Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Forward (+)

31831021 .. 31835071

Gene Structure 4051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG313200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCAAATCATTCTCGTTTTGTTGAATGCTGCCAAGGCCACTGAAGTGGCATCTCGTGAGGTGGTTTATAGACATTTTGTGTTCCGATTTGATTTCAAGGACTGGAAGGATGCCAAAAATTATGGGTGCGAAGTGAATGATAAAGTTGATTTCAACCGGAAGAAACTTTTGCAGAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nse4_C

Protein Analysis

60

Amino Acids

7.18

Weight (kDa)

9.61

Isoelectric Point (pI)

9.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	63
AgsI	TTSAA	3 cut(s)	25, 97, 154
AleI	CACNNNNGTG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	29
BauI	CACGAG	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmsI	GCATC	2 cut(s)	59, 100
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	33
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	39
CviJI	RGCY	1 cut(s)	38
CviKI_1	RGCY	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaiI	YATR	2 cut(s)	69, 123
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	157
HpaII	CCGG	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	4, 172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
LpnPI	CCDG	2 cut(s)	88, 170
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	59, 100
MboII	GAAGA	1 cut(s)	172
MluCI	AATT	1 cut(s)	118
MnlI	CCTC	1 cut(s)	52
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	35
OliI	CACNNNNGTG	1 cut(s)	44
PctI	GAATGC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	44
SatI	GCNGC	1 cut(s)	30
SetI	ASST	1 cut(s)	63
SfaNI	GCATC	2 cut(s)	59, 100
SgeI	CNNG	7 cut(s)	26, 46, 66, 68, 109, 115, 169
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	33
TasI	AATT	1 cut(s)	118
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	1 cut(s)	29
TspRI	CASTG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.