Rmu_co8187596.1_g000001

Non-structural maintenance of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8187596.1
OG0000940
Physical Location & Seq
Reverse (-)
1 .. 573
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8187596.1_g000001.1.cds

Sequence Viewer

Length: 195 bp
atgttctttgcacagacagtcgagaatttatttgctctttcattccttgttaaagatggccgggctgaaatcatagttgatgcaaatcgcgttcattttgttgcaccaaggaatgctgccaaggccactgaagtggcatctcgtgaggttgtttatagacactttgtgttccgatttgatttcaaggactggaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nse4_C

Protein Analysis

65

Amino Acids

7.62

Weight (kDa)

9.39

Isoelectric Point (pI)

12.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 166
AgsI TTSAA 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 131
AoxI GGCC 2 cut(s) 58, 123
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 62
BauI CACGAG 1 cut(s) 141
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 50
BcnI CCSGG 1 cut(s) 62
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 2 cut(s) 70, 146
BpuMI CCSGG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 107, 120
Bse1I ACTGG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 107, 120
BseJI GATNNNNATC 1 cut(s) 84
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 60, 125
BsiSI CCGG 1 cut(s) 61
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 2 cut(s) 60, 125
BspANI GGCC 2 cut(s) 60, 125
BspFNI CGCG 1 cut(s) 90
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 107, 120
BssSI CACGAG 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 107, 120
Bst2BI CACGAG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 19
BstFNI CGCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 2 cut(s) 60, 125
BtsIMutI CAGTG 1 cut(s) 126
CviJI RGCY 3 cut(s) 60, 65, 125
CviKI_1 RGCY 3 cut(s) 60, 65, 125
DraIII CACNNNGTG 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 58
Eco130I CCWWGG 2 cut(s) 107, 120
Eco57I CTGAAG 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 107, 120
ErhI CCWWGG 2 cut(s) 107, 120
FaiI YATR 2 cut(s) 74, 156
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 60, 125
HapII CCGG 1 cut(s) 61
HpaII CCGG 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 22, 143
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 11, 83, 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
LpnPI CCDG 2 cut(s) 74, 175
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 70, 146
MluCI AATT 1 cut(s) 25
MnlI CCTC 1 cut(s) 139
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 118
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 62
OliI CACNNNNGTG 1 cut(s) 131
PctI GAATGC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 62
SetI ASST 1 cut(s) 150
SfaNI GCATC 2 cut(s) 70, 146
SgeI CNNG 9 cut(s) 34, 59, 73, 74, 101, 120, 133, 153, 155
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 2 cut(s) 107, 120
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 25
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 133
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 30, 83
TspRI CASTG 1 cut(s) 133
XapI RAATTY 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.