Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Reverse (-)

7256656 .. 7259854

Gene Structure 3199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAGAAACTCGGTGAAATGGGAAACGGAATTAACCGGAGATCGCAGCAGGAGAAGAGAAGCCGATGAGTCCTCGGAGACACCAAAGATCGTAAAGAAGGAGAAGCGTAGTAAGACCGTAATTGCTTCATTACGGCCTCAACAACCGCCGATTCAGGAAGAAGAAGAACAAGGAATTGCTGATCGGAGAGCTATAAGATCTCAGTATCTTGCTCTTACCCACAAGATCAAAGATGCTAAAGATGACTTGACAAAAATTGATTCTAACAAGTTCAACAGTATCATTAATGAGGTTGAGAATTTGCACCAGAAAGTTCGGAAGCCTAGAGAGCAGATTGCTGATGCGGAGGCGCTTTTGGATTTAACGAATAGTGTGGTTTCATCGGTGAAATCGCAATCAGCTCATGGTGGTGTTTCTCCAGCTGAGTTTGTTAATGCCTTGATCAATGGGTTTGGCAAAACTTCTTTAAGAATTGATGCTGATGAAAATACACAAGTGTCAATGAAGTGGAAGGATCTTGGGTTTACGGTCTGTTCCACGGTTTTGGTATCATGTGGTTGTACAACAATGATGGGTCCTATGTATAGTGAAATGAAACAAAGGAAAAGTAGAGTGGGCAACAGAAAACGTACAAAGCCTGGTGCTGGTGTTAAGCCAGAGGAGGTTGATGATACAGAAGCTGAAAAGAAAAGTGATACAGACAATAACATGGCAGTAATGTTTAACATCTTGCGGAAAAACAAACGTGTCAAGATTGAGAATTTGGTGCTCAATAGGAAATCATTTGCTCAGACAGCAGAGAATATGTTCGCACTTTCATTCCTGGTGAAAGATGGACGTGTTGAGATAACTGTTGATAACAATGGTTCTCATTTTGTTGAGCCAAGGAATGCTCCTGCAGCAAACCTGGTGCTGTCAGGGGAGGTCGCTTATAACCATTTTGTTCTTAGATTTGATTACAAAGATTGGGAGCCAATGAGCAAAATGGTGGCAGTGGGAGAGGAGCTGATGCCACTCAGGGAAACCAAAGTTGCTCAAGATTCAATAGAACTGTCGAGGAAACAAGGTTCGGTGATTCAAGAGGAAACGGTCGTCGAAGATTCTTCTAACATGGAAGGCGATAATGAAGATAGTAAAAATGGTGGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nse4_C

Protein Analysis

383

Amino Acids

42.97

Weight (kDa)

6.59

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nse4_C	PF08743	250 - 337	1.3e-22	Nse4 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	933
AciI	CCGC	3 cut(s)	146, 344, 733
AclWI	GGATC	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	298, 760
AfaI	GTAC	2 cut(s)	562, 631
AfiI	CCNNNNNNNGG	1 cut(s)	644
AflIII	ACRYGT	2 cut(s)	745, 838
AgsI	TTSAA	3 cut(s)	274, 1044, 1079
AjiI	CACGTC	1 cut(s)	839
AjnI	CCWGG	3 cut(s)	637, 822, 906
AloI	GAACNNNNNNTCC	2 cut(s)	1051, 1083
AluBI	AGCT	5 cut(s)	191, 401, 422, 680, 1006
AluI	AGCT	5 cut(s)	191, 401, 422, 680, 1006
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	522
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	45, 899
ApoI	RAATTY	2 cut(s)	298, 760
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	4 cut(s)	25, 397, 838, 1084
AvaII	GGWCC	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	771
BbvI	GCAGC	2 cut(s)	57, 911
BccI	CCATC	2 cut(s)	565, 827
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	3 cut(s)	639, 824, 908
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	897
BfoI	RGCGCY	1 cut(s)	353
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	2 cut(s)	46, 900
BlsI	GCNGC	2 cut(s)	47, 901
Bme1390I	CCNGG	3 cut(s)	639, 824, 908
Bme18I	GGWCC	1 cut(s)	575
BmgBI	CACGTC	1 cut(s)	839
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	2 cut(s)	576, 972
BmrFI	CCNGG	3 cut(s)	639, 824, 908
BmsI	GCATC	4 cut(s)	223, 331, 466, 999
BpmI	CTGGAG	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	1020
BsaJI	CCNNGG	3 cut(s)	72, 537, 884
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
BseBI	CCWGG	3 cut(s)	639, 824, 908
BseDI	CCNNGG	3 cut(s)	72, 537, 884
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMII	CTCAG	4 cut(s)	215, 414, 803, 1030
BseRI	GAGGAG	2 cut(s)	674, 1016
BseXI	GCAGC	2 cut(s)	57, 911
Bsh1285I	CGRYCG	1 cut(s)	1092
BshFI	GGCC	1 cut(s)	136
BsiEI	CGRYCG	1 cut(s)	1092
BsiHKAI	GWGCWC	1 cut(s)	771
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	895
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	771
Bsp1407I	TGTACA	1 cut(s)	560
Bsp143I	GATC	7 cut(s)	40, 87, 181, 197, 225, 441, 514
BspACI	CCGC	3 cut(s)	146, 344, 733
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	4 cut(s)	214, 415, 802, 1029
BspLI	GGNNCC	2 cut(s)	576, 972
BspMAI	CTGCAG	1 cut(s)	901
BspPI	GGATC	1 cut(s)	522
BsrGI	TGTACA	1 cut(s)	560
BssECI	CCNNGG	3 cut(s)	72, 537, 884
BssMI	GATC	7 cut(s)	40, 87, 181, 197, 225, 441, 514
BssT1I	CCWWGG	1 cut(s)	884
Bst2UI	CCWGG	3 cut(s)	639, 824, 908
Bst4CI	ACNGT	7 cut(s)	118, 278, 529, 541, 853, 1053, 1090
Bst6I	CTCTTC	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	560
BstDEI	CTNAG	5 cut(s)	201, 423, 789, 947, 1016
BstDSI	CCRYGG	1 cut(s)	537
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	7 cut(s)	43, 90, 184, 200, 228, 444, 517
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	7 cut(s)	40, 87, 181, 197, 225, 441, 514
BstMCI	CGRYCG	1 cut(s)	1092
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 794, 899
BstNI	CCWGG	3 cut(s)	639, 824, 908
BstSCI	CCNGG	3 cut(s)	637, 822, 906
BstSFI	CTRYAG	1 cut(s)	897
BstV1I	GCAGC	2 cut(s)	57, 911
BstX2I	RGATCY	2 cut(s)	197, 514
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	2 cut(s)	197, 514
BsuRI	GGCC	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	537
BtrI	CACGTC	1 cut(s)	839
BtsI	GCAGTG	1 cut(s)	999
BtsIMutI	CAGTG	1 cut(s)	999
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	575
CsiI	ACCWGGT	1 cut(s)	906
Csp6I	GTAC	2 cut(s)	561, 630
CviAII	CATG	4 cut(s)	404, 552, 709, 1111
CviQI	GTAC	2 cut(s)	561, 630
DdeI	CTNAG	5 cut(s)	201, 423, 789, 947, 1016
DpnI	GATC	7 cut(s)	42, 89, 183, 199, 227, 443, 516
DpnII	GATC	7 cut(s)	40, 87, 181, 197, 225, 441, 514
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	884
Eco47I	GGWCC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	3 cut(s)	637, 822, 906
EcoT14I	CCWWGG	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	884
FaeI	CATG	4 cut(s)	407, 555, 712, 1114
FaiI	YATR	9 cut(s)	194, 405, 553, 581, 585, 710, 806, 933, 1112
FatI	CATG	4 cut(s)	403, 551, 708, 1110
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	46, 900
Fsp4HI	GCNGC	2 cut(s)	46, 900
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	2 cut(s)	46, 900
GsuI	CTGGAG	1 cut(s)	402
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	4 cut(s)	407, 555, 712, 1114
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	6 cut(s)	68, 151, 260, 1040, 1075, 1100
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	4 cut(s)	25, 397, 838, 1084
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	4 cut(s)	76, 186, 318, 792
Hpy188III	TCNNGA	4 cut(s)	155, 751, 1037, 1079
Hpy8I	GTNNAC	1 cut(s)	525
Hpy99I	CGWCG	1 cut(s)	1097
HpyAV	CCTTC	3 cut(s)	91, 505, 1109
HpyCH4III	ACNGT	7 cut(s)	118, 278, 529, 541, 853, 1053, 1090
HpyCH4IV	ACGT	3 cut(s)	628, 745, 838
HpyCH4V	TGCA	2 cut(s)	304, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 794, 899
HpyF3I	CTNAG	5 cut(s)	201, 423, 789, 947, 1016
HpySE526I	ACGT	3 cut(s)	628, 745, 838
Hsp92II	CATG	4 cut(s)	407, 555, 712, 1114
HspAI	GCGC	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	7 cut(s)	40, 87, 181, 197, 225, 441, 514
LmnI	GCTCC	3 cut(s)	898, 970, 1003
Lsp1109I	GCAGC	2 cut(s)	57, 911
LweI	GCATC	4 cut(s)	223, 331, 466, 999
MabI	ACCWGGT	1 cut(s)	906
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	3 cut(s)	628, 745, 838
MalI	GATC	7 cut(s)	42, 89, 183, 199, 227, 443, 516
MboI	GATC	7 cut(s)	40, 87, 181, 197, 225, 441, 514
MboII	GAAGA	7 cut(s)	66, 170, 173, 176, 1095, 1109, 1139
MflI	RGATCY	2 cut(s)	197, 514
MhlI	GDGCHC	1 cut(s)	771
MluCI	AATT	7 cut(s)	29, 120, 174, 255, 298, 471, 760
MlyI	GAGTC	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	806
MseI	TTAA	7 cut(s)	32, 285, 362, 432, 467, 651, 723
MslI	CAYNNNNRTG	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	3 cut(s)	639, 824, 908
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	3 cut(s)	639, 824, 908
MwoI	GCNNNNNNNGC	3 cut(s)	328, 794, 899
NdeII	GATC	7 cut(s)	40, 87, 181, 197, 225, 441, 514
NlaIII	CATG	4 cut(s)	407, 555, 712, 1114
NlaIV	GGNNCC	2 cut(s)	576, 972
PctI	GAATGC	1 cut(s)	895
PdmI	GAANNNNTTC	1 cut(s)	806
PfeI	GAWTC	5 cut(s)	151, 260, 1040, 1075, 1100
PkrI	GCNGC	2 cut(s)	47, 901
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	575
PshBI	ATTAAT	1 cut(s)	285
PsiI	TTATAA	1 cut(s)	933
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	3 cut(s)	637, 822, 906
PspGI	CCWGG	3 cut(s)	637, 822, 906
PspN4I	GGNNCC	2 cut(s)	576, 972
PspPI	GGNCC	1 cut(s)	575
PspPPI	RGGWCCY	1 cut(s)	575
PstI	CTGCAG	1 cut(s)	901
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	2 cut(s)	197, 514
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	562, 631
RsaNI	GTAC	2 cut(s)	561, 630
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	7 cut(s)	32, 285, 362, 432, 467, 651, 723
SatI	GCNGC	2 cut(s)	46, 900
Sau3AI	GATC	7 cut(s)	40, 87, 181, 197, 225, 441, 514
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	3 cut(s)	639, 824, 908
SduI	GDGCHC	1 cut(s)	771
SexAI	ACCWGGT	1 cut(s)	906
SfaNI	GCATC	4 cut(s)	223, 331, 466, 999
SfcI	CTRYAG	1 cut(s)	897
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	1035
SmoI	CTYRAG	1 cut(s)	1035
Sse9I	AATT	7 cut(s)	29, 120, 174, 255, 298, 471, 760
SsiI	CCGC	3 cut(s)	146, 344, 733
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	637, 822, 906
StyI	CCWWGG	1 cut(s)	884
TaaI	ACNGT	7 cut(s)	118, 278, 529, 541, 853, 1053, 1090
TaiI	ACGT	3 cut(s)	631, 748, 841
TaqI	TCGA	2 cut(s)	1055, 1095
TasI	AATT	7 cut(s)	29, 120, 174, 255, 298, 471, 760
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	5 cut(s)	151, 260, 1040, 1075, 1100
Tru1I	TTAA	7 cut(s)	32, 285, 362, 432, 467, 651, 723
Tru9I	TTAA	7 cut(s)	32, 285, 362, 432, 467, 651, 723
TscAI	CASTG	1 cut(s)	999
TseI	GCWGC	2 cut(s)	45, 899
TspDTI	ATGAA	7 cut(s)	117, 369, 498, 518, 608, 807, 1140
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	999
VpaK11BI	GGWCC	1 cut(s)	575
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	2 cut(s)	298, 760
XmnI	GAANNNNTTC	1 cut(s)	806
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.