MD15G1443200.v1.1

Survival of motor neuron-related-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002626
Physical Location & Seq
Reverse (-)
54328615 .. 54333596
4982 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1443200.v1.1.491

Sequence Viewer

Length: 939 bp
ATGGAAGGAGAAGGAGGAGAAGAGCTCAGCATACAGGAGCTGACCTCCAGTCTCTCGACGTACAAAGATCAGCTTCACCAGGTGAAGGAGCTTTTAGCTGATGATCCTGCAAACTCTGAGTATGCTGACATGGAAAGAGAGCTCAATGAGGTAATTGCTCTTACAGAAGAACTACTTGCAACTGCAAAGCAAAATCAGAATTCTGGATTAGGTTTCGGGACAAGTGATAGTGCATCACCTAGTTTGCCCCAGACTCAAAGGAATGAAAATGTTACTCCTATAATGTGTTCTGTGGATTCAGGGAATATTTCCGTTTATAATGACAAGTTTCCTGTTGGCACAAAAGTTCAAGCTGTTTGGAGTGAAGATGGGGAGTGGTATGATGCCACGATTGAGTCTCTTACTCCAAATGGGTACTTTGTTACTTATGAGAGCTGGGGGAATAAAGAAGAGGTAGATCCAGACAATGTCAGACCAATTCAAGAAGGGGCTGTCAATGCATTGCTGGAAGCTGAAAGGGTTGCTGAGGCCACAAAACAAGCGCTCAAAAGGAAGATTGCGCAAGCTGCTTCTGTTGATTTCCAATCACGAAGCTTACCAGCAAAACTTCGTATAGAACCTGATGATCCAGAGGATGTGAAAATCACCAAACGTAAAAAGATACATGCTTTTAAGTCAAAGATGAGGATGGAACAACTGGAAGTTACACAGAATAAACGTCAAAATGCTTGGCAACAGTTCCAAACAACCAAAGGCAAGACTAAGAAGATTGGTTTCTTTTCTGGACGCAAGCGTGAGAGCATCTTCAAGTCTCCTGAGGATCCTTTTGGGAAGGTTGGGGTGACTGGAAGTGGGAAGGGCTTGACAGAGTTTCAGAGGAGGGAAAAACACTTGCATCTCAAAGGGGGAACAGGTGAGAATGGTGAAGAGGCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SMN

Protein Analysis

313

Amino Acids

34.73

Weight (kDa)

5.25

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMN_Tudor PF06003 109 - 152 8.5e-06 Survival motor neuron protein (SMN), Tudor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
Acc16I TGCGCA 1 cut(s) 561
AclWI GGATC 5 cut(s) 98, 452, 620, 815, 828
AcsI RAATTY 1 cut(s) 199
AdeI CACNNNGTG 1 cut(s) 82
AfaI GTAC 2 cut(s) 62, 416
AfeI AGCGCT 1 cut(s) 543
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 3 cut(s) 350, 482, 808
AhdI GACNNNNNGTC 1 cut(s) 48
AjnI CCWGG 1 cut(s) 78
Alw21I GWGCWC 2 cut(s) 27, 144
Alw26I GTCTC 3 cut(s) 56, 402, 816
AlwI GGATC 5 cut(s) 98, 452, 620, 815, 828
AlwNI CAGNNNCTG 1 cut(s) 40
Aor51HI AGCGCT 1 cut(s) 543
AoxI GGCC 1 cut(s) 528
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 1 cut(s) 199
AspLEI GCGC 2 cut(s) 544, 562
AsuHPI GGTGA 7 cut(s) 68, 94, 228, 637, 853, 926, 935
AxyI CCTNAGG 1 cut(s) 816
BamHI GGATCC 1 cut(s) 820
BanII GRGCYC 2 cut(s) 27, 144
Bbv12I GWGCWC 2 cut(s) 27, 144
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 1 cut(s) 553
BccI CCATC 2 cut(s) 362, 682
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 3 cut(s) 56, 402, 816
BfaI CTAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 545
BisI GCNGC 1 cut(s) 567
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 1 cut(s) 80
BmeRI GACNNNNNGTC 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 822, 933
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 4 cut(s) 242, 373, 810, 904
BplI GAGNNNNNCTC 4 cut(s) 9, 41, 29, 61
BpmI CTGGAG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 3 cut(s) 48, 702, 850
Bse21I CCTNAGG 1 cut(s) 816
Bse3DI GCAATG 1 cut(s) 500
BseBI CCWGG 1 cut(s) 80
BseGI GGATG 2 cut(s) 640, 693
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 500
BseMII CTCAG 4 cut(s) 40, 108, 516, 807
BseNI ACTGG 3 cut(s) 48, 702, 850
BseRI GAGGAG 2 cut(s) 30, 892
BseXI GCAGC 1 cut(s) 553
BseYI CCCAGC 1 cut(s) 435
BshFI GGCC 1 cut(s) 530
BsiHKAI GWGCWC 2 cut(s) 27, 144
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 3 cut(s) 56, 402, 816
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 27, 144
Bsp143I GATC 5 cut(s) 67, 103, 457, 625, 820
Bsp1720I GCTNAGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 530
BspCNI CTCAG 4 cut(s) 39, 109, 517, 808
BspLI GGNNCC 2 cut(s) 822, 933
BspPI GGATC 5 cut(s) 98, 452, 620, 815, 828
BspQI GCTCTTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 500
BsrI ACTGG 3 cut(s) 48, 702, 850
BssMI GATC 5 cut(s) 67, 103, 457, 625, 820
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 738
Bst6I CTCTTC 3 cut(s) 15, 444, 921
BstC8I GCNNGC 2 cut(s) 564, 791
BstDEI CTNAG 6 cut(s) 26, 117, 525, 762, 816, 936
BstF5I GGATG 2 cut(s) 640, 693
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 2 cut(s) 544, 562
BstKTI GATC 5 cut(s) 70, 106, 460, 628, 823
BstMAI GTCTC 3 cut(s) 56, 402, 816
BstMBI GATC 5 cut(s) 67, 103, 457, 625, 820
BstMWI GCNNNNNNNGC 2 cut(s) 497, 566
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 553
BstX2I RGATCY 2 cut(s) 457, 820
BstYI RGATCY 2 cut(s) 457, 820
Bsu36I CCTNAGG 1 cut(s) 816
BsuRI GGCC 1 cut(s) 530
BtsCI GGATG 2 cut(s) 640, 693
Cac8I GCNNGC 2 cut(s) 564, 791
CaiI CAGNNNCTG 1 cut(s) 40
CfoI GCGC 2 cut(s) 544, 562
CseI GACGC 1 cut(s) 795
CsiI ACCWGGT 1 cut(s) 78
Csp6I GTAC 2 cut(s) 61, 415
CviAII CATG 2 cut(s) 130, 665
CviQI GTAC 2 cut(s) 61, 415
DdeI CTNAG 6 cut(s) 26, 117, 525, 762, 816, 936
DpnI GATC 5 cut(s) 69, 105, 459, 627, 822
DpnII GATC 5 cut(s) 67, 103, 457, 625, 820
DraIII CACNNNGTG 1 cut(s) 82
DriI GACNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 15, 444, 921
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 3 cut(s) 15, 444, 921
Ecl136II GAGCTC 2 cut(s) 25, 142
Eco24I GRGCYC 2 cut(s) 27, 144
Eco47III AGCGCT 1 cut(s) 543
Eco53kI GAGCTC 2 cut(s) 25, 142
Eco81I CCTNAGG 1 cut(s) 816
EcoICRI GAGCTC 2 cut(s) 25, 142
EcoRI GAATTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 78
EcoT22I ATGCAT 1 cut(s) 502
EcoT38I GRGCYC 2 cut(s) 27, 144
FaeI CATG 2 cut(s) 133, 668
FaiI YATR 9 cut(s) 32, 123, 131, 281, 318, 381, 429, 614, 666
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 159, 191
FaqI GGGAC 1 cut(s) 232
FatI CATG 2 cut(s) 129, 664
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 2 cut(s) 647, 700
FriOI GRGCYC 2 cut(s) 27, 144
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 1 cut(s) 240
FspI TGCGCA 1 cut(s) 561
GlaI GCGC 2 cut(s) 543, 561
GluI GCNGC 1 cut(s) 567
GsaI CCCAGC 1 cut(s) 439
GsuI CTGGAG 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 1 cut(s) 530
HgaI GACGC 1 cut(s) 795
HhaI GCGC 2 cut(s) 544, 562
Hin1II CATG 2 cut(s) 133, 668
Hin6I GCGC 2 cut(s) 542, 560
HinP1I GCGC 2 cut(s) 542, 560
HindIII AAGCTT 1 cut(s) 592
HinfI GANTC 3 cut(s) 253, 296, 395
HphI GGTGA 7 cut(s) 68, 94, 228, 637, 853, 926, 935
Hpy188I TCNGA 4 cut(s) 118, 198, 473, 876
Hpy188III TCNNGA 9 cut(s) 55, 204, 217, 461, 482, 588, 629, 783, 815
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 5 cut(s) 5, 79, 479, 826, 850
HpyCH4III ACNGT 1 cut(s) 738
HpyCH4IV ACGT 3 cut(s) 59, 652, 718
HpyCH4V TGCA 6 cut(s) 110, 179, 185, 233, 500, 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 497, 566
HpyF3I CTNAG 6 cut(s) 26, 117, 525, 762, 816, 936
HpySE526I ACGT 3 cut(s) 59, 652, 718
Hsp92II CATG 2 cut(s) 133, 668
HspAI GCGC 2 cut(s) 542, 560
Kzo9I GATC 5 cut(s) 67, 103, 457, 625, 820
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 3 cut(s) 37, 88, 937
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 4 cut(s) 242, 373, 810, 904
MabI ACCWGGT 1 cut(s) 78
MaeI CTAG 1 cut(s) 240
MaeII ACGT 3 cut(s) 59, 652, 718
MaeIII GTNAC 4 cut(s) 271, 421, 703, 841
MalI GATC 5 cut(s) 69, 105, 459, 627, 822
MboI GATC 5 cut(s) 67, 103, 457, 625, 820
MboII GAAGA 8 cut(s) 32, 179, 377, 461, 565, 778, 796, 938
MflI RGATCY 2 cut(s) 457, 820
MhlI GDGCHC 2 cut(s) 27, 144
MluCI AATT 3 cut(s) 153, 199, 477
MlyI GAGTC 2 cut(s) 247, 404
Mph1103I ATGCAT 1 cut(s) 502
MseI TTAA 1 cut(s) 672
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 497, 566
NdeII GATC 5 cut(s) 67, 103, 457, 625, 820
NlaIII CATG 2 cut(s) 133, 668
NlaIV GGNNCC 2 cut(s) 822, 933
NmuCI GTSAC 1 cut(s) 841
NsbI TGCGCA 1 cut(s) 561
NsiI ATGCAT 1 cut(s) 502
NspI RCATGY 1 cut(s) 668
PciSI GCTCTTC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 296
PflFI GACNNNGTC 1 cut(s) 467
PkrI GCNGC 1 cut(s) 568
PleI GAGTC 2 cut(s) 247, 403
PpsI GAGTC 2 cut(s) 247, 403
PsiI TTATAA 1 cut(s) 318
Psp124BI GAGCTC 2 cut(s) 27, 144
Psp6I CCWGG 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 435
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 822, 933
PstNI CAGNNNCTG 1 cut(s) 40
PsuI RGATCY 2 cut(s) 457, 820
PsyI GACNNNGTC 1 cut(s) 467
RsaI GTAC 2 cut(s) 62, 416
RsaNI GTAC 2 cut(s) 61, 415
SacI GAGCTC 2 cut(s) 27, 144
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 5 cut(s) 67, 103, 457, 625, 820
SchI GAGTC 2 cut(s) 247, 404
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 2 cut(s) 27, 144
SexAI ACCWGGT 1 cut(s) 78
SfaNI GCATC 4 cut(s) 242, 373, 810, 904
Sse9I AATT 3 cut(s) 153, 199, 477
SspI AATATT 1 cut(s) 307
SspMI CTAG 1 cut(s) 240
SstI GAGCTC 2 cut(s) 27, 144
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 738
TaiI ACGT 3 cut(s) 62, 655, 721
TaqI TCGA 1 cut(s) 56
TasI AATT 3 cut(s) 153, 199, 477
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 467
XapI RAATTY 1 cut(s) 199
XceI RCATGY 1 cut(s) 668
XspI CTAG 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.