Rmu_co8034794.1_g000001

Non-structural maintenance of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8034794.1
OG0000940
Physical Location & Seq
Reverse (-)
252 .. 497
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8034794.1_g000001.1.cds

Sequence Viewer

Length: 246 bp
atgaaggatatggtgcctgatggtgaggagctaatgccacatagaatccctgccaactctgaacctgcctctcaggaggaaccagctgcatacgtgtcccaaacaggacacacaactccaattcgaaagctttccaggaatcgcggcaggatggtgcaggaagaagctattgtagaagaatcccctgaatatgataatgaccgtgctgctggaggcgcactttgcaggtctaagcgcaagctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nse4_C

Protein Analysis

81

Amino Acids

9.04

Weight (kDa)

5.66

Isoelectric Point (pI)

74.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 73, 216
AccB1I GGYRCC 1 cut(s) 13
AccII CGCG 1 cut(s) 144
AciI CCGC 1 cut(s) 144
AflIII ACRYGT 1 cut(s) 93
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 5 cut(s) 31, 86, 130, 167, 241
AluI AGCT 5 cut(s) 31, 86, 130, 167, 241
ApeKI GCWGC 2 cut(s) 86, 206
Asp700I GAANNNNTTC 1 cut(s) 130
AspLEI GCGC 2 cut(s) 218, 237
AsuHPI GGTGA 1 cut(s) 35
AsuII TTCGAA 1 cut(s) 124
BanI GGYRCC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 73, 193
BccI CCATC 2 cut(s) 14, 145
BciT130I CCWGG 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 242
BfuAI ACCTGC 2 cut(s) 73, 216
BisI GCNGC 3 cut(s) 87, 145, 207
BlsI GCNGC 3 cut(s) 88, 146, 208
Bme1390I CCNGG 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 15, 81
BmrFI CCNGG 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 124
BsaAI YACGTR 1 cut(s) 94
BseBI CCWGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 73, 193
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 13
BslFI GGGAC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 124
BspACI CCGC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 85
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 15, 81
BspMI ACCTGC 2 cut(s) 73, 216
BspT104I TTCGAA 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 94
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 72, 231
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 2 cut(s) 218, 237
BstMWI GCNNNNNNNGC 2 cut(s) 215, 222
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 242
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 73, 193
BtsCI GGATG 1 cut(s) 156
BveI ACCTGC 2 cut(s) 73, 216
Cac8I GCNNGC 1 cut(s) 239
CfoI GCGC 2 cut(s) 218, 237
CviJI RGCY 5 cut(s) 31, 86, 130, 167, 241
CviKI_1 RGCY 5 cut(s) 31, 86, 130, 167, 241
DdeI CTNAG 2 cut(s) 72, 231
EcoRII CCWGG 1 cut(s) 134
FaiI YATR 5 cut(s) 11, 42, 91, 192, 244
FaqI GGGAC 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 87, 145, 207
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 3 cut(s) 87, 145, 207
GlaI GCGC 2 cut(s) 217, 236
GluI GCNGC 3 cut(s) 87, 145, 207
GsuI CTGGAG 1 cut(s) 231
HhaI GCGC 2 cut(s) 218, 237
Hin6I GCGC 2 cut(s) 216, 235
HinP1I GCGC 2 cut(s) 216, 235
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 45, 139, 179
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 89, 157, 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 222
HpyF3I CTNAG 2 cut(s) 72, 231
HpySE526I ACGT 1 cut(s) 93
HspAI GCGC 2 cut(s) 216, 235
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 73, 193
MaeII ACGT 1 cut(s) 93
MboII GAAGA 2 cut(s) 173, 188
MluCI AATT 1 cut(s) 120
MnlI CCTC 4 cut(s) 19, 70, 79, 206
MroXI GAANNNNTTC 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 215, 222
NlaIV GGNNCC 2 cut(s) 15, 81
NspV TTCGAA 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 3 cut(s) 45, 139, 179
PfoI TCCNGGA 1 cut(s) 134
PkrI GCNGC 3 cut(s) 88, 146, 208
Ppu21I YACGTR 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 15, 81
PvuII CAGCTG 1 cut(s) 86
SatI GCNGC 3 cut(s) 87, 145, 207
ScrFI CCNGG 1 cut(s) 136
SetI ASST 8 cut(s) 33, 67, 88, 96, 132, 169, 230, 243
SfcI CTRYAG 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 124
Sse9I AATT 1 cut(s) 120
SsiI CCGC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 120
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 3 cut(s) 45, 139, 179
TseI GCWGC 2 cut(s) 86, 206
TspDTI ATGAA 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.