Prupe.6G015300_v2.0.a1

Non-structural maintenance of

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
1103176 .. 1106421
3246 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G015300.1

Sequence Viewer

Length: 1188 bp
ATGCCCAAGTCTGCGAAACGCCAACGGACCCGAAGCCAAAGCGGGGACGTTGACGACGCCGAGCAACTCAGAGCCGTGAAGCGCGAGAGGGTCAACGCCAACGCCGGCCGAGTTGAAAATGAGTCGGATCTCCCGAGTGAGCAAGACTCCGTTCAACGGCGAACCCTTCGGTCCGACTACCTTGCCGTCAAGAACCTCATCAGTGAGAAAAGAGATGATTTAATGTGTCCAGAGTCGGAGAGGTTCTGTCTAATCATCAATAAAGTTGAGAAATTGCACGAGCAAGTTCAGAAGCCAAGGGAACAAGTAGCAGATGCAGAGGCGCTGCTGGACATCACTAACACACTGTGGACGTCTGTTAAGTCACAGTCCAGTGCAGGAATTAGCCCATCAGACTTTGTTACTTGTGTGCTTAATAATTTTAAGCAATTAAATAGTTCATTAGCCAGCCAAGAGGATGCGCCTGTCTCAATTAAGTGGAAGGATATTGGACTTGCTGTTGCACCCATTTTCAAGAGGGCTCATGGGTGTTGTACCATGCTTGGACCCATGAATACCGAGTTGAAGCAAAGGAAGGCTGTGGTTCGCAGCAAACATGCAAAGCCTACCACAACTGATCGACCTGATGAGATAGATGATACTCAGGGAGAAGAAAAAACTGATACTGACAAGAACATGTCAACAATGTTTGACATTCTTAGAAGGAACAAACGGGTTAGACTTGAAGGCTTGATACTAAATAGGAAGTCTTTTGCACAGACAGTGGAGAACTTATTTGCTCTGTCATTCTTAGTCAAAGATGGCCGGGCTGAAATAACTGTGGATGCAAATGGTTCTCATCTTGTTTCACCTAGGAATGCTCCTGCTGCCAATTTAGTGGCATCACGTGAGGTGGTTTATGATCATTTTGTGTTCCGATTTGATTTCAAGGACTGGAAGTTAATGAAGGATATGTTGCCTGTTGGTGAGGAGCTGATGCCACATAGAAGCCCGCCAAACTCCTTACCTGCATCTCAAGAGGAACCAGCAGCATACAGTTCCCAAACAGCCTTACCCACAACCCCGATTCGAAAACTTTCCAGAAATCGTGGCCGGCTTGTGCAGGAAGAGTCAGTTGTAGAAGAATCTCCTGAAAATGATGATGCTGCTGGAACCAATGTCGTTCGCAGGAGTAAGCGCAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

396

Amino Acids

44.47

Weight (kDa)

8.68

Isoelectric Point (pI)

60.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 356
Acc36I ACCTGC 1 cut(s) 1015
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 42, 992
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 3 cut(s) 106, 802, 1090
AcvI CACGTG 1 cut(s) 887
AcyI GRCGYC 2 cut(s) 57, 353
AdeI CACNNNGTG 1 cut(s) 348
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 2 cut(s) 43, 156
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 6 cut(s) 116, 155, 514, 565, 725, 928
AluBI AGCT 2 cut(s) 973, 1183
AluI AGCT 2 cut(s) 973, 1183
Alw26I GTCTC 1 cut(s) 472
AlwI GGATC 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 133
AoxI GGCC 3 cut(s) 106, 802, 1090
ApeKI GCWGC 5 cut(s) 325, 588, 866, 1028, 1145
Asp700I GAANNNNTTC 1 cut(s) 1075
AspA2I CCTAGG 1 cut(s) 851
AspLEI GCGC 4 cut(s) 84, 325, 463, 1179
AspS9I GGNCC 3 cut(s) 27, 171, 545
AsuC2I CCSGG 1 cut(s) 806
AsuHPI GGTGA 2 cut(s) 840, 977
AsuII TTCGAA 1 cut(s) 1069
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 3 cut(s) 27, 171, 545
AvrII CCTAGG 1 cut(s) 851
BanII GRGCYC 1 cut(s) 523
BarI GAAGNNNNNNTAC 2 cut(s) 717, 749
BauI CACGAG 1 cut(s) 278
BbrPI CACGTG 1 cut(s) 887
BbvI GCAGC 5 cut(s) 312, 600, 853, 1040, 1132
BccI CCATC 2 cut(s) 397, 794
BceAI ACGGC 3 cut(s) 59, 170, 173
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BclI TGATCA 1 cut(s) 901
BcnI CCSGG 1 cut(s) 806
BcoDI GTCTC 1 cut(s) 472
BfaI CTAG 1 cut(s) 852
BfoI RGCGCY 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 1015
BisI GCNGC 5 cut(s) 326, 589, 867, 1029, 1146
BlnI CCTAGG 1 cut(s) 851
BlsI GCNGC 5 cut(s) 327, 590, 868, 1030, 1147
Bme1390I CCNGG 1 cut(s) 806
Bme18I GGWCC 3 cut(s) 27, 171, 545
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 3 cut(s) 27, 171, 545
BmiI GGNNCC 4 cut(s) 29, 547, 1023, 1153
BmrFI CCNGG 1 cut(s) 806
BmsI GCATC 7 cut(s) 304, 448, 814, 890, 966, 1019, 1132
BplI GAGNNNNNCTC 2 cut(s) 131, 163
Bpu14I TTCGAA 1 cut(s) 1069
BpuEI CTTGAG 1 cut(s) 999
BpuMI CCSGG 1 cut(s) 806
BsaAI YACGTR 1 cut(s) 887
BsaHI GRCGYC 2 cut(s) 57, 353
BsaJI CCNNGG 2 cut(s) 296, 851
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 156
Bse118I RCCGGY 2 cut(s) 104, 1092
Bse1I ACTGG 2 cut(s) 372, 938
BseDI CCNNGG 2 cut(s) 296, 851
BseGI GGATG 2 cut(s) 463, 829
BseLI CCNNNNNNNGG 2 cut(s) 43, 156
BseMII CTCAG 2 cut(s) 82, 656
BseNI ACTGG 2 cut(s) 372, 938
BseRI GAGGAG 1 cut(s) 983
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 5 cut(s) 312, 600, 853, 1040, 1132
BsgI GTGCAG 2 cut(s) 396, 1121
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 108, 804, 1092
BsiEI CGRYCG 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 3 cut(s) 105, 805, 1093
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 43, 156
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 862
BsnI GGCC 3 cut(s) 108, 804, 1092
BsoBI CYCGRG 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 1069
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 3 cut(s) 127, 616, 901
BspACI CCGC 2 cut(s) 42, 992
BspANI GGCC 3 cut(s) 108, 804, 1092
BspCNI CTCAG 2 cut(s) 81, 655
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 4 cut(s) 29, 547, 1023, 1153
BspMI ACCTGC 1 cut(s) 1015
BspPI GGATC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 1069
BsrFI RCCGGY 2 cut(s) 104, 1092
BsrI ACTGG 2 cut(s) 372, 938
BssAI RCCGGY 2 cut(s) 104, 1092
BssECI CCNNGG 2 cut(s) 296, 851
BssMI GATC 3 cut(s) 127, 616, 901
BssNI GRCGYC 2 cut(s) 57, 353
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 296, 851
Bst2BI CACGAG 1 cut(s) 278
Bst4CI ACNGT 5 cut(s) 348, 369, 763, 820, 1037
Bst6I CTCTTC 1 cut(s) 1101
BstACI GRCGYC 2 cut(s) 57, 353
BstBAI YACGTR 1 cut(s) 887
BstBI TTCGAA 1 cut(s) 1069
BstC8I GCNNGC 5 cut(s) 106, 448, 992, 1094, 1181
BstDEI CTNAG 4 cut(s) 68, 642, 698, 790
BstF5I GGATG 2 cut(s) 463, 829
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 4 cut(s) 84, 325, 463, 1179
BstKTI GATC 3 cut(s) 130, 619, 904
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 3 cut(s) 127, 616, 901
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 866
BstNSI RCATGY 2 cut(s) 599, 679
BstSCI CCNGG 1 cut(s) 804
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 5 cut(s) 312, 600, 853, 1040, 1132
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 877
BstYI RGATCY 1 cut(s) 127
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 3 cut(s) 108, 804, 1092
BtsCI GGATG 2 cut(s) 463, 829
BtsIMutI CAGTG 4 cut(s) 208, 344, 379, 768
BveI ACCTGC 1 cut(s) 1015
Cac8I GCNNGC 5 cut(s) 106, 448, 992, 1094, 1181
CfoI GCGC 4 cut(s) 84, 325, 463, 1179
Cfr10I RCCGGY 2 cut(s) 104, 1092
Cfr13I GGNCC 3 cut(s) 27, 171, 545
CpoI CGGWCCG 1 cut(s) 171
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 534
CspI CGGWCCG 1 cut(s) 171
CviAII CATG 5 cut(s) 524, 538, 550, 596, 676
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 4 cut(s) 68, 642, 698, 790
DpnI GATC 3 cut(s) 129, 618, 903
DpnII GATC 3 cut(s) 127, 616, 901
DraIII CACNNNGTG 1 cut(s) 348
EaeI YGGCCR 3 cut(s) 106, 802, 1090
EagI CGGCCG 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 1101
EarI CTCTTC 1 cut(s) 1101
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 296, 851
Eco24I GRGCYC 1 cut(s) 523
Eco47I GGWCC 3 cut(s) 27, 171, 545
Eco52I CGGCCG 1 cut(s) 106
Eco72I CACGTG 1 cut(s) 887
Eco88I CYCGRG 1 cut(s) 133
EcoT14I CCWWGG 2 cut(s) 296, 851
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 2 cut(s) 296, 851
FaeI CATG 5 cut(s) 527, 541, 553, 599, 679
FaiI YATR 9 cut(s) 525, 539, 551, 597, 677, 900, 953, 984, 1033
FaqI GGGAC 1 cut(s) 59
FatI CATG 5 cut(s) 523, 537, 549, 595, 675
FauI CCCGC 2 cut(s) 35, 999
FbaI TGATCA 1 cut(s) 901
Fnu4HI GCNGC 5 cut(s) 326, 589, 867, 1029, 1146
FokI GGATG 2 cut(s) 470, 836
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 5 cut(s) 326, 589, 867, 1029, 1146
FspBI CTAG 1 cut(s) 852
GlaI GCGC 4 cut(s) 83, 324, 462, 1178
GluI GCNGC 5 cut(s) 326, 589, 867, 1029, 1146
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 3 cut(s) 108, 804, 1092
HapII CCGG 3 cut(s) 105, 805, 1093
HgaI GACGC 1 cut(s) 65
HhaI GCGC 4 cut(s) 84, 325, 463, 1179
Hin1I GRCGYC 2 cut(s) 57, 353
Hin1II CATG 5 cut(s) 527, 541, 553, 599, 679
Hin6I GCGC 4 cut(s) 82, 323, 461, 1177
HinP1I GCGC 4 cut(s) 82, 323, 461, 1177
HincII GTYRAC 3 cut(s) 52, 94, 681
HindII GTYRAC 3 cut(s) 52, 94, 681
HindIII AAGCTT 1 cut(s) 1181
HinfI GANTC 6 cut(s) 122, 146, 233, 1066, 1109, 1124
HpaII CCGG 3 cut(s) 105, 805, 1093
HphI GGTGA 2 cut(s) 840, 977
Hpy166II GTNNAC 4 cut(s) 52, 94, 351, 681
Hpy188I TCNGA 7 cut(s) 71, 127, 175, 238, 291, 394, 917
Hpy188III TCNNGA 7 cut(s) 133, 190, 230, 514, 1016, 1080, 1130
Hpy8I GTNNAC 4 cut(s) 52, 94, 351, 681
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 6 cut(s) 176, 475, 568, 696, 719, 940
HpyCH4III ACNGT 5 cut(s) 348, 369, 763, 820, 1037
HpyCH4IV ACGT 3 cut(s) 48, 353, 886
HpyCH4V TGCA 9 cut(s) 277, 317, 377, 503, 599, 755, 827, 1010, 1102
HpyF10VI GCNNNNNNNGC 1 cut(s) 866
HpyF3I CTNAG 4 cut(s) 68, 642, 698, 790
HpySE526I ACGT 3 cut(s) 48, 353, 886
Hsp92I GRCGYC 2 cut(s) 57, 353
Hsp92II CATG 5 cut(s) 527, 541, 553, 599, 679
HspAI GCGC 4 cut(s) 82, 323, 461, 1177
KroI GCCGGC 2 cut(s) 104, 1092
KroNI GCCGGC 2 cut(s) 106, 1094
Ksp22I TGATCA 1 cut(s) 901
Kzo9I GATC 3 cut(s) 127, 616, 901
LmnI GCTCC 2 cut(s) 865, 970
Lsp1109I GCAGC 5 cut(s) 312, 600, 853, 1040, 1132
LweI GCATC 7 cut(s) 304, 448, 814, 890, 966, 1019, 1132
MaeI CTAG 1 cut(s) 852
MaeII ACGT 3 cut(s) 48, 353, 886
MaeIII GTNAC 2 cut(s) 363, 400
MalI GATC 3 cut(s) 129, 618, 903
MboI GATC 3 cut(s) 127, 616, 901
MboII GAAGA 3 cut(s) 662, 1118, 1133
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 6 cut(s) 272, 381, 418, 428, 471, 871
MlyI GAGTC 4 cut(s) 131, 140, 242, 1118
MmeI TCCRAC 3 cut(s) 105, 198, 216
MnlI CCTC 9 cut(s) 81, 206, 234, 313, 448, 510, 883, 961, 1012
MroNI GCCGGC 2 cut(s) 104, 1092
MroXI GAANNNNTTC 1 cut(s) 1075
MseI TTAA 7 cut(s) 221, 360, 414, 423, 431, 474, 941
MspI CCGG 3 cut(s) 105, 805, 1093
MspR9I CCNGG 1 cut(s) 806
Mva1269I GAATGC 1 cut(s) 862
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 866
NaeI GCCGGC 2 cut(s) 106, 1094
NciI CCSGG 1 cut(s) 806
NdeII GATC 3 cut(s) 127, 616, 901
NgoMIV GCCGGC 2 cut(s) 104, 1092
NlaIII CATG 5 cut(s) 527, 541, 553, 599, 679
NlaIV GGNNCC 4 cut(s) 29, 547, 1023, 1153
NmeAIII GCCGAG 2 cut(s) 85, 134
NmuCI GTSAC 1 cut(s) 363
NspI RCATGY 2 cut(s) 599, 679
NspV TTCGAA 1 cut(s) 1069
PciI ACATGT 1 cut(s) 675
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PctI GAATGC 1 cut(s) 862
PdiI GCCGGC 2 cut(s) 106, 1094
PdmI GAANNNNTTC 1 cut(s) 1075
PfeI GAWTC 2 cut(s) 1066, 1124
PkrI GCNGC 5 cut(s) 327, 590, 868, 1030, 1147
PleI GAGTC 4 cut(s) 130, 140, 241, 1117
PmaCI CACGTG 1 cut(s) 887
PmlI CACGTG 1 cut(s) 887
PpsI GAGTC 4 cut(s) 130, 140, 241, 1117
Ppu21I YACGTR 1 cut(s) 887
PscI ACATGT 1 cut(s) 675
PspCI CACGTG 1 cut(s) 887
PspN4I GGNNCC 4 cut(s) 29, 547, 1023, 1153
PspPI GGNCC 3 cut(s) 27, 171, 545
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
Rsr2I CGGWCCG 1 cut(s) 171
RsrII CGGWCCG 1 cut(s) 171
SaqAI TTAA 7 cut(s) 221, 360, 414, 423, 431, 474, 941
SatI GCNGC 5 cut(s) 326, 589, 867, 1029, 1146
Sau3AI GATC 3 cut(s) 127, 616, 901
Sau96I GGNCC 3 cut(s) 27, 171, 545
SchI GAGTC 4 cut(s) 131, 140, 242, 1118
ScrFI CCNGG 1 cut(s) 806
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 7 cut(s) 304, 448, 814, 890, 966, 1019, 1132
SfuI TTCGAA 1 cut(s) 1069
SinI GGWCC 3 cut(s) 27, 171, 545
SmlI CTYRAG 1 cut(s) 1014
SmoI CTYRAG 1 cut(s) 1014
Sse9I AATT 6 cut(s) 272, 381, 418, 428, 471, 871
SsiI CCGC 2 cut(s) 42, 992
SspMI CTAG 1 cut(s) 852
StyD4I CCNGG 1 cut(s) 804
StyI CCWWGG 2 cut(s) 296, 851
TaaI ACNGT 5 cut(s) 348, 369, 763, 820, 1037
TaiI ACGT 3 cut(s) 51, 356, 889
TaqI TCGA 2 cut(s) 619, 1069
TaqII GACCGA 1 cut(s) 159
TasI AATT 6 cut(s) 272, 381, 418, 428, 471, 871
TfiI GAWTC 2 cut(s) 1066, 1124
Tru1I TTAA 7 cut(s) 221, 360, 414, 423, 431, 474, 941
Tru9I TTAA 7 cut(s) 221, 360, 414, 423, 431, 474, 941
TscAI CASTG 4 cut(s) 208, 351, 379, 768
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 5 cut(s) 325, 588, 866, 1028, 1145
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 3 cut(s) 429, 566, 959
TspGWI ACGGA 2 cut(s) 40, 139
TspRI CASTG 4 cut(s) 208, 351, 379, 768
VpaK11BI GGWCC 3 cut(s) 27, 171, 545
XceI RCATGY 2 cut(s) 599, 679
XmaJI CCTAGG 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 1075
XspI CTAG 1 cut(s) 852
ZraI GACGTC 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.