Non-structural maintenance of
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 356 |
| Acc36I | ACCTGC | 1 cut(s) | 1015 |
| AccII | CGCG | 1 cut(s) | 84 |
| AciI | CCGC | 2 cut(s) | 42, 992 |
| AclWI | GGATC | 1 cut(s) | 135 |
| AcoI | YGGCCR | 3 cut(s) | 106, 802, 1090 |
| AcvI | CACGTG | 1 cut(s) | 887 |
| AcyI | GRCGYC | 2 cut(s) | 57, 353 |
| AdeI | CACNNNGTG | 1 cut(s) | 348 |
| AfaI | GTAC | 1 cut(s) | 535 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 43, 156 |
| AflIII | ACRYGT | 1 cut(s) | 675 |
| AgsI | TTSAA | 6 cut(s) | 116, 155, 514, 565, 725, 928 |
| AluBI | AGCT | 2 cut(s) | 973, 1183 |
| AluI | AGCT | 2 cut(s) | 973, 1183 |
| Alw26I | GTCTC | 1 cut(s) | 472 |
| AlwI | GGATC | 1 cut(s) | 135 |
| Ama87I | CYCGRG | 1 cut(s) | 133 |
| AoxI | GGCC | 3 cut(s) | 106, 802, 1090 |
| ApeKI | GCWGC | 5 cut(s) | 325, 588, 866, 1028, 1145 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1075 |
| AspA2I | CCTAGG | 1 cut(s) | 851 |
| AspLEI | GCGC | 4 cut(s) | 84, 325, 463, 1179 |
| AspS9I | GGNCC | 3 cut(s) | 27, 171, 545 |
| AsuC2I | CCSGG | 1 cut(s) | 806 |
| AsuHPI | GGTGA | 2 cut(s) | 840, 977 |
| AsuII | TTCGAA | 1 cut(s) | 1069 |
| AvaI | CYCGRG | 1 cut(s) | 133 |
| AvaII | GGWCC | 3 cut(s) | 27, 171, 545 |
| AvrII | CCTAGG | 1 cut(s) | 851 |
| BanII | GRGCYC | 1 cut(s) | 523 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 717, 749 |
| BauI | CACGAG | 1 cut(s) | 278 |
| BbrPI | CACGTG | 1 cut(s) | 887 |
| BbvI | GCAGC | 5 cut(s) | 312, 600, 853, 1040, 1132 |
| BccI | CCATC | 2 cut(s) | 397, 794 |
| BceAI | ACGGC | 3 cut(s) | 59, 170, 173 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BclI | TGATCA | 1 cut(s) | 901 |
| BcnI | CCSGG | 1 cut(s) | 806 |
| BcoDI | GTCTC | 1 cut(s) | 472 |
| BfaI | CTAG | 1 cut(s) | 852 |
| BfoI | RGCGCY | 1 cut(s) | 326 |
| BfuAI | ACCTGC | 1 cut(s) | 1015 |
| BisI | GCNGC | 5 cut(s) | 326, 589, 867, 1029, 1146 |
| BlnI | CCTAGG | 1 cut(s) | 851 |
| BlsI | GCNGC | 5 cut(s) | 327, 590, 868, 1030, 1147 |
| Bme1390I | CCNGG | 1 cut(s) | 806 |
| Bme18I | GGWCC | 3 cut(s) | 27, 171, 545 |
| BmeT110I | CYCGRG | 1 cut(s) | 133 |
| BmgT120I | GGNCC | 3 cut(s) | 27, 171, 545 |
| BmiI | GGNNCC | 4 cut(s) | 29, 547, 1023, 1153 |
| BmrFI | CCNGG | 1 cut(s) | 806 |
| BmsI | GCATC | 7 cut(s) | 304, 448, 814, 890, 966, 1019, 1132 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 131, 163 |
| Bpu14I | TTCGAA | 1 cut(s) | 1069 |
| BpuEI | CTTGAG | 1 cut(s) | 999 |
| BpuMI | CCSGG | 1 cut(s) | 806 |
| BsaAI | YACGTR | 1 cut(s) | 887 |
| BsaHI | GRCGYC | 2 cut(s) | 57, 353 |
| BsaJI | CCNNGG | 2 cut(s) | 296, 851 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 43, 156 |
| Bse118I | RCCGGY | 2 cut(s) | 104, 1092 |
| Bse1I | ACTGG | 2 cut(s) | 372, 938 |
| BseDI | CCNNGG | 2 cut(s) | 296, 851 |
| BseGI | GGATG | 2 cut(s) | 463, 829 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 43, 156 |
| BseMII | CTCAG | 2 cut(s) | 82, 656 |
| BseNI | ACTGG | 2 cut(s) | 372, 938 |
| BseRI | GAGGAG | 1 cut(s) | 983 |
| BseX3I | CGGCCG | 1 cut(s) | 106 |
| BseXI | GCAGC | 5 cut(s) | 312, 600, 853, 1040, 1132 |
| BsgI | GTGCAG | 2 cut(s) | 396, 1121 |
| Bsh1236I | CGCG | 1 cut(s) | 84 |
| Bsh1285I | CGRYCG | 1 cut(s) | 109 |
| BshFI | GGCC | 3 cut(s) | 108, 804, 1092 |
| BsiEI | CGRYCG | 1 cut(s) | 109 |
| BsiHKCI | CYCGRG | 1 cut(s) | 133 |
| BsiSI | CCGG | 3 cut(s) | 105, 805, 1093 |
| BslFI | GGGAC | 1 cut(s) | 59 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 43, 156 |
| BsmAI | GTCTC | 1 cut(s) | 472 |
| BsmFI | GGGAC | 1 cut(s) | 59 |
| BsmI | GAATGC | 1 cut(s) | 862 |
| BsnI | GGCC | 3 cut(s) | 108, 804, 1092 |
| BsoBI | CYCGRG | 1 cut(s) | 133 |
| Bsp119I | TTCGAA | 1 cut(s) | 1069 |
| Bsp1286I | GDGCHC | 1 cut(s) | 523 |
| Bsp143I | GATC | 3 cut(s) | 127, 616, 901 |
| BspACI | CCGC | 2 cut(s) | 42, 992 |
| BspANI | GGCC | 3 cut(s) | 108, 804, 1092 |
| BspCNI | CTCAG | 2 cut(s) | 81, 655 |
| BspFNI | CGCG | 1 cut(s) | 84 |
| BspLI | GGNNCC | 4 cut(s) | 29, 547, 1023, 1153 |
| BspMI | ACCTGC | 1 cut(s) | 1015 |
| BspPI | GGATC | 1 cut(s) | 135 |
| BspT104I | TTCGAA | 1 cut(s) | 1069 |
| BsrFI | RCCGGY | 2 cut(s) | 104, 1092 |
| BsrI | ACTGG | 2 cut(s) | 372, 938 |
| BssAI | RCCGGY | 2 cut(s) | 104, 1092 |
| BssECI | CCNNGG | 2 cut(s) | 296, 851 |
| BssMI | GATC | 3 cut(s) | 127, 616, 901 |
| BssNI | GRCGYC | 2 cut(s) | 57, 353 |
| BssSI | CACGAG | 1 cut(s) | 278 |
| BssT1I | CCWWGG | 2 cut(s) | 296, 851 |
| Bst2BI | CACGAG | 1 cut(s) | 278 |
| Bst4CI | ACNGT | 5 cut(s) | 348, 369, 763, 820, 1037 |
| Bst6I | CTCTTC | 1 cut(s) | 1101 |
| BstACI | GRCGYC | 2 cut(s) | 57, 353 |
| BstBAI | YACGTR | 1 cut(s) | 887 |
| BstBI | TTCGAA | 1 cut(s) | 1069 |
| BstC8I | GCNNGC | 5 cut(s) | 106, 448, 992, 1094, 1181 |
| BstDEI | CTNAG | 4 cut(s) | 68, 642, 698, 790 |
| BstF5I | GGATG | 2 cut(s) | 463, 829 |
| BstFNI | CGCG | 1 cut(s) | 84 |
| BstH2I | RGCGCY | 1 cut(s) | 326 |
| BstHHI | GCGC | 4 cut(s) | 84, 325, 463, 1179 |
| BstKTI | GATC | 3 cut(s) | 130, 619, 904 |
| BstMAI | GTCTC | 1 cut(s) | 472 |
| BstMBI | GATC | 3 cut(s) | 127, 616, 901 |
| BstMCI | CGRYCG | 1 cut(s) | 109 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 866 |
| BstNSI | RCATGY | 2 cut(s) | 599, 679 |
| BstSCI | CCNGG | 1 cut(s) | 804 |
| BstUI | CGCG | 1 cut(s) | 84 |
| BstV1I | GCAGC | 5 cut(s) | 312, 600, 853, 1040, 1132 |
| BstX2I | RGATCY | 1 cut(s) | 127 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 877 |
| BstYI | RGATCY | 1 cut(s) | 127 |
| BstZI | CGGCCG | 1 cut(s) | 106 |
| BsuRI | GGCC | 3 cut(s) | 108, 804, 1092 |
| BtsCI | GGATG | 2 cut(s) | 463, 829 |
| BtsIMutI | CAGTG | 4 cut(s) | 208, 344, 379, 768 |
| BveI | ACCTGC | 1 cut(s) | 1015 |
| Cac8I | GCNNGC | 5 cut(s) | 106, 448, 992, 1094, 1181 |
| CfoI | GCGC | 4 cut(s) | 84, 325, 463, 1179 |
| Cfr10I | RCCGGY | 2 cut(s) | 104, 1092 |
| Cfr13I | GGNCC | 3 cut(s) | 27, 171, 545 |
| CpoI | CGGWCCG | 1 cut(s) | 171 |
| CseI | GACGC | 1 cut(s) | 65 |
| Csp6I | GTAC | 1 cut(s) | 534 |
| CspI | CGGWCCG | 1 cut(s) | 171 |
| CviAII | CATG | 5 cut(s) | 524, 538, 550, 596, 676 |
| CviQI | GTAC | 1 cut(s) | 534 |
| DdeI | CTNAG | 4 cut(s) | 68, 642, 698, 790 |
| DpnI | GATC | 3 cut(s) | 129, 618, 903 |
| DpnII | GATC | 3 cut(s) | 127, 616, 901 |
| DraIII | CACNNNGTG | 1 cut(s) | 348 |
| EaeI | YGGCCR | 3 cut(s) | 106, 802, 1090 |
| EagI | CGGCCG | 1 cut(s) | 106 |
| Eam1104I | CTCTTC | 1 cut(s) | 1101 |
| EarI | CTCTTC | 1 cut(s) | 1101 |
| EclXI | CGGCCG | 1 cut(s) | 106 |
| Eco130I | CCWWGG | 2 cut(s) | 296, 851 |
| Eco24I | GRGCYC | 1 cut(s) | 523 |
| Eco47I | GGWCC | 3 cut(s) | 27, 171, 545 |
| Eco52I | CGGCCG | 1 cut(s) | 106 |
| Eco72I | CACGTG | 1 cut(s) | 887 |
| Eco88I | CYCGRG | 1 cut(s) | 133 |
| EcoT14I | CCWWGG | 2 cut(s) | 296, 851 |
| EcoT38I | GRGCYC | 1 cut(s) | 523 |
| ErhI | CCWWGG | 2 cut(s) | 296, 851 |
| FaeI | CATG | 5 cut(s) | 527, 541, 553, 599, 679 |
| FaiI | YATR | 9 cut(s) | 525, 539, 551, 597, 677, 900, 953, 984, 1033 |
| FaqI | GGGAC | 1 cut(s) | 59 |
| FatI | CATG | 5 cut(s) | 523, 537, 549, 595, 675 |
| FauI | CCCGC | 2 cut(s) | 35, 999 |
| FbaI | TGATCA | 1 cut(s) | 901 |
| Fnu4HI | GCNGC | 5 cut(s) | 326, 589, 867, 1029, 1146 |
| FokI | GGATG | 2 cut(s) | 470, 836 |
| FriOI | GRGCYC | 1 cut(s) | 523 |
| Fsp4HI | GCNGC | 5 cut(s) | 326, 589, 867, 1029, 1146 |
| FspBI | CTAG | 1 cut(s) | 852 |
| GlaI | GCGC | 4 cut(s) | 83, 324, 462, 1178 |
| GluI | GCNGC | 5 cut(s) | 326, 589, 867, 1029, 1146 |
| HaeII | RGCGCY | 1 cut(s) | 326 |
| HaeIII | GGCC | 3 cut(s) | 108, 804, 1092 |
| HapII | CCGG | 3 cut(s) | 105, 805, 1093 |
| HgaI | GACGC | 1 cut(s) | 65 |
| HhaI | GCGC | 4 cut(s) | 84, 325, 463, 1179 |
| Hin1I | GRCGYC | 2 cut(s) | 57, 353 |
| Hin1II | CATG | 5 cut(s) | 527, 541, 553, 599, 679 |
| Hin6I | GCGC | 4 cut(s) | 82, 323, 461, 1177 |
| HinP1I | GCGC | 4 cut(s) | 82, 323, 461, 1177 |
| HincII | GTYRAC | 3 cut(s) | 52, 94, 681 |
| HindII | GTYRAC | 3 cut(s) | 52, 94, 681 |
| HindIII | AAGCTT | 1 cut(s) | 1181 |
| HinfI | GANTC | 6 cut(s) | 122, 146, 233, 1066, 1109, 1124 |
| HpaII | CCGG | 3 cut(s) | 105, 805, 1093 |
| HphI | GGTGA | 2 cut(s) | 840, 977 |
| Hpy166II | GTNNAC | 4 cut(s) | 52, 94, 351, 681 |
| Hpy188I | TCNGA | 7 cut(s) | 71, 127, 175, 238, 291, 394, 917 |
| Hpy188III | TCNNGA | 7 cut(s) | 133, 190, 230, 514, 1016, 1080, 1130 |
| Hpy8I | GTNNAC | 4 cut(s) | 52, 94, 351, 681 |
| Hpy99I | CGWCG | 1 cut(s) | 59 |
| HpyAV | CCTTC | 6 cut(s) | 176, 475, 568, 696, 719, 940 |
| HpyCH4III | ACNGT | 5 cut(s) | 348, 369, 763, 820, 1037 |
| HpyCH4IV | ACGT | 3 cut(s) | 48, 353, 886 |
| HpyCH4V | TGCA | 9 cut(s) | 277, 317, 377, 503, 599, 755, 827, 1010, 1102 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 866 |
| HpyF3I | CTNAG | 4 cut(s) | 68, 642, 698, 790 |
| HpySE526I | ACGT | 3 cut(s) | 48, 353, 886 |
| Hsp92I | GRCGYC | 2 cut(s) | 57, 353 |
| Hsp92II | CATG | 5 cut(s) | 527, 541, 553, 599, 679 |
| HspAI | GCGC | 4 cut(s) | 82, 323, 461, 1177 |
| KroI | GCCGGC | 2 cut(s) | 104, 1092 |
| KroNI | GCCGGC | 2 cut(s) | 106, 1094 |
| Ksp22I | TGATCA | 1 cut(s) | 901 |
| Kzo9I | GATC | 3 cut(s) | 127, 616, 901 |
| LmnI | GCTCC | 2 cut(s) | 865, 970 |
| Lsp1109I | GCAGC | 5 cut(s) | 312, 600, 853, 1040, 1132 |
| LweI | GCATC | 7 cut(s) | 304, 448, 814, 890, 966, 1019, 1132 |
| MaeI | CTAG | 1 cut(s) | 852 |
| MaeII | ACGT | 3 cut(s) | 48, 353, 886 |
| MaeIII | GTNAC | 2 cut(s) | 363, 400 |
| MalI | GATC | 3 cut(s) | 129, 618, 903 |
| MboI | GATC | 3 cut(s) | 127, 616, 901 |
| MboII | GAAGA | 3 cut(s) | 662, 1118, 1133 |
| MflI | RGATCY | 1 cut(s) | 127 |
| MhlI | GDGCHC | 1 cut(s) | 523 |
| MluCI | AATT | 6 cut(s) | 272, 381, 418, 428, 471, 871 |
| MlyI | GAGTC | 4 cut(s) | 131, 140, 242, 1118 |
| MmeI | TCCRAC | 3 cut(s) | 105, 198, 216 |
| MnlI | CCTC | 9 cut(s) | 81, 206, 234, 313, 448, 510, 883, 961, 1012 |
| MroNI | GCCGGC | 2 cut(s) | 104, 1092 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1075 |
| MseI | TTAA | 7 cut(s) | 221, 360, 414, 423, 431, 474, 941 |
| MspI | CCGG | 3 cut(s) | 105, 805, 1093 |
| MspR9I | CCNGG | 1 cut(s) | 806 |
| Mva1269I | GAATGC | 1 cut(s) | 862 |
| MvnI | CGCG | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 866 |
| NaeI | GCCGGC | 2 cut(s) | 106, 1094 |
| NciI | CCSGG | 1 cut(s) | 806 |
| NdeII | GATC | 3 cut(s) | 127, 616, 901 |
| NgoMIV | GCCGGC | 2 cut(s) | 104, 1092 |
| NlaIII | CATG | 5 cut(s) | 527, 541, 553, 599, 679 |
| NlaIV | GGNNCC | 4 cut(s) | 29, 547, 1023, 1153 |
| NmeAIII | GCCGAG | 2 cut(s) | 85, 134 |
| NmuCI | GTSAC | 1 cut(s) | 363 |
| NspI | RCATGY | 2 cut(s) | 599, 679 |
| NspV | TTCGAA | 1 cut(s) | 1069 |
| PciI | ACATGT | 1 cut(s) | 675 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 131 |
| PctI | GAATGC | 1 cut(s) | 862 |
| PdiI | GCCGGC | 2 cut(s) | 106, 1094 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1075 |
| PfeI | GAWTC | 2 cut(s) | 1066, 1124 |
| PkrI | GCNGC | 5 cut(s) | 327, 590, 868, 1030, 1147 |
| PleI | GAGTC | 4 cut(s) | 130, 140, 241, 1117 |
| PmaCI | CACGTG | 1 cut(s) | 887 |
| PmlI | CACGTG | 1 cut(s) | 887 |
| PpsI | GAGTC | 4 cut(s) | 130, 140, 241, 1117 |
| Ppu21I | YACGTR | 1 cut(s) | 887 |
| PscI | ACATGT | 1 cut(s) | 675 |
| PspCI | CACGTG | 1 cut(s) | 887 |
| PspN4I | GGNNCC | 4 cut(s) | 29, 547, 1023, 1153 |
| PspPI | GGNCC | 3 cut(s) | 27, 171, 545 |
| PsuI | RGATCY | 1 cut(s) | 127 |
| RsaI | GTAC | 1 cut(s) | 535 |
| RsaNI | GTAC | 1 cut(s) | 534 |
| Rsr2I | CGGWCCG | 1 cut(s) | 171 |
| RsrII | CGGWCCG | 1 cut(s) | 171 |
| SaqAI | TTAA | 7 cut(s) | 221, 360, 414, 423, 431, 474, 941 |
| SatI | GCNGC | 5 cut(s) | 326, 589, 867, 1029, 1146 |
| Sau3AI | GATC | 3 cut(s) | 127, 616, 901 |
| Sau96I | GGNCC | 3 cut(s) | 27, 171, 545 |
| SchI | GAGTC | 4 cut(s) | 131, 140, 242, 1118 |
| ScrFI | CCNGG | 1 cut(s) | 806 |
| SduI | GDGCHC | 1 cut(s) | 523 |
| SfaNI | GCATC | 7 cut(s) | 304, 448, 814, 890, 966, 1019, 1132 |
| SfuI | TTCGAA | 1 cut(s) | 1069 |
| SinI | GGWCC | 3 cut(s) | 27, 171, 545 |
| SmlI | CTYRAG | 1 cut(s) | 1014 |
| SmoI | CTYRAG | 1 cut(s) | 1014 |
| Sse9I | AATT | 6 cut(s) | 272, 381, 418, 428, 471, 871 |
| SsiI | CCGC | 2 cut(s) | 42, 992 |
| SspMI | CTAG | 1 cut(s) | 852 |
| StyD4I | CCNGG | 1 cut(s) | 804 |
| StyI | CCWWGG | 2 cut(s) | 296, 851 |
| TaaI | ACNGT | 5 cut(s) | 348, 369, 763, 820, 1037 |
| TaiI | ACGT | 3 cut(s) | 51, 356, 889 |
| TaqI | TCGA | 2 cut(s) | 619, 1069 |
| TaqII | GACCGA | 1 cut(s) | 159 |
| TasI | AATT | 6 cut(s) | 272, 381, 418, 428, 471, 871 |
| TfiI | GAWTC | 2 cut(s) | 1066, 1124 |
| Tru1I | TTAA | 7 cut(s) | 221, 360, 414, 423, 431, 474, 941 |
| Tru9I | TTAA | 7 cut(s) | 221, 360, 414, 423, 431, 474, 941 |
| TscAI | CASTG | 4 cut(s) | 208, 351, 379, 768 |
| TseFI | GTSAC | 1 cut(s) | 363 |
| TseI | GCWGC | 5 cut(s) | 325, 588, 866, 1028, 1145 |
| Tsp45I | GTSAC | 1 cut(s) | 363 |
| TspDTI | ATGAA | 3 cut(s) | 429, 566, 959 |
| TspGWI | ACGGA | 2 cut(s) | 40, 139 |
| TspRI | CASTG | 4 cut(s) | 208, 351, 379, 768 |
| VpaK11BI | GGWCC | 3 cut(s) | 27, 171, 545 |
| XceI | RCATGY | 2 cut(s) | 599, 679 |
| XmaJI | CCTAGG | 1 cut(s) | 851 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1075 |
| XspI | CTAG | 1 cut(s) | 852 |
| ZraI | GACGTC | 1 cut(s) | 354 |