Rh1DG196100

Survival of motor neuron-related-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002626
Physical Location & Seq
Forward (+)
38727385 .. 38733363
5979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG196100.1

Sequence Viewer

Length: 648 bp
ATGCAGGTAATAGCCATGACAGAAGAACTACTTGCAACTGCCAAGCAAAATCAGAATTTTGGATTAGAAATTGGAACAAGGGGTAGTGCGTCTCCTAGTTTTCCCCAGTCTCAGAAGAGTGAAAACGATGCAGGGAGCATTTCTGATTATCATGACAAATTTGCTCCTGGTACAAAAGTTCAAGCTGTTTGGAGTGAAGATGGGGAGTGGTATGAAGCAACAATTGATTCTCTTACTCCAAATGGGTATTATGTTACATATGATGGCTGGGGGAATAAAGAAGAGGTGGATCCAGCCAATGTAAGGCCAATTCAAGAAGGGGCTGTCAATGCATTGTTGGAAGCGGAAAAAGTTGCTGAAGCTACAAAACAAGCAATCAAAAGGAAAATTGCACAAGCTGCTTCTGTTGACTTCCAATCACGAAGCCTACCGGCAAAGCTTCGTATAGAACCGGATGATCCTGAGGATGTGAAAATTGCCAAACGCAAGAAGATACATGCTTTTAAGTCGAAAATGAGGATGGAGCAGTTGGAAGTCACTCAGAACAAGCGTCAAAATGCTTGGCAGCAGTTCCAAACTACCAAAGGCAAGACTAAGAAGTGGTTATTTATCTGGACGCAAGCGGGAGAGCATCTTCAAGTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SMN

Protein Analysis

215

Amino Acids

24.19

Weight (kDa)

6.86

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMN_Tudor PF06003 56 - 102 1.4e-06 Survival motor neuron protein (SMN), Tudor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 344, 623
AclWI GGATC 3 cut(s) 284, 297, 452
AcsI RAATTY 2 cut(s) 55, 158
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 303
AgsI TTSAA 3 cut(s) 182, 314, 638
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 4 cut(s) 185, 362, 398, 439
AluI AGCT 4 cut(s) 185, 362, 398, 439
Alw26I GTCTC 2 cut(s) 96, 114
AlwI GGATC 3 cut(s) 284, 297, 452
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 398, 565
ApoI RAATTY 2 cut(s) 55, 158
AxyI CCTNAGG 1 cut(s) 462
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BamHI GGATCC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 385, 577
BccI CCATC 3 cut(s) 194, 257, 514
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 96, 114
BfaI CTAG 1 cut(s) 96
BisI GCNGC 2 cut(s) 399, 566
BlsI GCNGC 2 cut(s) 400, 567
Bme1390I CCNGG 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 2 cut(s) 118, 640
BmuI ACTGGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 3 cut(s) 460, 472, 525
BseLI CCNNNNNNNGG 1 cut(s) 303
BseMII CTCAG 3 cut(s) 125, 453, 554
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 385, 577
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 1 cut(s) 307
BsiSI CCGG 2 cut(s) 431, 452
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 96, 114
BsmBI CGTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 307
Bsp143I GATC 2 cut(s) 289, 457
BspACI CCGC 2 cut(s) 344, 623
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 3 cut(s) 124, 454, 553
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 3 cut(s) 284, 297, 452
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 430
BssMI GATC 2 cut(s) 289, 457
Bst2UI CCWGG 1 cut(s) 168
Bst6I CTCTTC 2 cut(s) 110, 276
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 4 cut(s) 111, 462, 540, 594
BstF5I GGATG 3 cut(s) 460, 472, 525
BstKTI GATC 2 cut(s) 292, 460
BstMAI GTCTC 2 cut(s) 96, 114
BstMBI GATC 2 cut(s) 289, 457
BstMWI GCNNNNNNNGC 2 cut(s) 329, 398
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 385, 577
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 3 cut(s) 460, 472, 525
Cac8I GCNNGC 1 cut(s) 621
CciI TCATGA 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 430
CseI GACGC 3 cut(s) 78, 539, 625
Csp6I GTAC 1 cut(s) 171
CviAII CATG 3 cut(s) 16, 152, 497
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 4 cut(s) 111, 462, 540, 594
DpnI GATC 2 cut(s) 291, 459
DpnII GATC 2 cut(s) 289, 457
Eam1104I CTCTTC 2 cut(s) 110, 276
EarI CTCTTC 2 cut(s) 110, 276
Eco57I CTGAAG 1 cut(s) 378
Eco81I CCTNAGG 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 3 cut(s) 19, 155, 500
FaiI YATR 8 cut(s) 17, 153, 213, 252, 259, 261, 446, 498
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 3 cut(s) 15, 151, 496
FauI CCCGC 1 cut(s) 616
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 399, 566
FokI GGATG 3 cut(s) 467, 479, 532
Fsp4HI GCNGC 2 cut(s) 399, 566
FspBI CTAG 1 cut(s) 96
GluI GCNGC 2 cut(s) 399, 566
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 307
HapII CCGG 2 cut(s) 431, 452
HgaI GACGC 3 cut(s) 78, 539, 625
Hin1II CATG 3 cut(s) 19, 155, 500
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 1 cut(s) 227
HpaII CCGG 2 cut(s) 431, 452
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 4 cut(s) 54, 114, 145, 543
Hpy188III TCNNGA 6 cut(s) 152, 314, 420, 461, 613, 645
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 1 cut(s) 311
HpyCH4V TGCA 5 cut(s) 4, 35, 131, 332, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 398
HpyF3I CTNAG 4 cut(s) 111, 462, 540, 594
Hsp92II CATG 3 cut(s) 19, 155, 500
Kzo9I GATC 2 cut(s) 289, 457
LmnI GCTCC 3 cut(s) 135, 169, 523
Lsp1109I GCAGC 2 cut(s) 385, 577
LweI GCATC 2 cut(s) 118, 640
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 253, 535
MalI GATC 2 cut(s) 291, 459
MboI GATC 2 cut(s) 289, 457
MboII GAAGA 6 cut(s) 35, 127, 209, 293, 502, 626
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 1 cut(s) 289
MluCI AATT 7 cut(s) 55, 69, 158, 222, 309, 387, 474
MmeI TCCRAC 2 cut(s) 318, 510
MnlI CCTC 3 cut(s) 277, 457, 510
Mph1103I ATGCAT 1 cut(s) 334
MseI TTAA 1 cut(s) 504
MspI CCGG 2 cut(s) 431, 452
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 329, 398
NdeI CATATG 1 cut(s) 259
NdeII GATC 2 cut(s) 289, 457
NlaIII CATG 3 cut(s) 19, 155, 500
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 535
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 500
PagI TCATGA 1 cut(s) 151
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 400, 567
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 291
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 2 cut(s) 399, 566
Sau3AI GATC 2 cut(s) 289, 457
ScrFI CCNGG 1 cut(s) 168
SetI ASST 6 cut(s) 9, 187, 288, 364, 400, 441
SfaNI GCATC 2 cut(s) 118, 640
Sse9I AATT 7 cut(s) 55, 69, 158, 222, 309, 387, 474
SsiI CCGC 2 cut(s) 344, 623
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 166
TaqI TCGA 1 cut(s) 509
TasI AATT 7 cut(s) 55, 69, 158, 222, 309, 387, 474
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 2 cut(s) 398, 565
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 1 cut(s) 228
XapI RAATTY 2 cut(s) 55, 158
XceI RCATGY 1 cut(s) 500
XspI CTAG 1 cut(s) 96
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.