Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Forward (+)

86467466 .. 86469022

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35481

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGCAAGCTTCCCAGAGAACAAGTCTCGGATGCGCAAGCACTTCTAGACGTAACTAAAACCGTGGTGGCCCCTATTATGTCACATCATAATGGGGAAACTACCACAAGCGATTTCATTACCAGTTTGATTTCAAATTTCGGGCAAGTCTATAGGTCATCAGTGAACGAAGATGATGCCCATGTCTCACTTAACTGGAAAGATATTGGACTTTCTGTTCCACCAACACTCAAGAGGGCTTTTGGATGTTGCACAATGCTTGGACCCATGGATACTGAGTATAAGGAAAGGAAGGCTGCTGTCCGCCGTACAAAGCCTACCACAGCTCATCTGCCGACACAGATTAATGAAGGAGGGGAAGCAAATGAGACAGACTTAAACATGTTAACAATGTATGAGATATTAAAGAAGAAGAAGAATGTCGAACTCAGTTGTTTGATACTAAATAGAAGGTCTTTTGCACAGACCGTGGAGAATCTATTCGCTCTTTCATTCCTCGCAAAAGACGGCAGAGTTAGAATTGCCGTCGAAGCAAATGGTTCTCATGTCGTTTCACCTACGAATGGTCCTGTTGCCAATGCAGTGGCTTATCACCATTTTGTGTTCCGATTTGATTTCAAGGACTGGAAGATAATGACTGAAATGGTGGCTGTTGGTGAGGAGCTGATGCCTCATAGAGACCACACAAAGTGCACACCTGCCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nse4_C

Protein Analysis

235

Amino Acids

26.2

Weight (kDa)

7.12

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nse4_C	PF08743	141 - 223	2.8e-20	Nse4 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	36
AciI	CCGC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	136
AdeI	CACNNNGTG	1 cut(s)	690
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	135, 619
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	10, 326, 664
AluI	AGCT	3 cut(s)	10, 326, 664
Alw21I	GWGCWC	1 cut(s)	695
Alw26I	GTCTC	4 cut(s)	31, 190, 362, 672
Alw44I	GTGCAC	1 cut(s)	691
AoxI	GGCC	1 cut(s)	69
ApaLI	GTGCAC	1 cut(s)	691
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	136
AseI	ATTAAT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	70, 263, 566
AsuHPI	GGTGA	3 cut(s)	546, 584, 668
AvaII	GGWCC	2 cut(s)	263, 566
BaeGI	GKGCMC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	695
BbvI	GCAGC	1 cut(s)	283
BceAI	ACGGC	3 cut(s)	291, 509, 523
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	4 cut(s)	31, 190, 362, 672
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme18I	GGWCC	2 cut(s)	263, 566
BmgT120I	GGNCC	3 cut(s)	70, 263, 566
BmiI	GGNNCC	2 cut(s)	72, 265
BmsI	GCATC	3 cut(s)	22, 166, 657
BpuEI	CTTGAG	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	672
BsaJI	CCNNGG	3 cut(s)	63, 267, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	3 cut(s)	123, 200, 629
BseDI	CCNNGG	3 cut(s)	63, 267, 468
BseGI	GGATG	2 cut(s)	37, 251
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMII	CTCAG	2 cut(s)	267, 442
BseNI	ACTGG	3 cut(s)	123, 200, 629
BseRI	GAGGAG	1 cut(s)	674
BseSI	GKGCMC	1 cut(s)	695
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	695
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	4 cut(s)	31, 190, 362, 672
BsnI	GGCC	1 cut(s)	71
Bso31I	GGTCTC	1 cut(s)	672
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	268, 441
BspLI	GGNNCC	2 cut(s)	72, 265
BspTNI	GGTCTC	1 cut(s)	672
BsrI	ACTGG	3 cut(s)	123, 200, 629
BssECI	CCNNGG	3 cut(s)	63, 267, 468
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	64, 469
BstC8I	GCNNGC	2 cut(s)	8, 39
BstDEI	CTNAG	3 cut(s)	276, 428, 705
BstDSI	CCRYGG	3 cut(s)	63, 267, 468
BstF5I	GGATG	2 cut(s)	37, 251
BstHHI	GCGC	1 cut(s)	37
BstMAI	GTCTC	4 cut(s)	31, 190, 362, 672
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNSI	RCATGY	1 cut(s)	385
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	695
BstV1I	GCAGC	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	3 cut(s)	63, 267, 468
BtsCI	GGATG	2 cut(s)	37, 251
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	168, 588
Cac8I	GCNNGC	2 cut(s)	8, 39
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	70, 263, 566
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	4 cut(s)	182, 268, 382, 545
CviJI	RGCY	9 cut(s)	10, 71, 239, 296, 316, 326, 587, 650, 664
CviKI_1	RGCY	9 cut(s)	10, 71, 239, 296, 316, 326, 587, 650, 664
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	3 cut(s)	276, 428, 705
DraIII	CACNNNGTG	1 cut(s)	690
EciI	GGCGGA	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	672
Eco47I	GGWCC	2 cut(s)	263, 566
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	4 cut(s)	185, 271, 385, 548
FatI	CATG	4 cut(s)	181, 267, 381, 544
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	2 cut(s)	44, 258
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	47
FspI	TGCGCA	1 cut(s)	36
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	4 cut(s)	185, 271, 385, 548
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	1 cut(s)	475
HpaI	GTTAAC	1 cut(s)	387
HphI	GGTGA	3 cut(s)	546, 584, 668
Hpy166II	GTNNAC	3 cut(s)	166, 387, 693
Hpy188I	TCNGA	2 cut(s)	31, 608
Hpy188III	TCNNGA	2 cut(s)	47, 232
Hpy8I	GTNNAC	3 cut(s)	166, 387, 693
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	3 cut(s)	286, 344, 444
HpyCH4III	ACNGT	2 cut(s)	64, 469
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	252, 461, 581, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	3 cut(s)	276, 428, 705
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	4 cut(s)	185, 271, 385, 548
HspAI	GCGC	1 cut(s)	35
KspAI	GTTAAC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	661
LpnPI	CCDG	5 cut(s)	28, 136, 181, 582, 610
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	3 cut(s)	22, 166, 657
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	52, 81
MboII	GAAGA	5 cut(s)	182, 421, 424, 427, 640
MhlI	GDGCHC	1 cut(s)	695
MluCI	AATT	2 cut(s)	136, 519
MnlI	CCTC	5 cut(s)	228, 347, 506, 652, 681
MroXI	GAANNNNTTC	1 cut(s)	479
MseI	TTAA	5 cut(s)	192, 345, 377, 386, 404
MslI	CAYNNNNRTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	530
NcoI	CCATGG	1 cut(s)	267
NlaIII	CATG	4 cut(s)	185, 271, 385, 548
NlaIV	GGNNCC	2 cut(s)	72, 265
NmuCI	GTSAC	1 cut(s)	81
NsbI	TGCGCA	1 cut(s)	36
NspI	RCATGY	1 cut(s)	385
PciI	ACATGT	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	298
PscI	ACATGT	1 cut(s)	381
PshBI	ATTAAT	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	72, 265
PspPI	GGNCC	3 cut(s)	70, 263, 566
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	5 cut(s)	192, 345, 377, 386, 404
SatI	GCNGC	1 cut(s)	297
Sau96I	GGNCC	3 cut(s)	70, 263, 566
SduI	GDGCHC	1 cut(s)	695
SetI	ASST	8 cut(s)	12, 54, 158, 328, 455, 559, 666, 700
SfaNI	GCATC	3 cut(s)	22, 166, 657
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	263, 566
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	136, 519
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	64, 469
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	423, 528
TasI	AATT	2 cut(s)	136, 519
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	5 cut(s)	192, 345, 377, 386, 404
Tru9I	TTAA	5 cut(s)	192, 345, 377, 386, 404
TscAI	CASTG	2 cut(s)	168, 588
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	3 cut(s)	106, 363, 480
TspRI	CASTG	2 cut(s)	168, 588
VneI	GTGCAC	1 cut(s)	691
VpaK11BI	GGWCC	2 cut(s)	263, 566
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	46
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.