Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002626

Physical Location & Seq

Genomic Coordinates Reverse (-)

19048892 .. 19054479

Gene Structure 5588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27830.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAAGGGGAAGGAGGAGACGAGCTTACCACCATACAAGAGCTCTCCTCCAATCTCTCCTTGTACAACGAACAGCTTCGCCAGATCAAGGATTTTTTAGCTCAAGACCCCGGAAACTCTGAGTATGCTGACCTGGAAAAAGAGTTACTTGAGGCCATAGCCATGACAGAAGATCTACTTGCAACTGCCAAACAAAATCAGAATTTAGGATTAGAAATTGGAACAAGCGGTAGCGCATCTCCTAGTTTTCCCCAGTCTCAGAAGAATGAGAATGATACAGGGAGTATTTCTGATTATCATGACAAATTTGCTCCTGGTACAAAAGTTCAGGCTGTTTATAGTGAAGATGGAGAGTGGTATGATGCAACAATCGATTCTCTTACACCAAATGGATACTATGTTACATATGATAGCTGGGGGAATAAAGAAGAGGTGGATCCAGCTAATGTCAGGCCAATTCAAGAAGGGGCTGTCAATGCATTGTTGGAAGCTGAAAAAGTTGCTGAAGCTACAAAACAAGCAATTAAAAGGAAAATTGCACAAGCTGCTTCTGTTGACTTCCAAGCACGAACCCTACCGCCGAAACTTCGTATAGAACCAGATGATCCTGAGGATGTGAAAATTGCCAAACGCAAGAAGATACATGCTTTTAAGTCGAAGATGAGGATGGAACAGCTGGAAGTATCTCAGAACAAGCGTCAAAATGCTTGGCAGCAGTTCCAAACTACCAAAGGCAAGACTAAGAAGAGTGGTTATTTATCTGGACGCAAGCGAGAGAGTATCTTCAAGTCTCCAGACGATCCTTTCGGAAAGGTTGGGGTGACCGGTAGTGGTAAAGGTTTGACAGACTTTCAAAAGAGGGAAAAGCATTTGCATCTTAAAGGGGGCACAGCTGAGAATGATGATGAGGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SMN

Protein Analysis

306

Amino Acids

33.82

Weight (kDa)

5.21

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02570 AT2G02570 AT2G02570 AT2G02570
fragaria_vesca	FvH4_5g27830 FvH4_5g27830 FvH4_5g27830
malus_domestica	MD08G1248300.v1.1 MD15G1443200.v1.1
prunus_persica	Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1 Prupe.1G585700_v2.0.a1
pyrus_communis	pycom08g21510 pycom15g39090
rosa_chinensis	RchiOBHm_Chr5g0068831 RchiOBHm_Chr7g0219661
rosa_laevigata	RLG00000002279
rosa_multiflora	Rmu_sc0001136.1_g000049 Rmu_sc0015584.1_g000002 Rmu_sc0023113.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239950
rosa_rugosa	Rorug07G0186700 Rorug07G0186700
rosa_samantha	Rh1BG165500 Rh1DG196100 Rh2AG258300 Rh2BG395200 Rh2DG266700 Rh4CG038900 Rh6DG249000 Rh7AG330600 Rh7AG393700 Rh7BG320400 Rh7CG347900 Rh7CG412800 Rh7CG436600 Rh7DG325900
rosa_wichuraiana	Rw2G031770 Rw7G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	228, 578
AclWI	GGATC	4 cut(s)	431, 444, 599, 794
AcsI	RAATTY	2 cut(s)	202, 305
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	2 cut(s)	65, 319
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgeI	ACCGGT	1 cut(s)	824
AgsI	TTSAA	3 cut(s)	461, 787, 854
AjnI	CCWGG	2 cut(s)	132, 313
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	3 cut(s)	12, 261, 795
AlwI	GGATC	4 cut(s)	431, 444, 599, 794
AoxI	GGCC	2 cut(s)	153, 452
ApeKI	GCWGC	2 cut(s)	545, 712
ApoI	RAATTY	2 cut(s)	202, 305
ArsI	GACNNNNNNTTYG	2 cut(s)	788, 820
AsiGI	ACCGGT	1 cut(s)	824
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	832
AxyI	CCTNAGG	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	890
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
BamHI	GGATCC	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	532, 724
BccI	CCATC	2 cut(s)	341, 661
BciT130I	CCWGG	2 cut(s)	134, 315
BciVI	GTATCC	1 cut(s)	386
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	3 cut(s)	12, 261, 795
BfaI	CTAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	386
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	2 cut(s)	546, 713
BlsI	GCNGC	2 cut(s)	547, 714
Bme1390I	CCNGG	3 cut(s)	111, 134, 315
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	3 cut(s)	111, 134, 315
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	3 cut(s)	245, 352, 883
BmuI	ACTGGG	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpmI	CTGGAG	1 cut(s)	777
BpuEI	CTTGAG	2 cut(s)	87, 170
BpuMI	CCSGG	1 cut(s)	111
Bsa29I	ATCGAT	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	824
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	1 cut(s)	253
Bse21I	CCTNAGG	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	134, 315
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	619, 672
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	5 cut(s)	111, 272, 600, 701, 885
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	2 cut(s)	30, 37
BseSI	GKGCMC	1 cut(s)	890
BseXI	GCAGC	2 cut(s)	532, 724
BseYI	CCCAGC	1 cut(s)	414
BshFI	GGCC	2 cut(s)	155, 454
BshTI	ACCGGT	1 cut(s)	824
BshVI	ATCGAT	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	111, 825
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	3 cut(s)	12, 261, 795
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	155, 454
Bsp1286I	GDGCHC	2 cut(s)	45, 890
Bsp1407I	TGTACA	1 cut(s)	63
Bsp143I	GATC	5 cut(s)	84, 172, 436, 604, 799
BspACI	CCGC	2 cut(s)	228, 578
BspANI	GGCC	2 cut(s)	155, 454
BspCNI	CTCAG	5 cut(s)	112, 271, 601, 700, 886
BspDI	ATCGAT	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	438
BspPI	GGATC	4 cut(s)	431, 444, 599, 794
BsrFI	RCCGGY	1 cut(s)	824
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	5 cut(s)	84, 172, 436, 604, 799
Bst2UI	CCWGG	2 cut(s)	134, 315
Bst6I	CTCTTC	2 cut(s)	423, 740
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	770
BstDEI	CTNAG	7 cut(s)	120, 258, 609, 687, 741, 894, 915
BstEII	GGTNACC	1 cut(s)	820
BstF5I	GGATG	2 cut(s)	619, 672
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	5 cut(s)	87, 175, 439, 607, 802
BstMAI	GTCTC	3 cut(s)	12, 261, 795
BstMBI	GATC	5 cut(s)	84, 172, 436, 604, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 545
BstNI	CCWGG	2 cut(s)	134, 315
BstNSI	RCATGY	1 cut(s)	647
BstPI	GGTNACC	1 cut(s)	820
BstSCI	CCNGG	3 cut(s)	109, 132, 313
BstSLI	GKGCMC	1 cut(s)	890
BstV1I	GCAGC	2 cut(s)	532, 724
BstX2I	RGATCY	2 cut(s)	172, 436
BstYI	RGATCY	2 cut(s)	172, 436
Bsu15I	ATCGAT	1 cut(s)	372
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	155, 454
BsuTUI	ATCGAT	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	619, 672
Cac8I	GCNNGC	1 cut(s)	770
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	236
Cfr10I	RCCGGY	1 cut(s)	824
ClaI	ATCGAT	1 cut(s)	372
CseI	GACGC	2 cut(s)	686, 774
Csp6I	GTAC	2 cut(s)	64, 318
CspAI	ACCGGT	1 cut(s)	824
CviAII	CATG	3 cut(s)	163, 299, 644
CviQI	GTAC	2 cut(s)	64, 318
DdeI	CTNAG	7 cut(s)	120, 258, 609, 687, 741, 894, 915
DpnI	GATC	5 cut(s)	86, 174, 438, 606, 801
DpnII	GATC	5 cut(s)	84, 172, 436, 604, 799
Eam1104I	CTCTTC	2 cut(s)	423, 740
EarI	CTCTTC	2 cut(s)	423, 740
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	525
Eco81I	CCTNAGG	1 cut(s)	609
Eco91I	GGTNACC	1 cut(s)	820
EcoICRI	GAGCTC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	820
EcoRII	CCWGG	2 cut(s)	132, 313
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	166, 302, 647
FalI	AAGNNNNNCTT	4 cut(s)	132, 164, 162, 194
FatI	CATG	3 cut(s)	162, 298, 643
FauNDI	CATATG	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	546, 713
FokI	GGATG	2 cut(s)	626, 679
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	546, 713
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	546, 713
GsaI	CCCAGC	1 cut(s)	418
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	2 cut(s)	155, 454
HapII	CCGG	2 cut(s)	111, 825
HgaI	GACGC	2 cut(s)	686, 774
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	166, 302, 647
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	2 cut(s)	111, 825
HphI	GGTGA	1 cut(s)	832
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	6 cut(s)	121, 201, 261, 292, 690, 809
Hpy188III	TCNNGA	6 cut(s)	104, 299, 461, 608, 762, 794
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	5, 458
HpyCH4V	TGCA	5 cut(s)	182, 365, 479, 539, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 545
HpyF3I	CTNAG	7 cut(s)	120, 258, 609, 687, 741, 894, 915
Hsp92II	CATG	3 cut(s)	166, 302, 647
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	5 cut(s)	84, 172, 436, 604, 799
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	2 cut(s)	532, 724
LweI	GCATC	3 cut(s)	245, 352, 883
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	3 cut(s)	144, 400, 820
MalI	GATC	5 cut(s)	86, 174, 438, 606, 801
MboI	GATC	5 cut(s)	84, 172, 436, 604, 799
MboII	GAAGA	8 cut(s)	182, 274, 356, 440, 649, 670, 757, 775
MflI	RGATCY	2 cut(s)	172, 436
MhlI	GDGCHC	2 cut(s)	45, 890
MluCI	AATT	7 cut(s)	202, 216, 305, 456, 522, 534, 621
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	8 cut(s)	8, 58, 145, 424, 604, 657, 852, 901
Mph1103I	ATGCAT	1 cut(s)	481
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	3 cut(s)	525, 651, 879
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	676, 893
MspI	CCGG	2 cut(s)	111, 825
MspR9I	CCNGG	3 cut(s)	111, 134, 315
MvaI	CCWGG	2 cut(s)	134, 315
MwoI	GCNNNNNNNGC	2 cut(s)	476, 545
NciI	CCSGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	5 cut(s)	84, 172, 436, 604, 799
NlaIII	CATG	3 cut(s)	166, 302, 647
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	820
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	1 cut(s)	647
PagI	TCATGA	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	374
PinAI	ACCGGT	1 cut(s)	824
PkrI	GCNGC	2 cut(s)	547, 714
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	132, 313
PspEI	GGTNACC	1 cut(s)	820
PspFI	CCCAGC	1 cut(s)	414
PspGI	CCWGG	2 cut(s)	132, 313
PspN4I	GGNNCC	1 cut(s)	438
PsuI	RGATCY	2 cut(s)	172, 436
PvuII	CAGCTG	2 cut(s)	676, 893
RsaI	GTAC	2 cut(s)	65, 319
RsaNI	GTAC	2 cut(s)	64, 318
RseI	CAYNNNNRTG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	525, 651, 879
SatI	GCNGC	2 cut(s)	546, 713
Sau3AI	GATC	5 cut(s)	84, 172, 436, 604, 799
ScrFI	CCNGG	3 cut(s)	111, 134, 315
SduI	GDGCHC	2 cut(s)	45, 890
SfaNI	GCATC	3 cut(s)	245, 352, 883
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	102, 149
SmoI	CTYRAG	2 cut(s)	102, 149
Sse9I	AATT	7 cut(s)	202, 216, 305, 456, 522, 534, 621
SsiI	CCGC	2 cut(s)	228, 578
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	3 cut(s)	109, 132, 313
TaqI	TCGA	2 cut(s)	372, 656
TasI	AATT	7 cut(s)	202, 216, 305, 456, 522, 534, 621
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	3 cut(s)	525, 651, 879
Tru9I	TTAA	3 cut(s)	525, 651, 879
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	2 cut(s)	545, 712
Tsp45I	GTSAC	1 cut(s)	820
XapI	RAATTY	2 cut(s)	202, 305
XceI	RCATGY	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.