Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Forward (+)

64613874 .. 64617474

Gene Structure 3601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0469300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCCGATGAAAACTCGGACCTCGGCTAGGCCAACATGCAGGTCGAAAATCTGGTGGGCAGGGAAGGCCGTCATCCAAGTTAAGGTAACTGCCGTCATGGCCGCCTCAAGAGGAGAACCAGACCAACACAATAATGAAGTGCCATCCAGCAAAGGTCTTGCTACATCACCGTACCAATCCTGGCTTGAAATGTCATCAGAAGAAATGGATGCTGAAAAAATGAGGCAAGATATACTTCAACTATTCTTCAAGCTCACAAGAGACTTCTCAGAGTCTGAATCTCAAAGGAAGGATCTTAAGGAAAAGCTTGGGCAGAGTGAAGCTGAAAAGAAAAAGGTTAAGAAACAGCTCGAGCAAAGTGAGGCTCAAAAGAACGATCTCAAGAAAGAGCTTGAGCGGACTGAAGCTGAGAAGGATGGGCTCAAGAAGAATCTTGAGCTGACTGAAGCTCAAATGAAAGTGCAGCTCAAAGTTCTAGAGCAGCGTGAGATGCAACTGCAACAGCTGAATGATGGGGCTGGCCTAGAGAAAAAGAAGGCCAATGCATTGGTGTCGTGGTTAGCAGAAGAGTACAAGAAATGTCTGGAGGAGAATGAAAAATTTCACTGGATAAACATTGAGTTGGAGAAGCAGCTTGATGCAAAGAAGAAGCGCATAGTTGAATTGAAGGTTAGCACTAATTATTTTCGAGCACAGTTGAGGAAAATGGAAGAGGAATTGGCAGATCGTGAAGCATTAAACCTCATGCCTCTTGTCAAAACAAATGAAGTGAATGTGGAACTGCAGATCATGAAGCATTCAACCTCATGCCTCTTGTCAAAACAAATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005835 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016631 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

277

Amino Acids

32.2

Weight (kDa)

8.97

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	2 cut(s)	102, 397
AclWI	GGATC	1 cut(s)	300
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	2 cut(s)	423, 465
AfaI	GTAC	2 cut(s)	173, 572
AfiI	CCNNNNNNNGG	2 cut(s)	27, 82
AflII	CTTAAG	1 cut(s)	296
AgsI	TTSAA	6 cut(s)	188, 239, 250, 662, 667, 801
AjnI	CCWGG	1 cut(s)	179
Alw21I	GWGCWC	1 cut(s)	694
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	300
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	5 cut(s)	29, 66, 99, 520, 537
ApeKI	GCWGC	3 cut(s)	463, 481, 631
ApoI	RAATTY	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	600
AspLEI	GCGC	1 cut(s)	654
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	159
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	3 cut(s)	475, 493, 643
BccI	CCATC	3 cut(s)	151, 410, 506
BceAI	ACGGC	2 cut(s)	53, 77
BcgI	CGANNNNNNTGC	2 cut(s)	534, 568
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	3 cut(s)	27, 476, 524
BfmI	CTRYAG	1 cut(s)	782
BfrI	CTTAAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	30
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	4 cut(s)	102, 464, 482, 632
BlsI	GCNGC	4 cut(s)	103, 465, 483, 633
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	18
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	3 cut(s)	199, 480, 628
BpmI	CTGGAG	1 cut(s)	605
BpuEI	CTTGAG	5 cut(s)	91, 365, 407, 413, 455
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 82
Bse1I	ACTGG	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	4 cut(s)	72, 143, 214, 421
BseLI	CCNNNNNNNGG	2 cut(s)	27, 82
BseMII	CTCAG	2 cut(s)	282, 399
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	2 cut(s)	126, 602
BseXI	GCAGC	3 cut(s)	475, 493, 643
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	5 cut(s)	31, 68, 101, 522, 539
BsiHKAI	GWGCWC	1 cut(s)	694
BsiHKCI	CYCGRG	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	27, 82
BsmAI	GTCTC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	5 cut(s)	31, 68, 101, 522, 539
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	423, 694
Bsp143I	GATC	4 cut(s)	292, 376, 724, 786
BspACI	CCGC	2 cut(s)	102, 397
BspANI	GGCC	5 cut(s)	31, 68, 101, 522, 539
BspCNI	CTCAG	2 cut(s)	281, 400
BspHI	TCATGA	1 cut(s)	789
BspMAI	CTGCAG	1 cut(s)	786
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	300
BspTI	CTTAAG	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	292, 376, 724, 786
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	171, 696
Bst6I	CTCTTC	2 cut(s)	561, 705
BstAFI	CTTAAG	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	2 cut(s)	268, 408
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstF5I	GGATG	4 cut(s)	72, 143, 214, 421
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	4 cut(s)	295, 379, 727, 789
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	4 cut(s)	292, 376, 724, 786
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 98, 490
BstNI	CCWGG	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	782
BstV1I	GCAGC	3 cut(s)	475, 493, 643
BstX2I	RGATCY	1 cut(s)	292
BstXI	CCANNNNNNTGG	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	5 cut(s)	31, 68, 101, 522, 539
BtsCI	GGATG	4 cut(s)	72, 143, 214, 421
BtsIMutI	CAGTG	1 cut(s)	604
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	520
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	1 cut(s)	654
Cfr13I	GGNCC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	172, 571
CviAII	CATG	5 cut(s)	36, 97, 745, 790, 807
CviQI	GTAC	2 cut(s)	172, 571
DdeI	CTNAG	2 cut(s)	268, 408
DpnI	GATC	4 cut(s)	294, 378, 726, 788
DpnII	GATC	4 cut(s)	292, 376, 724, 786
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	561, 705
EarI	CTCTTC	2 cut(s)	561, 705
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	423, 465
Eco88I	CYCGRG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	423
FaeI	CATG	5 cut(s)	39, 100, 748, 793, 810
FaiI	YATR	7 cut(s)	37, 98, 233, 656, 746, 791, 808
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FatI	CATG	5 cut(s)	35, 96, 744, 789, 806
Fnu4HI	GCNGC	4 cut(s)	102, 464, 482, 632
FokI	GGATG	4 cut(s)	59, 130, 221, 428
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	4 cut(s)	102, 464, 482, 632
FspBI	CTAG	3 cut(s)	27, 476, 524
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	4 cut(s)	102, 464, 482, 632
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	5 cut(s)	31, 68, 101, 522, 539
HhaI	GCGC	1 cut(s)	654
Hin1II	CATG	5 cut(s)	39, 100, 748, 793, 810
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	272, 278, 430
HphI	GGTGA	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	18, 199, 271, 277
Hpy188III	TCNNGA	8 cut(s)	108, 382, 424, 434, 476, 584, 728, 790
HpyAV	CCTTC	5 cut(s)	58, 283, 406, 529, 661
HpyCH4III	ACNGT	2 cut(s)	171, 696
HpyCH4V	TGCA	7 cut(s)	39, 463, 493, 499, 545, 641, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 98, 490
HpyF3I	CTNAG	2 cut(s)	268, 408
Hsp92II	CATG	5 cut(s)	39, 100, 748, 793, 810
HspAI	GCGC	1 cut(s)	652
Kzo9I	GATC	4 cut(s)	292, 376, 724, 786
Lsp1109I	GCAGC	3 cut(s)	475, 493, 643
LweI	GCATC	3 cut(s)	199, 480, 628
MaeI	CTAG	3 cut(s)	27, 476, 524
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	294, 378, 726, 788
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	4 cut(s)	292, 376, 724, 786
MboII	GAAGA	6 cut(s)	212, 238, 439, 578, 658, 722
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	423, 694
MluCI	AATT	4 cut(s)	599, 662, 679, 716
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	603
Mph1103I	ATGCAT	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	4 cut(s)	81, 297, 339, 737
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	505
MspCI	CTTAAG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	3 cut(s)	65, 98, 490
NdeII	GATC	4 cut(s)	292, 376, 724, 786
NlaIII	CATG	5 cut(s)	39, 100, 748, 793, 810
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	789
PctI	GAATGC	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	278, 430
PkrI	GCNGC	4 cut(s)	103, 465, 483, 633
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	18
PspXI	VCTCGAGB	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	786
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	505
RsaI	GTAC	2 cut(s)	173, 572
RsaNI	GTAC	2 cut(s)	172, 571
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	81, 297, 339, 737
SatI	GCNGC	4 cut(s)	102, 464, 482, 632
Sau3AI	GATC	4 cut(s)	292, 376, 724, 786
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	2 cut(s)	423, 694
SfaNI	GCATC	3 cut(s)	199, 480, 628
SfcI	CTRYAG	1 cut(s)	782
Sfr274I	CTCGAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	18
SlaI	CTCGAG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	7 cut(s)	106, 296, 350, 380, 392, 422, 434
SmoI	CTYRAG	7 cut(s)	106, 296, 350, 380, 392, 422, 434
Sse9I	AATT	4 cut(s)	599, 662, 679, 716
SsiI	CCGC	2 cut(s)	102, 397
SspMI	CTAG	3 cut(s)	27, 476, 524
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	171, 696
TaqI	TCGA	3 cut(s)	44, 351, 688
TasI	AATT	4 cut(s)	599, 662, 679, 716
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	278, 430
Tru1I	TTAA	4 cut(s)	81, 297, 339, 737
Tru9I	TTAA	4 cut(s)	81, 297, 339, 737
TscAI	CASTG	1 cut(s)	611
TseI	GCWGC	3 cut(s)	463, 481, 631
TspDTI	ATGAA	6 cut(s)	23, 150, 470, 609, 780, 806
TspRI	CASTG	1 cut(s)	611
Vha464I	CTTAAG	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	18
XagI	CCTNNNNNAGG	1 cut(s)	25
XapI	RAATTY	1 cut(s)	599
XbaI	TCTAGA	1 cut(s)	475
XceI	RCATGY	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	3 cut(s)	27, 476, 524
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.