Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Forward (+)

85916891 .. 85918708

Gene Structure 1818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036861

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTGAGAAAGAAGGTACTGTCAATATTGAGCGACTCGACTTCGGCCAAGACCCGGAGCCCCGCCGAAAGCTCCGCTCCGGCTACCTCGCCGTCCGGAAGCTGACCAGTGAGAAAAGAGATGATATAGTGAGTCCGGACTCAAAGAAATTTGATGTTGTTATTGACGAAATTAACAGACTTCATGAGCAAGTACAGCTTCCCCGAGAACAAGTGTCAGATGCTCAGGCACTTCTAGACGTAACCAAAACCGTGGTGGCCCCTATTATGTCACATTCTAATGGGGAAACTACCAGAAGCGATTTCATTACCAGTTTGATTAAAAATTTCGGGCAAGTCAATAGGTCATCAGTGAACGAAGATGATGCCCATGTCTCACTCAACTGGAAAGATATTGGACTTTCTGTTCCACCAACACTCAAGAGGGCTTTTGGATGTTGCACAATGCTTGGACCCATGAATACTGAGTATAAGGAAAGGAAGGATGCTGTCCGGCGTACAAAGCCTACCACAGCTCATCTGCCGACAGAGATTAATGAAGGAGGGGAAACAAATGAGACAGACTTAAACATGTTAACAATGTATGAGATTTTAAAGAAGGAGAAGAATGTCGAACTCAGTTGTTTGATACTGAATAGAAGGTCTTTTGCACAGACCGTGGAGAATCTATTCGCTCTTTCATTCCTCGCAAAAGACGGCAGAGTTAGAATTGCCGTCGAAGCAAATGGTTCTCATGTCGTTTCACCTACGAATGGTCCTGTTGCCAATGCAGTGGCTTATCACCATTTTGTGTTCCGATTTGATTTCAAGGACTGGAAGATAATGACTGAAATGGTGGCTGTTGGTGAGGAGCTGATGCCTCATAGAGACCACACAAAGTGCACACCTGCCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nse4_C

Protein Analysis

299

Amino Acids

33.61

Weight (kDa)

6.33

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nse4_C	PF08743	204 - 286	4.5e-20	Nse4 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	78
AccIII	TCCGGA	2 cut(s)	96, 136
AciI	CCGC	2 cut(s)	64, 76
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	149, 325
AdeI	CACNNNGTG	1 cut(s)	879
AfaI	GTAC	3 cut(s)	19, 195, 499
AfiI	CCNNNNNNNGG	2 cut(s)	55, 752
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	1 cut(s)	808
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	5 cut(s)	73, 103, 199, 515, 853
AluI	AGCT	5 cut(s)	73, 103, 199, 515, 853
Alw21I	GWGCWC	1 cut(s)	884
Alw26I	GTCTC	3 cut(s)	379, 551, 861
Alw44I	GTGCAC	1 cut(s)	880
Ama87I	CYCGRG	1 cut(s)	204
Aor13HI	TCCGGA	2 cut(s)	96, 136
AoxI	GGCC	2 cut(s)	46, 258
ApaLI	GTGCAC	1 cut(s)	880
ApoI	RAATTY	2 cut(s)	149, 325
AseI	ATTAAT	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	668
AspS9I	GGNCC	3 cut(s)	259, 452, 755
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	735, 773, 857
AvaI	CYCGRG	1 cut(s)	204
AvaII	GGWCC	2 cut(s)	452, 755
BaeGI	GKGCMC	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	884
BceAI	ACGGC	3 cut(s)	77, 698, 712
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	3 cut(s)	379, 551, 861
BfaI	CTAG	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	2 cut(s)	452, 755
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	3 cut(s)	259, 452, 755
BmiI	GGNNCC	3 cut(s)	60, 261, 454
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	4 cut(s)	211, 355, 475, 846
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	861
BsaJI	CCNNGG	2 cut(s)	252, 657
BsaWI	WCCGGW	2 cut(s)	96, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 752
Bse1I	ACTGG	4 cut(s)	108, 312, 389, 818
BseAI	TCCGGA	2 cut(s)	96, 136
BseDI	CCNNGG	2 cut(s)	252, 657
BseGI	GGATG	2 cut(s)	440, 490
BseLI	CCNNNNNNNGG	2 cut(s)	55, 752
BseMII	CTCAG	3 cut(s)	239, 456, 631
BseNI	ACTGG	4 cut(s)	108, 312, 389, 818
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	1 cut(s)	884
BshFI	GGCC	2 cut(s)	48, 260
BsiHKAI	GWGCWC	1 cut(s)	884
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	5 cut(s)	56, 81, 97, 137, 493
BslI	CCNNNNNNNGG	2 cut(s)	55, 752
BsmAI	GTCTC	3 cut(s)	379, 551, 861
BsnI	GGCC	2 cut(s)	48, 260
Bso31I	GGTCTC	1 cut(s)	861
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	2 cut(s)	63, 884
Bsp13I	TCCGGA	2 cut(s)	96, 136
BspACI	CCGC	2 cut(s)	64, 76
BspANI	GGCC	2 cut(s)	48, 260
BspCNI	CTCAG	3 cut(s)	238, 457, 630
BspEI	TCCGGA	2 cut(s)	96, 136
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	60, 261, 454
BspTNI	GGTCTC	1 cut(s)	861
BsrBI	CCGCTC	1 cut(s)	78
BsrI	ACTGG	4 cut(s)	108, 312, 389, 818
BssECI	CCNNGG	2 cut(s)	252, 657
Bst4CI	ACNGT	3 cut(s)	22, 253, 658
BstDEI	CTNAG	5 cut(s)	6, 225, 465, 617, 894
BstDSI	CCRYGG	2 cut(s)	252, 657
BstF5I	GGATG	2 cut(s)	440, 490
BstMAI	GTCTC	3 cut(s)	379, 551, 861
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 502, 719
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	884
BstXI	CCANNNNNNTGG	2 cut(s)	253, 772
BsuRI	GGCC	2 cut(s)	48, 260
BtgI	CCRYGG	2 cut(s)	252, 657
BtsCI	GGATG	2 cut(s)	440, 490
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	3 cut(s)	115, 357, 777
CciI	TCATGA	1 cut(s)	184
Cfr13I	GGNCC	3 cut(s)	259, 452, 755
Csp6I	GTAC	3 cut(s)	18, 194, 498
CviAII	CATG	5 cut(s)	185, 371, 457, 571, 734
CviQI	GTAC	3 cut(s)	18, 194, 498
DdeI	CTNAG	5 cut(s)	6, 225, 465, 617, 894
DraI	TTTAAA	1 cut(s)	594
DraIII	CACNNNGTG	1 cut(s)	879
EaeI	YGGCCR	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	861
Eco47I	GGWCC	2 cut(s)	452, 755
Eco88I	CYCGRG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	5 cut(s)	188, 374, 460, 574, 737
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	5 cut(s)	184, 370, 456, 570, 733
FauI	CCCGC	1 cut(s)	71
FokI	GGATG	2 cut(s)	447, 497
FriOI	GRGCYC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	48, 260
HapII	CCGG	5 cut(s)	56, 81, 97, 137, 493
Hin1II	CATG	5 cut(s)	188, 374, 460, 574, 737
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	4 cut(s)	36, 133, 140, 664
HpaI	GTTAAC	1 cut(s)	576
HpaII	CCGG	5 cut(s)	56, 81, 97, 137, 493
HphI	GGTGA	3 cut(s)	735, 773, 857
Hpy166II	GTNNAC	3 cut(s)	355, 576, 882
Hpy188I	TCNGA	2 cut(s)	220, 797
Hpy188III	TCNNGA	5 cut(s)	97, 137, 185, 236, 421
Hpy8I	GTNNAC	3 cut(s)	355, 576, 882
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	5 cut(s)	8, 475, 533, 592, 633
HpyCH4III	ACNGT	3 cut(s)	22, 253, 658
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	441, 650, 770, 882
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 502, 719
HpyF3I	CTNAG	5 cut(s)	6, 225, 465, 617, 894
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	188, 374, 460, 574, 737
Kpn2I	TCCGGA	2 cut(s)	96, 136
KspAI	GTTAAC	1 cut(s)	576
LmnI	GCTCC	4 cut(s)	58, 78, 83, 850
LweI	GCATC	4 cut(s)	211, 355, 475, 846
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	241, 270
MbiI	CCGCTC	1 cut(s)	78
MboII	GAAGA	3 cut(s)	371, 616, 829
MhlI	GDGCHC	2 cut(s)	63, 884
MluCI	AATT	4 cut(s)	149, 171, 325, 708
MlyI	GAGTC	3 cut(s)	30, 134, 142
MnlI	CCTC	6 cut(s)	98, 417, 536, 695, 841, 870
MroI	TCCGGA	2 cut(s)	96, 136
MroXI	GAANNNNTTC	1 cut(s)	668
MseI	TTAA	6 cut(s)	174, 321, 534, 566, 575, 593
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	5 cut(s)	56, 81, 97, 137, 493
MspR9I	CCNGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	196, 502, 719
NciI	CCSGG	1 cut(s)	56
NlaIII	CATG	5 cut(s)	188, 374, 460, 574, 737
NlaIV	GGNNCC	3 cut(s)	60, 261, 454
NmuCI	GTSAC	1 cut(s)	270
NspI	RCATGY	1 cut(s)	574
PagI	TCATGA	1 cut(s)	184
PciI	ACATGT	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	668
PfeI	GAWTC	1 cut(s)	664
PleI	GAGTC	3 cut(s)	30, 134, 141
PpsI	GAGTC	3 cut(s)	30, 134, 141
PscI	ACATGT	1 cut(s)	570
PshBI	ATTAAT	1 cut(s)	534
PspN4I	GGNNCC	3 cut(s)	60, 261, 454
PspPI	GGNCC	3 cut(s)	259, 452, 755
RsaI	GTAC	3 cut(s)	19, 195, 499
RsaNI	GTAC	3 cut(s)	18, 194, 498
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	6 cut(s)	174, 321, 534, 566, 575, 593
Sau96I	GGNCC	3 cut(s)	259, 452, 755
SchI	GAGTC	3 cut(s)	30, 134, 142
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	63, 884
SfaNI	GCATC	4 cut(s)	211, 355, 475, 846
SinI	GGWCC	2 cut(s)	452, 755
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	149, 171, 325, 708
SsiI	CCGC	2 cut(s)	64, 76
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	3 cut(s)	22, 253, 658
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	39, 612, 717
TasI	AATT	4 cut(s)	149, 171, 325, 708
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	6 cut(s)	174, 321, 534, 566, 575, 593
Tru9I	TTAA	6 cut(s)	174, 321, 534, 566, 575, 593
TscAI	CASTG	3 cut(s)	115, 357, 777
TseFI	GTSAC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	5 cut(s)	173, 295, 473, 552, 669
TspRI	CASTG	3 cut(s)	115, 357, 777
VneI	GTGCAC	1 cut(s)	880
VpaK11BI	GGWCC	2 cut(s)	452, 755
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	2 cut(s)	149, 325
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	668
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.