GATC	3 cut(s)	433, 601, 796
BspACI	CCGC	2 cut(s)	488, 769
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	4 cut(s)	268, 598, 697, 883
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	435, 909
BspPI	GGATC	4 cut(s)	428, 441, 596, 791
BsrFI	RCCGGY	1 cut(s)	574
BsrI	ACTGG	2 cut(s)	250, 826
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	3 cut(s)	433, 601, 796
Bst2UI	CCWGG	2 cut(s)	108, 312
Bst6I	CTCTTC	3 cut(s)	254, 420, 737
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	42, 767
BstDEI	CTNAG	6 cut(s)	255, 606, 684, 738, 891, 912
BstF5I	GGATG	3 cut(s)	604, 616, 669
BstKTI	GATC	3 cut(s)	436, 604, 799
BstMAI	GTCTC	3 cut(s)	240, 258, 792
BstMBI	GATC	3 cut(s)	433, 601, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 542
BstNI	CCWGG	2 cut(s)	108, 312
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	2 cut(s)	106, 310
BstV1I	GCAGC	4 cut(s)	82, 529, 721, 899
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	451
BtsCI	GGATG	3 cut(s)	604, 616, 669
BtsI	GCAGTG	1 cut(s)	832
BtsIMutI	CAGTG	1 cut(s)	832
Cac8I	GCNNGC	2 cut(s)	42, 767
CciI	TCATGA	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	574
CseI	GACGC	3 cut(s)	222, 683, 771
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	5 cut(s)	101, 146, 160, 296, 641
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	6 cut(s)	255, 606, 684, 738, 891, 912
DpnI	GATC	3 cut(s)	435, 603, 798
DpnII	GATC	3 cut(s)	433, 601, 796
Eam1104I	CTCTTC	3 cut(s)	254, 420, 737
EarI	CTCTTC	3 cut(s)	254, 420, 737
Ecl136II	GAGCTC	2 cut(s)	40, 142
Eco24I	GRGCYC	2 cut(s)	42, 144
Eco53kI	GAGCTC	2 cut(s)	40, 142
Eco57I	CTGAAG	1 cut(s)	522
Eco81I	CCTNAGG	1 cut(s)	606
EcoICRI	GAGCTC	2 cut(s)	40, 142
EcoRII	CCWGG	2 cut(s)	106, 310
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	2 cut(s)	42, 144
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	5 cut(s)	104, 149, 163, 299, 644
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 159, 191
FatI	CATG	5 cut(s)	100, 145, 159, 295, 640
FauI	CCCGC	1 cut(s)	762
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	71, 543, 710, 888
FokI	GGATG	3 cut(s)	611, 623, 676
FriOI	GRGCYC	2 cut(s)	42, 144
Fsp4HI	GCNGC	4 cut(s)	71, 543, 710, 888
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	4 cut(s)	71, 543, 710, 888
GsaI	CCCAGC	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	2 cut(s)	575, 596
HgaI	GACGC	3 cut(s)	222, 683, 771
Hin1II	CATG	5 cut(s)	104, 149, 163, 299, 644
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	2 cut(s)	575, 596
HphI	GGTGA	1 cut(s)	829
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	5 cut(s)	118, 198, 258, 289, 687
Hpy188III	TCNNGA	6 cut(s)	296, 458, 564, 605, 759, 791
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	1 cut(s)	797
HpyAV	CCTTC	3 cut(s)	5, 455, 826
HpyCH4V	TGCA	6 cut(s)	4, 179, 275, 476, 536, 871
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 542
HpyF3I	CTNAG	6 cut(s)	255, 606, 684, 738, 891, 912
Hsp92II	CATG	5 cut(s)	104, 149, 163, 299, 644
Kzo9I	GATC	3 cut(s)	433, 601, 796
LmnI	GCTCC	7 cut(s)	37, 147, 279, 313, 667, 884, 913
Lsp1109I	GCAGC	4 cut(s)	82, 529, 721, 899
LweI	GCATC	3 cut(s)	262, 786, 880
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	397, 679, 817
MalI	GATC	3 cut(s)	435, 603, 798
MboI	GATC	3 cut(s)	433, 601, 796
MboII	GAAGA	8 cut(s)	32, 179, 271, 353, 437, 646, 754, 772
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	42, 144
MluCI	AATT	7 cut(s)	199, 213, 302, 366, 453, 531, 618
MmeI	TCCRAC	2 cut(s)	462, 654
MnlI	CCTC	9 cut(s)	8, 28, 55, 82, 142, 421, 601, 654, 898
Mph1103I	ATGCAT	1 cut(s)	478
MseI	TTAA	1 cut(s)	648
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	2 cut(s)	575, 596
MspR9I	CCNGG	2 cut(s)	108, 312
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	2 cut(s)	108, 312
MwoI	GCNNNNNNNGC	2 cut(s)	473, 542
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	3 cut(s)	433, 601, 796
NlaIII	CATG	5 cut(s)	104, 149, 163, 299, 644
NlaIV	GGNNCC	2 cut(s)	435, 909
NmuCI	GTSAC	2 cut(s)	679, 817
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	644
PagI	TCATGA	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	4 cut(s)	72, 544, 711, 889
Psp124BI	GAGCTC	2 cut(s)	42, 144
Psp6I	CCWGG	2 cut(s)	106, 310
PspFI	CCCAGC	1 cut(s)	411
PspGI	CCWGG	2 cut(s)	106, 310
PspN4I	GGNNCC	2 cut(s)	435, 909
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SacI	GAGCTC	2 cut(s)	42, 144
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	4 cut(s)	71, 543, 710, 888
Sau3AI	GATC	3 cut(s)	433, 601, 796
ScrFI	CCNGG	2 cut(s)	108, 312
SduI	GDGCHC	2 cut(s)	42, 144
SfaNI	GCATC	3 cut(s)	262, 786, 880
Sse9I	AATT	7 cut(s)	199, 213, 302, 366, 453, 531, 618
SsiI	CCGC	2 cut(s)	488, 769
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	2 cut(s)	42, 144
StyD4I	CCNGG	2 cut(s)	106, 310
TasI	AATT	7 cut(s)	199, 213, 302, 366, 453, 531, 618
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	2 cut(s)	679, 817
TseI	GCWGC	4 cut(s)	70, 542, 709, 887
Tsp45I	GTSAC	2 cut(s)	679, 817
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	832
XapI	RAATTY	2 cut(s)	199, 302
XceI	RCATGY	1 cut(s)	644
XspI	CTAG	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.