Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Forward (+)

86714403 .. 86716045

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG544500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGTTGATCTACATCAATGGTTCTTCTGTTCATCAGTTCTGTGATCAATCTGCTCCGAGAATCTCTATAATTCCTACGGCTGAGAAAGAGTGTACTGTCAATTTTGAGCTACTCAACTTCGGCCAAGACCCGGTGCCACGGCGAGAGCTCCGCTCCGACAACCTCCCCGTCCGGAGCTTCACCAGTGAGAAAAGAGACGATTTAATGAGTCCGGATTCGATGAAGTTTGATGTGATCATTGATATAGTTGACAAACTGCATGAGCAAGTTCAGCTTCCGAGAGAACAAGTAGCGGATGCACAAGCACTTGTCCAAGTAACACCGTGGTGGCCTCTGCTTGGACCCATGAATATTCAGATTAAGCAAGGGAAGGCTGCTGTCCGGCGTACAAAGCCTACCACAACTCATCTGCCCAAGGAGATCAATAATGAAGGAGGCAAAAGAACTGATACAGATTTGAACATGGCAACAATGTCCGAGATTTTAAAGAACAATAAAAGGGTGGAACTCAGTTGTTTGATACTAAATAGAAGATCTTTTGCACAGACAGTGGAGAATCTATTTGCTCTGTCATTTCTGGCAAAAGACGGCAGAGTTAGAATTGCTGTCGAAGCAAATGGTTCTCATATTGTTTCTCCTACGAATGGTCCTGTTGCCAATGAAGTGGCTTATCACCATTTTGTGTTCCGATTTGATTTCAAGGGCTGGAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nse4_C

Protein Analysis

239

Amino Acids

27.11

Weight (kDa)

7.76

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nse4_C	PF08743	169 - 238	2.9e-17	Nse4 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AccBSI	CCGCTC	1 cut(s)	156
AccIII	TCCGGA	2 cut(s)	174, 214
AciI	CCGC	2 cut(s)	154, 296
AcoI	YGGCCR	1 cut(s)	124
AfaI	GTAC	2 cut(s)	97, 391
AfiI	CCNNNNNNNGG	3 cut(s)	133, 341, 647
AgsI	TTSAA	2 cut(s)	463, 703
AleI	CACNNNNGTG	1 cut(s)	328
AluBI	AGCT	4 cut(s)	112, 151, 180, 277
AluI	AGCT	4 cut(s)	112, 151, 180, 277
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	192
Aor13HI	TCCGGA	2 cut(s)	174, 214
AoxI	GGCC	2 cut(s)	124, 332
ApeKI	GCWGC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	344, 650
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	175, 668
AvaII	GGWCC	2 cut(s)	344, 650
BanI	GGYRCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	364
BceAI	ACGGC	3 cut(s)	96, 158, 607
BclI	TGATCA	2 cut(s)	46, 237
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	192
BglII	AGATCT	1 cut(s)	536
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	2 cut(s)	344, 650
BmgT120I	GGNCC	2 cut(s)	344, 650
BmiI	GGNNCC	2 cut(s)	138, 346
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpuMI	CCSGG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	140, 326, 417
BsaWI	WCCGGW	2 cut(s)	174, 214
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 341, 647
Bse1I	ACTGG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	14
BseAI	TCCGGA	2 cut(s)	174, 214
BseDI	CCNNGG	3 cut(s)	140, 326, 417
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	3 cut(s)	133, 341, 647
BseMII	CTCAG	2 cut(s)	75, 526
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	364
BshFI	GGCC	2 cut(s)	126, 334
BshNI	GGYRCC	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	4 cut(s)	134, 175, 215, 385
BslI	CCNNNNNNNGG	3 cut(s)	133, 341, 647
BsmAI	GTCTC	1 cut(s)	192
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	126, 334
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp13I	TCCGGA	2 cut(s)	174, 214
Bsp143I	GATC	5 cut(s)	9, 46, 237, 423, 536
BspACI	CCGC	2 cut(s)	154, 296
BspANI	GGCC	2 cut(s)	126, 334
BspCNI	CTCAG	2 cut(s)	76, 525
BspEI	TCCGGA	2 cut(s)	174, 214
BspLI	GGNNCC	2 cut(s)	138, 346
BspT107I	GGYRCC	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	140, 326, 417
BssMI	GATC	5 cut(s)	9, 46, 237, 423, 536
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	100, 327, 553
BstDEI	CTNAG	2 cut(s)	84, 512
BstDSI	CCRYGG	2 cut(s)	140, 326
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	5 cut(s)	12, 49, 240, 426, 539
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	5 cut(s)	9, 46, 237, 423, 536
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 394, 614
BstSCI	CCNGG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	536
BstXI	CCANNNNNNTGG	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	126, 334
BtgI	CCRYGG	2 cut(s)	140, 326
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	193, 558
Cfr13I	GGNCC	2 cut(s)	344, 650
Csp6I	GTAC	2 cut(s)	96, 390
CviAII	CATG	3 cut(s)	263, 349, 466
CviQI	GTAC	2 cut(s)	96, 390
DdeI	CTNAG	2 cut(s)	84, 512
DpnI	GATC	5 cut(s)	11, 48, 239, 425, 538
DpnII	GATC	5 cut(s)	9, 46, 237, 423, 536
DraI	TTTAAA	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	344, 650
Eco53kI	GAGCTC	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	3 cut(s)	266, 352, 469
FaiI	YATR	6 cut(s)	71, 248, 264, 350, 467, 630
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	3 cut(s)	262, 348, 465
FbaI	TGATCA	2 cut(s)	46, 237
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	126, 334
HapII	CCGG	4 cut(s)	134, 175, 215, 385
Hin1II	CATG	3 cut(s)	266, 352, 469
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	63, 211, 218, 559
HpaII	CCGG	4 cut(s)	134, 175, 215, 385
HphI	GGTGA	2 cut(s)	175, 668
Hpy166II	GTNNAC	2 cut(s)	96, 253
Hpy188I	TCNGA	6 cut(s)	60, 160, 282, 360, 481, 692
Hpy188III	TCNNGA	2 cut(s)	175, 215
Hpy8I	GTNNAC	2 cut(s)	96, 253
HpyAV	CCTTC	3 cut(s)	367, 428, 706
HpyCH4III	ACNGT	3 cut(s)	100, 327, 553
HpyCH4V	TGCA	3 cut(s)	262, 302, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 394, 614
HpyF3I	CTNAG	2 cut(s)	84, 512
Hsp92II	CATG	3 cut(s)	266, 352, 469
Kpn2I	TCCGGA	2 cut(s)	174, 214
Ksp22I	TGATCA	2 cut(s)	46, 237
Kzo9I	GATC	5 cut(s)	9, 46, 237, 423, 536
LmnI	GCTCC	4 cut(s)	61, 156, 161, 177
LpnPI	CCDG	8 cut(s)	147, 188, 199, 228, 398, 566, 666, 694
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	5 cut(s)	11, 48, 239, 425, 538
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	5 cut(s)	9, 46, 237, 423, 536
MboII	GAAGA	2 cut(s)	18, 546
MflI	RGATCY	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	3 cut(s)	72, 103, 603
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	3 cut(s)	176, 345, 431
MroI	TCCGGA	2 cut(s)	174, 214
MseI	TTAA	3 cut(s)	206, 363, 488
MslI	CAYNNNNRTG	1 cut(s)	328
MspI	CCGG	4 cut(s)	134, 175, 215, 385
MspR9I	CCNGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	274, 394, 614
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	5 cut(s)	9, 46, 237, 423, 536
NlaIII	CATG	3 cut(s)	266, 352, 469
NlaIV	GGNNCC	2 cut(s)	138, 346
OliI	CACNNNNGTG	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	63, 218, 559
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	138, 346
PspPI	GGNCC	2 cut(s)	344, 650
PsuI	RGATCY	1 cut(s)	536
RsaI	GTAC	2 cut(s)	97, 391
RsaNI	GTAC	2 cut(s)	96, 390
RseI	CAYNNNNRTG	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	206, 363, 488
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	5 cut(s)	9, 46, 237, 423, 536
Sau96I	GGNCC	2 cut(s)	344, 650
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	6 cut(s)	114, 153, 168, 182, 279, 717
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	2 cut(s)	344, 650
SmiMI	CAYNNNNRTG	1 cut(s)	328
Sse9I	AATT	3 cut(s)	72, 103, 603
SsiI	CCGC	2 cut(s)	154, 296
SspI	AATATT	1 cut(s)	355
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	100, 327, 553
TaqI	TCGA	2 cut(s)	221, 612
TasI	AATT	3 cut(s)	72, 103, 603
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	63, 218, 559
Tru1I	TTAA	3 cut(s)	206, 363, 488
Tru9I	TTAA	3 cut(s)	206, 363, 488
TscAI	CASTG	2 cut(s)	193, 558
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	5 cut(s)	23, 239, 365, 447, 678
TspRI	CASTG	2 cut(s)	193, 558
VpaK11BI	GGWCC	2 cut(s)	344, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.