Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Forward (+)

43712728 .. 43715350

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG249000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATGTTTCTGAGCTGGAACAAATGCTTGCAGAACAAACAAAGATACTGTCAAGTCTTCAACAACAGGTTTGATGATTTGGCATCAGAGGTGGATCCAGCCAATGTAAGGCCAATTCAAGAAGGGGCTGTCAATGCATTGTTGGAAGCGGAAAAAGTTGCTGAAGCTACAAAACAAGCAATCAAAAGGAAAATTGCACAAGCTGCTTCTGTTGACTTCCAATCACGAAGCCTACCGGCAAAGCTTCGTATAGAACCGGATGATCCTGAGGATGTGAAAATTGCCAAACGCAAGAAGATACATGCTTTTAAGTCAAAAATGAGGATGGAGCAGTTGGAAGTCACTCAGAACAAGCGTCAAAATGCTTGTCAGCAATTCCAAACTACCAAAGGCAAGACTAAGAAGAGTGGTTATTTATCTGGACGCAAGCGGGAGAGCATCTTCAAGTCTCCTGACGATCCTTTTGGAAAGGTTGGGGTGACTGGCAGTGGGAAGGGTTTGACAGACTTTCAAAAGAGAGAAGCATTTGCATCTCAAAGGGGGAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

183

Amino Acids

20.66

Weight (kDa)

9.91

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 430
AclWI	GGATC	4 cut(s)	89, 102, 257, 452
AcuI	CTGAAG	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	61, 119, 445, 512
AluBI	AGCT	5 cut(s)	15, 167, 203, 244, 549
AluI	AGCT	5 cut(s)	15, 167, 203, 244, 549
Alw26I	GTCTC	1 cut(s)	453
AlwI	GGATC	4 cut(s)	89, 102, 257, 452
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	203, 546
ArsI	GACNNNNNNTTYG	6 cut(s)	34, 66, 352, 384, 446, 478
AsuHPI	GGTGA	1 cut(s)	490
AxyI	CCTNAGG	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	453
BisI	GCNGC	2 cut(s)	204, 547
BlsI	GCNGC	2 cut(s)	205, 548
BmiI	GGNNCC	1 cut(s)	96
BmsI	GCATC	3 cut(s)	92, 447, 539
BpiI	GAAGAC	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	487
Bse21I	CCTNAGG	1 cut(s)	267
BseGI	GGATG	3 cut(s)	265, 277, 330
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	258, 359
BseNI	ACTGG	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	236, 257
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	453
BsnI	GGCC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	94, 262, 457
BspACI	CCGC	2 cut(s)	149, 430
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	259, 358
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	4 cut(s)	89, 102, 257, 452
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	235
BssMI	GATC	3 cut(s)	94, 262, 457
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	398
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	29, 428
BstDEI	CTNAG	4 cut(s)	11, 267, 345, 399
BstF5I	GGATG	3 cut(s)	265, 277, 330
BstKTI	GATC	3 cut(s)	97, 265, 460
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	3 cut(s)	94, 262, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 203
BstNSI	RCATGY	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	265, 277, 330
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	2 cut(s)	29, 428
Cfr10I	RCCGGY	1 cut(s)	235
CseI	GACGC	2 cut(s)	344, 432
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	9 cut(s)	15, 101, 112, 128, 167, 203, 231, 244, 549
CviKI_1	RGCY	9 cut(s)	15, 101, 112, 128, 167, 203, 231, 244, 549
DdeI	CTNAG	4 cut(s)	11, 267, 345, 399
DpnI	GATC	3 cut(s)	96, 264, 459
DpnII	GATC	3 cut(s)	94, 262, 457
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	183
Eco81I	CCTNAGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	139
FaeI	CATG	1 cut(s)	305
FaiI	YATR	2 cut(s)	251, 303
FatI	CATG	1 cut(s)	301
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	204, 547
FokI	GGATG	3 cut(s)	272, 284, 337
Fsp4HI	GCNGC	2 cut(s)	204, 547
GluI	GCNGC	2 cut(s)	204, 547
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	2 cut(s)	236, 257
HgaI	GACGC	2 cut(s)	344, 432
Hin1II	CATG	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	242
HpaII	CCGG	2 cut(s)	236, 257
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	12, 88, 348
Hpy188III	TCNNGA	5 cut(s)	119, 225, 266, 420, 452
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	116, 487
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	4 cut(s)	31, 137, 197, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 203
HpyF3I	CTNAG	4 cut(s)	11, 267, 345, 399
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	3 cut(s)	94, 262, 457
LmnI	GCTCC	2 cut(s)	328, 543
LpnPI	CCDG	8 cut(s)	52, 111, 249, 270, 279, 405, 465, 468
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	3 cut(s)	92, 447, 539
MaeIII	GTNAC	2 cut(s)	340, 478
MalI	GATC	3 cut(s)	96, 264, 459
MboI	GATC	3 cut(s)	94, 262, 457
MboII	GAAGA	4 cut(s)	49, 307, 415, 433
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	4 cut(s)	114, 192, 279, 374
MmeI	TCCRAC	2 cut(s)	123, 315
MnlI	CCTC	3 cut(s)	82, 262, 315
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	549
MspI	CCGG	2 cut(s)	236, 257
MwoI	GCNNNNNNNGC	2 cut(s)	134, 203
NdeII	GATC	3 cut(s)	94, 262, 457
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	340, 478
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	205, 548
PspN4I	GGNNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	204, 547
Sau3AI	GATC	3 cut(s)	94, 262, 457
SetI	ASST	8 cut(s)	17, 71, 93, 169, 205, 246, 474, 551
SfaNI	GCATC	3 cut(s)	92, 447, 539
Sse9I	AATT	4 cut(s)	114, 192, 279, 374
SsiI	CCGC	2 cut(s)	149, 430
TaaI	ACNGT	1 cut(s)	50
TasI	AATT	4 cut(s)	114, 192, 279, 374
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	340, 478
TseI	GCWGC	2 cut(s)	203, 546
Tsp45I	GTSAC	2 cut(s)	340, 478
TspRI	CASTG	1 cut(s)	493
XceI	RCATGY	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.