Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Reverse (-)

7918140 .. 7933109

Gene Structure 14970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG038900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGTGCACTTTCCGCCGACTTTACAACCTCACGCCATTCCGAGAAGCTACGTCTGATATTCTCAATGACACTCAAGCGATTGCATGATGTTTCTGAGCTGGAACAAATGCTTGCAGAACAAACAAAGATACTGTCAAGTCTTCAACAACAGGTGGATCCAGCCAATGTAAGGCCAATTCAAGAAGGGGCTGTCAATGCATTGTTGGAAGCGGAAAAAGTTGCTGAAGCTACAAAACAAGCAATCAAAAGGAAAATTGCACAAGCTGCTTCTGTTGACTTCCAATCACGAAGCCTACCGGCAAAGCTTCGTATAGAACCGGATGATCCTGAGGATGTGAAAATTGCCAAACACAAGAAGATACATGCTTTTAAGTCAAAAATGAGGATGGAGCAGTTGGAAGTCACTCAGAACAAGCGTCAAAATGCTTGGCAGCAGTTCCAAACTACCAAAGGCAAGACTAAGAATAGTGGTTATTTATCTGGACGCAAGCGGGAGAGCATCTTCAAGTCTCCTGACGATCCTTTTGGAAAGGTTGGGGTGACTGGCAGTGGGAAGGGTTTGACAGACTTTCAAAAGAGAGAAAAGCATTTGCATCTCAAAGGGGAAGCAGCTGAGAATGATGATGAGGCTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

212

Amino Acids

23.79

Weight (kDa)

9.56

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	15, 212, 493
AclWI	GGATC	4 cut(s)	152, 165, 320, 515
AcuI	CTGAAG	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	146, 182, 508, 575
AluBI	AGCT	6 cut(s)	49, 100, 230, 266, 307, 614
AluI	AGCT	6 cut(s)	49, 100, 230, 266, 307, 614
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	516
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	4 cut(s)	152, 165, 320, 515
AoxI	GGCC	1 cut(s)	173
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	3 cut(s)	266, 433, 611
ArsI	GACNNNNNNTTYG	4 cut(s)	119, 151, 509, 541
AsuHPI	GGTGA	1 cut(s)	553
AxyI	CCTNAGG	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	253, 445, 623
BccI	CCATC	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	516
BisI	GCNGC	3 cut(s)	267, 434, 612
BlsI	GCNGC	3 cut(s)	268, 435, 613
BmiI	GGNNCC	2 cut(s)	159, 633
BmsI	GCATC	2 cut(s)	510, 604
BpiI	GAAGAC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	59
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	550
Bse21I	CCTNAGG	1 cut(s)	330
BseGI	GGATG	3 cut(s)	328, 340, 393
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMII	CTCAG	4 cut(s)	87, 321, 422, 606
BseNI	ACTGG	1 cut(s)	550
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	3 cut(s)	253, 445, 623
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	299, 320
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	516
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	157, 325, 520
BspACI	CCGC	3 cut(s)	15, 212, 493
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	4 cut(s)	88, 322, 421, 607
BspLI	GGNNCC	2 cut(s)	159, 633
BspPI	GGATC	4 cut(s)	152, 165, 320, 515
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	550
BssAI	RCCGGY	1 cut(s)	298
BssMI	GATC	3 cut(s)	157, 325, 520
Bst4CI	ACNGT	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	114, 491
BstDEI	CTNAG	6 cut(s)	96, 330, 408, 462, 615, 636
BstF5I	GGATG	3 cut(s)	328, 340, 393
BstKTI	GATC	3 cut(s)	160, 328, 523
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	3 cut(s)	157, 325, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 197, 266
BstNSI	RCATGY	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	253, 445, 623
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	3 cut(s)	328, 340, 393
BtsI	GCAGTG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	2 cut(s)	114, 491
Cfr10I	RCCGGY	1 cut(s)	298
CseI	GACGC	2 cut(s)	407, 495
CviAII	CATG	2 cut(s)	86, 365
DdeI	CTNAG	6 cut(s)	96, 330, 408, 462, 615, 636
DpnI	GATC	3 cut(s)	159, 327, 522
DpnII	GATC	3 cut(s)	157, 325, 520
EciI	GGCGGA	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	246
Eco81I	CCTNAGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	202
FaeI	CATG	2 cut(s)	89, 368
FaiI	YATR	3 cut(s)	87, 314, 366
FatI	CATG	2 cut(s)	85, 364
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	267, 434, 612
FokI	GGATG	3 cut(s)	335, 347, 400
Fsp4HI	GCNGC	3 cut(s)	267, 434, 612
GluI	GCNGC	3 cut(s)	267, 434, 612
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	2 cut(s)	299, 320
HgaI	GACGC	2 cut(s)	407, 495
Hin1II	CATG	2 cut(s)	89, 368
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	305
HpaII	CCGG	2 cut(s)	299, 320
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	2 cut(s)	8, 277
Hpy188I	TCNGA	4 cut(s)	43, 57, 97, 411
Hpy188III	TCNNGA	5 cut(s)	182, 288, 329, 483, 515
Hpy8I	GTNNAC	2 cut(s)	8, 277
HpyAV	CCTTC	2 cut(s)	179, 550
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	6 cut(s)	8, 85, 116, 200, 260, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 197, 266
HpyF3I	CTNAG	6 cut(s)	96, 330, 408, 462, 615, 636
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	89, 368
Kzo9I	GATC	3 cut(s)	157, 325, 520
LmnI	GCTCC	2 cut(s)	391, 637
LpnPI	CCDG	9 cut(s)	86, 137, 174, 312, 333, 342, 468, 528, 531
Lsp1109I	GCAGC	3 cut(s)	253, 445, 623
LweI	GCATC	2 cut(s)	510, 604
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	403, 541
MalI	GATC	3 cut(s)	159, 327, 522
MboI	GATC	3 cut(s)	157, 325, 520
MboII	GAAGA	3 cut(s)	134, 370, 496
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	3 cut(s)	177, 255, 342
MmeI	TCCRAC	2 cut(s)	186, 378
MnlI	CCTC	4 cut(s)	40, 325, 378, 622
Mph1103I	ATGCAT	1 cut(s)	202
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	2 cut(s)	299, 320
MwoI	GCNNNNNNNGC	3 cut(s)	14, 197, 266
NdeII	GATC	3 cut(s)	157, 325, 520
NlaIII	CATG	2 cut(s)	89, 368
NlaIV	GGNNCC	2 cut(s)	159, 633
NmuCI	GTSAC	2 cut(s)	403, 541
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	1 cut(s)	368
PkrI	GCNGC	3 cut(s)	268, 435, 613
PspN4I	GGNNCC	2 cut(s)	159, 633
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	614
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	267, 434, 612
Sau3AI	GATC	3 cut(s)	157, 325, 520
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	2 cut(s)	510, 604
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	177, 255, 342
SsiI	CCGC	3 cut(s)	15, 212, 493
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	55
TasI	AATT	3 cut(s)	177, 255, 342
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	2 cut(s)	403, 541
TseI	GCWGC	3 cut(s)	266, 433, 611
Tsp45I	GTSAC	2 cut(s)	403, 541
TspRI	CASTG	1 cut(s)	556
VneI	GTGCAC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.