Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001646

Physical Location & Seq

Genomic Coordinates Forward (+)

2322215 .. 2325197

Gene Structure 2983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCGGCTACAGCAGCTTCAAGCTTACAAATTGCTACACGAAGGCCGAGCATGTCTTCGCCTAGCAAAATTCTTAAAGCAGGAACCTACATTGTTGGTGCCAATCCTGGAAACGCTTCATGGGATAAACTTTCATGCACTCGCCAATTATCAAACCTTGGATGTTTGAGAAACCACAGTGCTGTTCCAACTTGTAAGAGACCCTTTTCTTTTTCCACAAGGGCAATGTCTGAATCCAGTGAAAACAAGGCTCCTTCAGGGCTTCCAATTGATTTGAGAGGGAAAAGAGCTTTCATTGCTGGTATAGCTGATGATAATGGCTATGGTTGGGCCATAGCAAAATCTCTTGCTGCTGCTGGAGCTGAAATATTGGTTGGGACTTGGGTTCCTGCACTTAATATATTTGAGACAAGCTTGAGACGTGGAAAATTCGACCAGTCACGAGTGTTGCCTGACGGGTCATTGATGGAGATTAAGAAGGTTTATGCTTTGGATGCTGTGTTTGACAATCCTGAAGATGTGCCTGAAGATGTGAAAACGAATAAGCGATATGCAGGATCGTCAAACTGGACCGTACAGGAAGCTGCTGAATGTGTGAAAAAAGATTTTGGAAGCATTGACATTCTTGTCCATTCCCTTGCAAATGGCCCAGAGGTTAGCAAACCTCTTCTGGAGACATCAAGGAAAGGCTATCTCGCTGCTATCTCTGCTTCGAGTTACTCCTTTGTTTCCTTGCTGAGGCATTTTCTGCCAATTATGAACCCAGGAGGTGCTTCAATATCTCTTACTTACATTGCCTCTGAAAGAATCATTCCTGGGTATGGTGGAGGTATGAGTTCTGCCAAAGCTGCACTAGAGAGTGACACACGGGTGCTTGCATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGGGTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGATTGAGTATTCCTACAATAATGGGCCTATTCAGAAAACACTGACCGCAGATGAAGTTGGGAATGCAGCAGCCTTCTTGGCATCTCCATTGGCCTCTGCCATAACCGGTGCAACCATATATGTGGACAATGGTTTGAATGCAATGGGCGTTGCACTGGACAGCCCGGTGTTCAAAGACCTTAACAGCAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005835 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016631 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

390

Amino Acids

41.21

Weight (kDa)

9.1

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	191 - 372	1e-50	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	191 - 318	6e-08	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05990 AT2G05990
fragaria_vesca	FvH4_3g44170 FvH4_3g44170 FvH4_6g22440 FvH4_6g22440 FvH4_6g22440 FvH4_6g22440
malus_domestica	MD03G1016800.v1.1 MD11G1017400.v1.1 MD12G1059500.v1.1 MD14G1058600.v1.1
prunus_persica	Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.7G076200_v2.0.a1 Prupe.7G076200_v2.0.a1
pyrus_communis	pycom03g01440 pycom11g01230 pycom12g05150 pycom14g04740
rosa_chinensis	RchiOBHm_Chr3g0479801 RchiOBHm_Chr5g0080511
rosa_laevigata	RLG00000023535 RLG00000036862
rosa_multiflora	Rmu_sc0004329.1_g000006 Rmu_sc0007249.1_g000002 Rmu_sc0037164.1_g000001 Rmu_sc0043089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002900 Rroxscaffold_6G00401960
rosa_rugosa	Rorug03G0179000 Rorug03G0179000 Rorug05G0469300
rosa_samantha	Rh3AG229300 Rh3BG262500 Rh3CG259400 Rh3DG255600 Rh5AG523100 Rh5BG544800 Rh5CG568200 Rh5DG555100
rosa_wichuraiana	Rw0G002250 Rw0G015280 Rw0G019220 Rw0G023190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	98
AciI	CCGC	3 cut(s)	5, 926, 1023
AclWI	GGATC	1 cut(s)	565
AcsI	RAATTY	2 cut(s)	69, 428
AcuI	CTGAAG	3 cut(s)	240, 534, 546
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	2 cut(s)	738, 821
AgeI	ACCGGT	1 cut(s)	1082
AgsI	TTSAA	4 cut(s)	21, 777, 1114, 1150
AjiI	CACGTC	1 cut(s)	422
AjnI	CCWGG	3 cut(s)	106, 763, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AleI	CACNNNNGTG	1 cut(s)	869
AluBI	AGCT	9 cut(s)	17, 24, 290, 308, 362, 414, 584, 848, 887
AluI	AGCT	9 cut(s)	17, 24, 290, 308, 362, 414, 584, 848, 887
Alw26I	GTCTC	4 cut(s)	193, 401, 412, 668
AlwI	GGATC	1 cut(s)	565
AoxI	GGCC	5 cut(s)	44, 330, 646, 1001, 1068
ApeKI	GCWGC	9 cut(s)	14, 350, 353, 584, 698, 848, 947, 1043, 1046
ApoI	RAATTY	2 cut(s)	69, 428
AsiGI	ACCGGT	1 cut(s)	1082
Asp700I	GAANNNNTTC	1 cut(s)	115
AspS9I	GGNCC	5 cut(s)	330, 570, 647, 929, 1001
AsuC2I	CCSGG	1 cut(s)	1142
AvaII	GGWCC	2 cut(s)	570, 929
BanI	GGYRCC	1 cut(s)	98
BauI	CACGAG	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	737
BbvI	GCAGC	9 cut(s)	26, 337, 340, 571, 685, 835, 959, 1055, 1058
BccI	CCATC	2 cut(s)	460, 926
BciT130I	CCWGG	3 cut(s)	108, 765, 816
BcnI	CCSGG	1 cut(s)	1142
BcoDI	GTCTC	4 cut(s)	193, 401, 412, 668
BfaI	CTAG	2 cut(s)	63, 854
BfmI	CTRYAG	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	1055
Bme1390I	CCNGG	4 cut(s)	108, 765, 816, 1142
Bme18I	GGWCC	2 cut(s)	570, 929
BmgBI	CACGTC	1 cut(s)	422
BmgT120I	GGNCC	5 cut(s)	330, 570, 647, 929, 1001
BmiI	GGNNCC	5 cut(s)	85, 100, 252, 387, 930
BmrFI	CCNGG	4 cut(s)	108, 765, 816, 1142
BmsI	GCATC	2 cut(s)	484, 1067
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	2 cut(s)	378, 692
Bpu10I	CCTNAGC	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	436
BpuMI	CCSGG	1 cut(s)	1142
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	157, 763, 815
BsaWI	WCCGGW	1 cut(s)	1082
Bsc4I	CCNNNNNNNGG	2 cut(s)	738, 821
Bse118I	RCCGGY	1 cut(s)	1082
Bse1I	ACTGG	4 cut(s)	237, 436, 572, 1137
Bse3DI	GCAATG	4 cut(s)	231, 294, 792, 1125
BseBI	CCWGG	3 cut(s)	108, 765, 816
BseDI	CCNNGG	3 cut(s)	157, 763, 815
BseGI	GGATG	2 cut(s)	167, 499
BseLI	CCNNNNNNNGG	2 cut(s)	738, 821
BseMI	GCAATG	4 cut(s)	231, 294, 792, 1125
BseMII	CTCAG	1 cut(s)	728
BseNI	ACTGG	4 cut(s)	237, 436, 572, 1137
BseXI	GCAGC	9 cut(s)	26, 337, 340, 571, 685, 835, 959, 1055, 1058
BsgI	GTGCAG	2 cut(s)	375, 834
BshFI	GGCC	5 cut(s)	46, 332, 648, 1003, 1070
BshNI	GGYRCC	1 cut(s)	98
BshTI	ACCGGT	1 cut(s)	1082
BsiSI	CCGG	2 cut(s)	1083, 1142
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	2 cut(s)	738, 821
BsmAI	GTCTC	4 cut(s)	193, 401, 412, 668
BsmBI	CGTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	391
BsmI	GAATGC	2 cut(s)	1045, 1120
BsnI	GGCC	5 cut(s)	46, 332, 648, 1003, 1070
Bso31I	GGTCTC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	557
BspACI	CCGC	3 cut(s)	5, 926, 1023
BspANI	GGCC	5 cut(s)	46, 332, 648, 1003, 1070
BspCNI	CTCAG	1 cut(s)	729
BspLI	GGNNCC	5 cut(s)	85, 100, 252, 387, 930
BspPI	GGATC	1 cut(s)	565
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	4 cut(s)	231, 294, 792, 1125
BsrFI	RCCGGY	1 cut(s)	1082
BsrI	ACTGG	4 cut(s)	237, 436, 572, 1137
BssAI	RCCGGY	1 cut(s)	1082
BssECI	CCNNGG	3 cut(s)	157, 763, 815
BssMI	GATC	1 cut(s)	557
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	157
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	3 cut(s)	108, 765, 816
Bst4CI	ACNGT	2 cut(s)	179, 574
Bst6I	CTCTTC	1 cut(s)	672
BstAPI	GCANNNNNTGC	1 cut(s)	748
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	1 cut(s)	737
BstENI	CCTNNNNNAGG	1 cut(s)	736
BstF5I	GGATG	2 cut(s)	167, 499
BstKTI	GATC	1 cut(s)	560
BstMAI	GTCTC	4 cut(s)	193, 401, 412, 668
BstMBI	GATC	1 cut(s)	557
BstNI	CCWGG	3 cut(s)	108, 765, 816
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	4 cut(s)	106, 763, 814, 1140
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	9 cut(s)	26, 337, 340, 571, 685, 835, 959, 1055, 1058
BstV2I	GAAGAC	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	1099
BsuRI	GGCC	5 cut(s)	46, 332, 648, 1003, 1070
BtrI	CACGTC	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	167, 499
BtsIMutI	CAGTG	4 cut(s)	184, 244, 1016, 1130
Cac8I	GCNNGC	1 cut(s)	876
Cfr10I	RCCGGY	1 cut(s)	1082
Cfr13I	GGNCC	5 cut(s)	330, 570, 647, 929, 1001
Csp6I	GTAC	1 cut(s)	575
CspAI	ACCGGT	1 cut(s)	1082
CviAII	CATG	4 cut(s)	52, 120, 135, 976
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	1 cut(s)	737
DpnI	GATC	1 cut(s)	559
DpnII	GATC	1 cut(s)	557
DrdI	GACNNNNNNGTC	1 cut(s)	626
DseDI	GACNNNNNNGTC	1 cut(s)	626
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
Eco130I	CCWWGG	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	570, 929
Eco57I	CTGAAG	3 cut(s)	240, 534, 546
EcoNI	CCTNNNNNAGG	1 cut(s)	736
EcoO109I	RGGNCCY	1 cut(s)	929
EcoRII	CCWGG	3 cut(s)	106, 763, 814
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	412
FaeI	CATG	4 cut(s)	55, 123, 138, 979
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	4 cut(s)	51, 119, 134, 975
FauI	CCCGC	1 cut(s)	919
FauNDI	CATATG	1 cut(s)	880
FokI	GGATG	2 cut(s)	174, 506
FspBI	CTAG	2 cut(s)	63, 854
GsuI	CTGGAG	2 cut(s)	378, 692
HaeIII	GGCC	5 cut(s)	46, 332, 648, 1003, 1070
HapII	CCGG	2 cut(s)	1083, 1142
Hin1II	CATG	4 cut(s)	55, 123, 138, 979
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HindIII	AAGCTT	2 cut(s)	22, 412
HinfI	GANTC	2 cut(s)	233, 807
HpaII	CCGG	2 cut(s)	1083, 1142
Hpy166II	GTNNAC	2 cut(s)	913, 1102
Hpy188I	TCNGA	3 cut(s)	232, 802, 1011
Hpy188III	TCNNGA	3 cut(s)	441, 512, 671
Hpy8I	GTNNAC	2 cut(s)	913, 1102
HpyAV	CCTTC	5 cut(s)	36, 264, 472, 885, 1060
HpyCH4III	ACNGT	2 cut(s)	179, 574
HpyCH4IV	ACGT	1 cut(s)	421
HpyF3I	CTNAG	1 cut(s)	737
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	4 cut(s)	55, 123, 138, 979
Kzo9I	GATC	1 cut(s)	557
LmnI	GCTCC	2 cut(s)	256, 359
Lsp1109I	GCAGC	9 cut(s)	26, 337, 340, 571, 685, 835, 959, 1055, 1058
LweI	GCATC	2 cut(s)	484, 1067
MaeI	CTAG	2 cut(s)	63, 854
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	3 cut(s)	438, 716, 860
MalI	GATC	1 cut(s)	559
MboI	GATC	1 cut(s)	557
MboII	GAAGA	4 cut(s)	48, 527, 539, 659
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	7 cut(s)	30, 69, 146, 267, 428, 753, 1168
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	8 cut(s)	272, 646, 675, 732, 761, 808, 821, 1081
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	4 cut(s)	75, 396, 474, 1158
MslI	CAYNNNNRTG	2 cut(s)	869, 1097
MspI	CCGG	2 cut(s)	1083, 1142
MspR9I	CCNGG	4 cut(s)	108, 765, 816, 1142
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	2 cut(s)	1045, 1120
MvaI	CCWGG	3 cut(s)	108, 765, 816
NciI	CCSGG	1 cut(s)	1142
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	1 cut(s)	557
NlaIII	CATG	4 cut(s)	55, 123, 138, 979
NlaIV	GGNNCC	5 cut(s)	85, 100, 252, 387, 930
NmeAIII	GCCGAG	2 cut(s)	72, 968
NmuCI	GTSAC	2 cut(s)	438, 860
NspI	RCATGY	1 cut(s)	55
OliI	CACNNNNGTG	1 cut(s)	869
PctI	GAATGC	2 cut(s)	1045, 1120
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	233, 807
PfoI	TCCNGGA	1 cut(s)	106
PinAI	ACCGGT	1 cut(s)	1082
PpuMI	RGGWCCY	1 cut(s)	929
Psp5II	RGGWCCY	1 cut(s)	929
Psp6I	CCWGG	3 cut(s)	106, 763, 814
PspGI	CCWGG	3 cut(s)	106, 763, 814
PspN4I	GGNNCC	5 cut(s)	85, 100, 252, 387, 930
PspPI	GGNCC	5 cut(s)	330, 570, 647, 929, 1001
PspPPI	RGGWCCY	1 cut(s)	929
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
RseI	CAYNNNNRTG	2 cut(s)	869, 1097
SaqAI	TTAA	4 cut(s)	75, 396, 474, 1158
Sau3AI	GATC	1 cut(s)	557
Sau96I	GGNCC	5 cut(s)	330, 570, 647, 929, 1001
ScrFI	CCNGG	4 cut(s)	108, 765, 816, 1142
SfaNI	GCATC	2 cut(s)	484, 1067
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	2 cut(s)	570, 929
SmiMI	CAYNNNNRTG	2 cut(s)	869, 1097
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	7 cut(s)	30, 69, 146, 267, 428, 753, 1168
SsiI	CCGC	3 cut(s)	5, 926, 1023
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	2 cut(s)	63, 854
StyD4I	CCNGG	4 cut(s)	106, 763, 814, 1140
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	179, 574
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	2 cut(s)	432, 713
TasI	AATT	7 cut(s)	30, 69, 146, 267, 428, 753, 1168
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	233, 807
Tru1I	TTAA	4 cut(s)	75, 396, 474, 1158
Tru9I	TTAA	4 cut(s)	75, 396, 474, 1158
TscAI	CASTG	4 cut(s)	184, 244, 1023, 1137
TseFI	GTSAC	2 cut(s)	438, 860
TseI	GCWGC	9 cut(s)	14, 350, 353, 584, 698, 848, 947, 1043, 1046
Tsp45I	GTSAC	2 cut(s)	438, 860
TspDTI	ATGAA	7 cut(s)	108, 123, 283, 773, 897, 955, 1044
TspRI	CASTG	4 cut(s)	184, 244, 1023, 1137
VpaK11BI	GGWCC	2 cut(s)	570, 929
XagI	CCTNNNNNAGG	1 cut(s)	736
XapI	RAATTY	2 cut(s)	69, 428
XceI	RCATGY	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	115
XspI	CTAG	2 cut(s)	63, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.