Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Reverse (-)

28861940 .. 28866895

Gene Structure 4956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG266700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGGTGAAGCACGGGCTCCACCGAAACAGAGCCGCCAGATCTCATTCCCTACTGCGGTATTTATATTTGTCTTGTTGTTTGGTTGATTTTCTTCGTCGGCCATGGCCTCTACAGCTCCGTTCATTTGCAGGCATGATGTTTCTGAGCTGGAACAAATGCTTGCAGAACAAACAAAGATACTGTCAAGTCTTCAACAACAGGTTTGATGATTTGGCATCAGAGGTGGATCCAGCCAATGTAAGGCCAATTCAAGAAGGGGCTGTCAATGCACTGTTGGAAGCGGAAAAAGTTGCTGAAGCTACAAAACAAGCAATCAAAAGGAAAATTGCACAAGCTGCTTTTGTTGACTTCCAATCACGAAGCCTACCGGCAAAGCTTCGTATAGAACCGGATGATCCTGAGGATGTGAAAATTGCCAAACGCAAGAAGATACATGCTTTTAAGTCAAAAATGAGGATGGAGCAGTTGGAAGTCACTCAGAACAAGCGTCAAAATGCTTGGCAGCAGTTCCAAACTACCAAAGGCAAGACTAAGAAGGTAAGTTGGTATTTATGCGTTTCATTCTGCTTGCAAAATTGCTCTGATCTTTATCAAGTTACAGTAATCTACAGTTACCATTTTATTTATGCACGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

213

Amino Acids

24.97

Weight (kDa)

9.82

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 36, 58, 284
AclWI	GGATC	3 cut(s)	224, 237, 392
AcoI	YGGCCR	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	318
AfiI	CCNNNNNNNGG	2 cut(s)	57, 243
AgsI	TTSAA	2 cut(s)	196, 254
AluBI	AGCT	5 cut(s)	118, 150, 302, 338, 379
AluI	AGCT	5 cut(s)	118, 150, 302, 338, 379
AlwI	GGATC	3 cut(s)	224, 237, 392
AoxI	GGCC	3 cut(s)	101, 107, 245
ApeKI	GCWGC	2 cut(s)	338, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AsuHPI	GGTGA	1 cut(s)	19
AxyI	CCTNAGG	1 cut(s)	402
BamHI	GGATCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	325, 517
BccI	CCATC	1 cut(s)	454
BfmI	CTRYAG	2 cut(s)	113, 610
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	3 cut(s)	36, 339, 506
BlsI	GCNGC	3 cut(s)	37, 340, 507
BmiI	GGNNCC	2 cut(s)	20, 231
BmsI	GCATC	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	635
BsaBI	GATNNNNATC	1 cut(s)	591
BsaJI	CCNNGG	1 cut(s)	104
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 243
Bse118I	RCCGGY	1 cut(s)	370
Bse21I	CCTNAGG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	591
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	3 cut(s)	400, 412, 465
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	2 cut(s)	57, 243
BseMII	CTCAG	3 cut(s)	137, 393, 494
BseXI	GCAGC	2 cut(s)	325, 517
BshFI	GGCC	3 cut(s)	103, 109, 247
BsiSI	CCGG	2 cut(s)	371, 392
BslI	CCNNNNNNNGG	2 cut(s)	57, 243
BsnI	GGCC	3 cut(s)	103, 109, 247
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	41, 229, 397, 586
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	4 cut(s)	5, 36, 58, 284
BspANI	GGCC	3 cut(s)	103, 109, 247
BspCNI	CTCAG	3 cut(s)	138, 394, 493
BspLI	GGNNCC	2 cut(s)	20, 231
BspPI	GGATC	3 cut(s)	224, 237, 392
BsrFI	RCCGGY	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	4 cut(s)	41, 229, 397, 586
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	4 cut(s)	185, 276, 604, 614
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstBAI	YACGTR	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	133, 164, 572
BstDEI	CTNAG	4 cut(s)	146, 402, 480, 534
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	3 cut(s)	400, 412, 465
BstKTI	GATC	4 cut(s)	44, 232, 400, 589
BstMBI	GATC	4 cut(s)	41, 229, 397, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 269, 338
BstNSI	RCATGY	1 cut(s)	440
BstSFI	CTRYAG	2 cut(s)	113, 610
BstV1I	GCAGC	2 cut(s)	325, 517
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	2 cut(s)	41, 229
BstYI	RGATCY	2 cut(s)	41, 229
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	103, 109, 247
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	400, 412, 465
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	3 cut(s)	133, 164, 572
Cfr10I	RCCGGY	1 cut(s)	370
CseI	GACGC	1 cut(s)	479
CviAII	CATG	3 cut(s)	105, 136, 437
DdeI	CTNAG	4 cut(s)	146, 402, 480, 534
DpnI	GATC	4 cut(s)	43, 231, 399, 588
DpnII	GATC	4 cut(s)	41, 229, 397, 586
EaeI	YGGCCR	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	3 cut(s)	108, 139, 440
FaiI	YATR	7 cut(s)	67, 106, 137, 386, 438, 556, 630
FatI	CATG	3 cut(s)	104, 135, 436
Fnu4HI	GCNGC	3 cut(s)	36, 339, 506
FokI	GGATG	3 cut(s)	407, 419, 472
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	36, 339, 506
GluI	GCNGC	3 cut(s)	36, 339, 506
HaeIII	GGCC	3 cut(s)	103, 109, 247
HapII	CCGG	2 cut(s)	371, 392
HgaI	GACGC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	108, 139, 440
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	377
HpaII	CCGG	2 cut(s)	371, 392
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	4 cut(s)	147, 223, 483, 586
Hpy188III	TCNNGA	3 cut(s)	254, 360, 401
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	251, 532
HpyCH4III	ACNGT	4 cut(s)	185, 276, 604, 614
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	6 cut(s)	131, 166, 272, 332, 574, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 269, 338
HpyF3I	CTNAG	4 cut(s)	146, 402, 480, 534
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	3 cut(s)	108, 139, 440
Kzo9I	GATC	4 cut(s)	41, 229, 397, 586
LmnI	GCTCC	3 cut(s)	24, 123, 463
LpnPI	CCDG	8 cut(s)	52, 117, 136, 187, 246, 384, 405, 414
Lsp1109I	GCAGC	2 cut(s)	325, 517
LweI	GCATC	1 cut(s)	227
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	3 cut(s)	475, 598, 614
MalI	GATC	4 cut(s)	43, 231, 399, 588
MboI	GATC	4 cut(s)	41, 229, 397, 586
MboII	GAAGA	3 cut(s)	86, 184, 442
MflI	RGATCY	2 cut(s)	41, 229
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	4 cut(s)	249, 327, 414, 577
MmeI	TCCRAC	2 cut(s)	258, 450
MnlI	CCTC	4 cut(s)	120, 217, 397, 450
MseI	TTAA	1 cut(s)	444
MspI	CCGG	2 cut(s)	371, 392
MwoI	GCNNNNNNNGC	3 cut(s)	115, 269, 338
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	41, 229, 397, 586
NlaIII	CATG	3 cut(s)	108, 139, 440
NlaIV	GGNNCC	2 cut(s)	20, 231
NmuCI	GTSAC	1 cut(s)	475
NspI	RCATGY	1 cut(s)	440
PkrI	GCNGC	3 cut(s)	37, 340, 507
Ppu21I	YACGTR	1 cut(s)	635
PspN4I	GGNNCC	2 cut(s)	20, 231
PsuI	RGATCY	2 cut(s)	41, 229
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	3 cut(s)	36, 339, 506
Sau3AI	GATC	4 cut(s)	41, 229, 397, 586
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	9 cut(s)	120, 152, 206, 228, 304, 340, 381, 543, 637
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	2 cut(s)	113, 610
Sse9I	AATT	4 cut(s)	249, 327, 414, 577
SsiI	CCGC	4 cut(s)	5, 36, 58, 284
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	4 cut(s)	185, 276, 604, 614
TaiI	ACGT	1 cut(s)	637
TasI	AATT	4 cut(s)	249, 327, 414, 577
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	2 cut(s)	338, 505
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	2 cut(s)	114, 552
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	279
XceI	RCATGY	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.