Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Forward (+)

32828524 .. 32829756

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG311800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCTTTGGTGCGGGGAGCATACCCGTCAACTGGATGGTGCGCATTATGAGTTCCTAAGGGGAATCTCCAACCTCGTTGGAGTCAAGGATGCCAAAAATTATGGGCGCGAAGTGAATGACAAAGTTGATTTCAACTGGAAGAAACTTTTGCAGAAAAAGGCTATGCCTCTTTCTTTTTATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

61

Amino Acids

7.22

Weight (kDa)

9.17

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	1 - 33	3.2e-09	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	42
AccII	CGCG	1 cut(s)	108
AciI	CCGC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	133
AspLEI	GCGC	2 cut(s)	43, 108
AxyI	CCTNAGG	1 cut(s)	56
BccI	CCATC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	36, 140
Bse21I	CCTNAGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	40, 94
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseNI	ACTGG	2 cut(s)	36, 140
Bsh1236I	CGCG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	31
BspACI	CCGC	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	36, 140
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	40, 94
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	43, 108
BstUI	CGCG	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	40, 94
CfoI	GCGC	2 cut(s)	43, 108
CviJI	RGCY	1 cut(s)	161
CviKI_1	RGCY	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	56
FaiI	YATR	4 cut(s)	21, 48, 102, 164
FauI	CCCGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	47, 101
FspAI	RTGCGCAY	1 cut(s)	42
FspBI	CTAG	1 cut(s)	184
FspI	TGCGCA	1 cut(s)	42
GlaI	GCGC	2 cut(s)	42, 107
HhaI	GCGC	2 cut(s)	43, 108
Hin6I	GCGC	2 cut(s)	41, 106
HinP1I	GCGC	2 cut(s)	41, 106
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	2 cut(s)	63, 81
Hpy166II	GTNNAC	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	56
HspAI	GCGC	2 cut(s)	41, 106
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	2 cut(s)	17, 121
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	184
MboII	GAAGA	1 cut(s)	151
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	2 cut(s)	58, 93
MnlI	CCTC	2 cut(s)	83, 177
MvnI	CGCG	1 cut(s)	108
NsbI	TGCGCA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	63
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	90
SetI	ASST	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	79
SgeI	CNNG	7 cut(s)	25, 36, 44, 86, 97, 119, 148
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	184
TasI	AATT	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.