Rw0G023210

Non-structural maintenance of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01079
OG0000940
Physical Location & Seq
Reverse (-)
45082 .. 45699
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023210.1

Sequence Viewer

Length: 372 bp
ATGAATATTCAGATTAAGCAAAGGAAGGCTGCTGTCCAGCTTACAAAGCCTACCACAACTCATCTGCCCAAGGAGATCAATAATGAAGGAGGCAAAAGAACTGATACAGATTTGAACATGGCAACAACGTCTGAGATTTTAAAGAACAATGAAAGGGTGGAACTCAGTTGTTTGATACTAAATAGAAGATCTTTTGCACAGACAGTGGAGAATCTATTTGCTCTGTCATTTCTGGCAAAAGACGGCAGAGTTAGAATTGCTGTCGAAGCAAATGGTTCTCATATTGTTTCTCCTACGAATGGTCCTGTTGGCAATGAAGTGGCTTATCACCATTTTGTGTTCCGATTTGATTTCAAGGACTGGAAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nse4_C

Protein Analysis

123

Amino Acids

13.91

Weight (kDa)

9.46

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nse4_C PF08743 53 - 122 2.4e-18 Nse4 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 2 cut(s) 115, 355
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 259
BglII AGATCT 1 cut(s) 188
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 2 cut(s) 123, 178
BseNI ACTGG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 299
Bsp143I GATC 2 cut(s) 75, 188
BspCNI CTCAG 2 cut(s) 124, 177
BsrDI GCAATG 1 cut(s) 319
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 75, 188
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 132, 164
BstKTI GATC 2 cut(s) 78, 191
BstMBI GATC 2 cut(s) 75, 188
BstMWI GCNNNNNNNGC 2 cut(s) 46, 266
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 302
CviAII CATG 1 cut(s) 118
CviJI RGCY 4 cut(s) 29, 40, 49, 323
CviKI_1 RGCY 4 cut(s) 29, 40, 49, 323
DdeI CTNAG 2 cut(s) 132, 164
DpnI GATC 2 cut(s) 77, 190
DpnII GATC 2 cut(s) 75, 188
DraI TTTAAA 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 121
FaiI YATR 2 cut(s) 119, 282
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 121
HinfI GANTC 1 cut(s) 211
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 3 cut(s) 12, 133, 344
HpyAV CCTTC 3 cut(s) 19, 80, 358
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 266
HpyF3I CTNAG 2 cut(s) 132, 164
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 2 cut(s) 75, 188
LpnPI CCDG 4 cut(s) 50, 218, 318, 346
Lsp1109I GCAGC 1 cut(s) 16
MaeII ACGT 1 cut(s) 128
MalI GATC 2 cut(s) 77, 190
MboI GATC 2 cut(s) 75, 188
MboII GAAGA 1 cut(s) 198
MflI RGATCY 1 cut(s) 188
MluCI AATT 1 cut(s) 255
MnlI CCTC 1 cut(s) 83
MseI TTAA 2 cut(s) 15, 140
MwoI GCNNNNNNNGC 2 cut(s) 46, 266
NdeII GATC 2 cut(s) 75, 188
NlaIII CATG 1 cut(s) 121
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 302
PsuI RGATCY 1 cut(s) 188
SaqAI TTAA 2 cut(s) 15, 140
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 75, 188
Sau96I GGNCC 1 cut(s) 302
SetI ASST 3 cut(s) 42, 131, 369
SgeI CNNG 6 cut(s) 49, 82, 130, 245, 317, 367
SinI GGWCC 1 cut(s) 302
Sse9I AATT 1 cut(s) 255
SspI AATATT 1 cut(s) 7
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 255
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 15, 140
Tru9I TTAA 2 cut(s) 15, 140
TscAI CASTG 1 cut(s) 210
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 4 cut(s) 17, 99, 165, 330
TspRI CASTG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.