Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Reverse (-)

52036832 .. 52044432

Gene Structure 7601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTTTGTATAATGGCTTCATACAAAATGCAACTCCTAGAACTAGATTTACCCAGCTCCCACCGGTCACTTTTACGTGCATACCTTTCCAGTTACCCGAGGAACAGAAGGTTCGCAACTCTCGGATTCTGTTGTCTGAGCATGGAAGCAAATTGCACAGCGCGGTTTTGCTTTGGCTTTGCAGTTGGGGGAAAAATTACCTTGCTTGCAATTGCTCTCTTCTTTGTTTCTTCCCAAAATGCTTTCTCTGTTTTCCTTGTGTACTATGCATGGCAAAATTCAGGAAGGATACTGCCAATTCAAGAAGGGGCTGTCAATGCATTGTTGGAAGCGGAAAAAGTTGCTGAAGCTACAAAACAAGCAATCAAAAGGAAAATTGCACAAGCTGCTTCTGTTGACTTCCAATCACGAAGCCTACCGGCAAAGCTTCGTATAGAACCGGATGATCCTGAGGATGTGAAAATTGCCAAACGCAAGAAGATACATGCTTTTAAGTCAAAAATGAGGATGGAGCAGTTGGAAGTCACTCAGAACAAGCGTCAAAATGCTTGGCAGCAGTTCCAAACTACCAAAGGCAAGACTAAGAAGAGTGGTTATTTATCTGGACACAAGCGGGAGAGCATCTTCAAGTCTCCTGACGATCCTTTTGGAAAGGTTGGGGTGACTGGCAGTGGGAAGGGTTTGACAGACTTTCAAAAGAGAGAAAAGCATTTGCATCTCAAAGGGGGAGCAGCTGAGAATGATGATGAGGCTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

252

Amino Acids

28.2

Weight (kDa)

9.72

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	163
AciI	CCGC	3 cut(s)	163, 332, 613
AclWI	GGATC	2 cut(s)	440, 635
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	263
AgeI	ACCGGT	1 cut(s)	63
AgsI	TTSAA	3 cut(s)	302, 628, 695
AluBI	AGCT	5 cut(s)	57, 350, 386, 427, 734
AluI	AGCT	5 cut(s)	57, 350, 386, 427, 734
Alw26I	GTCTC	1 cut(s)	636
AlwI	GGATC	2 cut(s)	440, 635
Ama87I	CYCGRG	1 cut(s)	97
ApeKI	GCWGC	3 cut(s)	386, 553, 731
ApoI	RAATTY	1 cut(s)	277
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AsiGI	ACCGGT	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	673
AvaI	CYCGRG	1 cut(s)	97
AxyI	CCTNAGG	1 cut(s)	450
BarI	GAAGNNNNNNTAC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	373, 565, 743
BccI	CCATC	1 cut(s)	502
BciVI	GTATCC	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	636
BfaI	CTAG	2 cut(s)	38, 44
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	3 cut(s)	387, 554, 732
BlsI	GCNGC	3 cut(s)	388, 555, 733
BmeT110I	CYCGRG	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	753
BmsI	GCATC	2 cut(s)	630, 724
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	98
BsaWI	WCCGGW	2 cut(s)	63, 439
Bse118I	RCCGGY	2 cut(s)	63, 418
Bse1I	ACTGG	2 cut(s)	90, 670
Bse21I	CCTNAGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	3 cut(s)	448, 460, 513
BseMII	CTCAG	4 cut(s)	128, 441, 542, 726
BseNI	ACTGG	2 cut(s)	90, 670
BseXI	GCAGC	3 cut(s)	373, 565, 743
BseYI	CCCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	163
BshTI	ACCGGT	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	64, 419, 440
BsmAI	GTCTC	1 cut(s)	636
BsoBI	CYCGRG	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	445, 640
BspACI	CCGC	3 cut(s)	163, 332, 613
BspCNI	CTCAG	4 cut(s)	129, 442, 541, 727
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	753
BspPI	GGATC	2 cut(s)	440, 635
BsrFI	RCCGGY	2 cut(s)	63, 418
BsrI	ACTGG	2 cut(s)	90, 670
BssAI	RCCGGY	2 cut(s)	63, 418
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	2 cut(s)	445, 640
Bst6I	CTCTTC	2 cut(s)	224, 581
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	6 cut(s)	137, 450, 528, 582, 735, 756
BstF5I	GGATG	3 cut(s)	448, 460, 513
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	448, 643
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	2 cut(s)	445, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 386
BstNSI	RCATGY	1 cut(s)	488
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	373, 565, 743
Bsu36I	CCTNAGG	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	448, 460, 513
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	2 cut(s)	63, 418
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	262
CspAI	ACCGGT	1 cut(s)	63
CviAII	CATG	3 cut(s)	142, 270, 485
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	6 cut(s)	137, 450, 528, 582, 735, 756
DpnI	GATC	2 cut(s)	447, 642
DpnII	GATC	2 cut(s)	445, 640
Eam1104I	CTCTTC	2 cut(s)	224, 581
EarI	CTCTTC	2 cut(s)	224, 581
Eco57I	CTGAAG	1 cut(s)	366
Eco81I	CCTNAGG	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	97
EcoT22I	ATGCAT	2 cut(s)	271, 322
FaeI	CATG	3 cut(s)	145, 273, 488
FaiI	YATR	8 cut(s)	11, 22, 82, 143, 267, 271, 434, 486
FatI	CATG	3 cut(s)	141, 269, 484
FauI	CCCGC	1 cut(s)	606
Fnu4HI	GCNGC	3 cut(s)	387, 554, 732
FokI	GGATG	3 cut(s)	455, 467, 520
Fsp4HI	GCNGC	3 cut(s)	387, 554, 732
FspBI	CTAG	2 cut(s)	38, 44
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	3 cut(s)	387, 554, 732
GsaI	CCCAGC	1 cut(s)	57
HapII	CCGG	3 cut(s)	64, 419, 440
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	145, 273, 488
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	3 cut(s)	64, 419, 440
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	2 cut(s)	262, 397
Hpy188I	TCNGA	3 cut(s)	125, 138, 531
Hpy188III	TCNNGA	6 cut(s)	282, 302, 408, 449, 603, 635
Hpy8I	GTNNAC	2 cut(s)	262, 397
HpyAV	CCTTC	4 cut(s)	102, 279, 299, 670
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	9 cut(s)	31, 80, 156, 182, 209, 269, 320, 380, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 386
HpyF3I	CTNAG	6 cut(s)	137, 450, 528, 582, 735, 756
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	3 cut(s)	145, 273, 488
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	445, 640
LmnI	GCTCC	4 cut(s)	62, 511, 728, 757
Lsp1109I	GCAGC	3 cut(s)	373, 565, 743
LweI	GCATC	2 cut(s)	630, 724
MaeI	CTAG	2 cut(s)	38, 44
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	4 cut(s)	66, 92, 523, 661
MalI	GATC	2 cut(s)	447, 642
MboI	GATC	2 cut(s)	445, 640
MboII	GAAGA	5 cut(s)	211, 222, 490, 598, 616
MfeI	CAATTG	1 cut(s)	210
MluCI	AATT	7 cut(s)	151, 195, 210, 277, 297, 375, 462
MmeI	TCCRAC	2 cut(s)	306, 498
MnlI	CCTC	4 cut(s)	93, 445, 498, 742
Mph1103I	ATGCAT	2 cut(s)	271, 322
MseI	TTAA	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	3 cut(s)	64, 419, 440
MunI	CAATTG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	317, 386
NdeII	GATC	2 cut(s)	445, 640
NlaIII	CATG	3 cut(s)	145, 273, 488
NlaIV	GGNNCC	1 cut(s)	753
NmuCI	GTSAC	3 cut(s)	66, 523, 661
NsiI	ATGCAT	2 cut(s)	271, 322
NspI	RCATGY	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	126
PinAI	ACCGGT	1 cut(s)	63
PkrI	GCNGC	3 cut(s)	388, 555, 733
Ppu21I	YACGTR	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	753
PsrI	GAACNNNNNNTAC	2 cut(s)	33, 65
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	3 cut(s)	387, 554, 732
Sau3AI	GATC	2 cut(s)	445, 640
SfaNI	GCATC	2 cut(s)	630, 724
Sse9I	AATT	7 cut(s)	151, 195, 210, 277, 297, 375, 462
SsiI	CCGC	3 cut(s)	163, 332, 613
SspMI	CTAG	2 cut(s)	38, 44
TaiI	ACGT	1 cut(s)	79
TasI	AATT	7 cut(s)	151, 195, 210, 277, 297, 375, 462
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	3 cut(s)	66, 523, 661
TseI	GCWGC	3 cut(s)	386, 553, 731
Tsp45I	GTSAC	3 cut(s)	66, 523, 661
TspDTI	ATGAA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	676
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	488
XspI	CTAG	2 cut(s)	38, 44
Zsp2I	ATGCAT	2 cut(s)	271, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.