Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01079

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Reverse (-)

47088 .. 48500

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCTTGGACCCATGAATACTGAGTATAAGGAAAGGAAGGCAGCTGTTCGTACTAGACGAATAAAGCCTACCACAACTGATGAGCCTGAGGAGATTGATGCACAGGAAGAAGAAAAAACTGATACGGATAGGAATATGTCAACGATGTTTGAGATATTAAGAAAGAAGAAACGTGTCCGACTGGAATGTTTAATATTAAACAGAATGTTCTTTGCACAGACAGTCGAGAATTTATTTGCTCTTTCATTCCTTGTTAAAGATGGCCGGGCTGAAATCATAGTTGATGCAAATCGCGTTCATTTTGTTGCACCAAGGAATGCTGCCAAGGCCACTGAAGTAGCATCTCGTGAGGTTGTTTATAGACACTTTGTGTTCCGATTTGATTTCAAGGACTGGAAGTTGATGAAGGATATGGTGCCTGATGGTGAGGAGCTAATGCCACATAGAATCCCTGCCAACTCTGAACCTGCCTCTCAGGAGGAACCAGCTGCATACGTGTCCCAAACAGGACACACAACTCCAATTCGAAAGCTTTCCAGGAATCGCGGCAGGATGGTGCAGGAAGAAGCTATTGTAGAAGAATCCCCTGAATATGATAATGACCGTGCTGCTGGAGGCGCACTTCGCAGGTCCAAGCGCAAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nse4_C

Protein Analysis

215

Amino Acids

24.94

Weight (kDa)

8.94

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nse4_C	PF08743	59 - 145	1.4e-20	Nse4 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	475, 618
AccB1I	GGYRCC	1 cut(s)	415
AccII	CGCG	2 cut(s)	294, 546
AciI	CCGC	1 cut(s)	546
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	354
AdeI	CACNNNGTG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	52
AflIII	ACRYGT	2 cut(s)	172, 495
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	536
AluBI	AGCT	6 cut(s)	44, 433, 488, 532, 569, 643
AluI	AGCT	6 cut(s)	44, 433, 488, 532, 569, 643
AoxI	GGCC	2 cut(s)	262, 327
ApeKI	GCWGC	4 cut(s)	41, 320, 488, 608
ApoI	RAATTY	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	532
AspLEI	GCGC	2 cut(s)	620, 639
AspS9I	GGNCC	2 cut(s)	8, 630
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	437
AsuII	TTCGAA	1 cut(s)	526
AvaII	GGWCC	2 cut(s)	8, 630
AxyI	CCTNAGG	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	415
BauI	CACGAG	1 cut(s)	345
BbvI	GCAGC	4 cut(s)	53, 307, 475, 595
BccI	CCATC	3 cut(s)	254, 416, 547
BciT130I	CCWGG	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	644
BfuAI	ACCTGC	2 cut(s)	475, 618
BisI	GCNGC	5 cut(s)	42, 321, 489, 547, 609
BlsI	GCNGC	5 cut(s)	43, 322, 490, 548, 610
Bme1390I	CCNGG	2 cut(s)	266, 538
Bme18I	GGWCC	2 cut(s)	8, 630
BmgT120I	GGNCC	2 cut(s)	8, 630
BmiI	GGNNCC	3 cut(s)	10, 417, 483
BmrFI	CCNGG	2 cut(s)	266, 538
BmsI	GCATC	3 cut(s)	88, 274, 350
BpmI	CTGGAG	1 cut(s)	633
Bpu14I	TTCGAA	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	496
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	311, 324
Bse1I	ACTGG	2 cut(s)	186, 398
Bse21I	CCTNAGG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	2 cut(s)	311, 324
BseGI	GGATG	1 cut(s)	558
BseJI	GATNNNNATC	1 cut(s)	288
BseMII	CTCAG	3 cut(s)	12, 78, 488
BseNI	ACTGG	2 cut(s)	186, 398
BseRI	GAGGAG	2 cut(s)	104, 443
BseXI	GCAGC	4 cut(s)	53, 307, 475, 595
BsgI	GTGCAG	1 cut(s)	578
Bsh1236I	CGCG	2 cut(s)	294, 546
BshFI	GGCC	2 cut(s)	264, 329
BshNI	GGYRCC	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	264, 329
Bsp119I	TTCGAA	1 cut(s)	526
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	2 cut(s)	264, 329
BspCNI	CTCAG	3 cut(s)	13, 79, 487
BspFNI	CGCG	2 cut(s)	294, 546
BspLI	GGNNCC	3 cut(s)	10, 417, 483
BspMI	ACCTGC	2 cut(s)	475, 618
BspT104I	TTCGAA	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	186, 398
BssECI	CCNNGG	2 cut(s)	311, 324
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	2 cut(s)	311, 324
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	538
Bst4CI	ACNGT	2 cut(s)	223, 605
BstBAI	YACGTR	1 cut(s)	496
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	3 cut(s)	21, 87, 474
BstF5I	GGATG	1 cut(s)	558
BstFNI	CGCG	2 cut(s)	294, 546
BstHHI	GCGC	2 cut(s)	620, 639
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 617, 624
BstNI	CCWGG	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	264, 536
BstSFI	CTRYAG	1 cut(s)	644
BstUI	CGCG	2 cut(s)	294, 546
BstV1I	GCAGC	4 cut(s)	53, 307, 475, 595
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	264, 329
BtsCI	GGATG	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	2 cut(s)	475, 618
Cac8I	GCNNGC	1 cut(s)	641
CfoI	GCGC	2 cut(s)	620, 639
Cfr13I	GGNCC	2 cut(s)	8, 630
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	1 cut(s)	13
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	3 cut(s)	21, 87, 474
DraIII	CACNNNGTG	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	311, 324
Eco47I	GGWCC	2 cut(s)	8, 630
Eco57I	CTGAAG	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	536
EcoT14I	CCWWGG	2 cut(s)	311, 324
ErhI	CCWWGG	2 cut(s)	311, 324
FaeI	CATG	1 cut(s)	16
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	42, 321, 489, 547, 609
FokI	GGATG	1 cut(s)	565
Fsp4HI	GCNGC	5 cut(s)	42, 321, 489, 547, 609
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	2 cut(s)	619, 638
GluI	GCNGC	5 cut(s)	42, 321, 489, 547, 609
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	2 cut(s)	264, 329
HapII	CCGG	1 cut(s)	265
HhaI	GCGC	2 cut(s)	620, 639
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	2 cut(s)	618, 637
HinP1I	GCGC	2 cut(s)	618, 637
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	3 cut(s)	447, 541, 581
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	3 cut(s)	179, 377, 463
Hpy188III	TCNNGA	3 cut(s)	226, 347, 476
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	2 cut(s)	31, 400
HpyCH4III	ACNGT	2 cut(s)	223, 605
HpyCH4IV	ACGT	2 cut(s)	172, 495
HpyCH4V	TGCA	6 cut(s)	101, 215, 287, 308, 491, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 617, 624
HpyF3I	CTNAG	3 cut(s)	21, 87, 474
HpySE526I	ACGT	2 cut(s)	172, 495
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	2 cut(s)	618, 637
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	4 cut(s)	53, 307, 475, 595
LweI	GCATC	3 cut(s)	88, 274, 350
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	2 cut(s)	172, 495
MboII	GAAGA	5 cut(s)	119, 122, 178, 575, 590
MluCI	AATT	2 cut(s)	229, 522
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	6 cut(s)	82, 343, 421, 472, 481, 608
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	4 cut(s)	158, 191, 197, 255
MspA1I	CMGCKG	2 cut(s)	44, 488
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	2 cut(s)	266, 538
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	538
MvnI	CGCG	2 cut(s)	294, 546
MwoI	GCNNNNNNNGC	3 cut(s)	326, 617, 624
NciI	CCSGG	1 cut(s)	266
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	3 cut(s)	10, 417, 483
NspV	TTCGAA	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PctI	GAATGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	447, 541, 581
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	5 cut(s)	43, 322, 490, 548, 610
Ppu21I	YACGTR	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	3 cut(s)	10, 417, 483
PspPI	GGNCC	2 cut(s)	8, 630
PvuII	CAGCTG	2 cut(s)	44, 488
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SaqAI	TTAA	4 cut(s)	158, 191, 197, 255
SatI	GCNGC	5 cut(s)	42, 321, 489, 547, 609
Sau96I	GGNCC	2 cut(s)	8, 630
ScrFI	CCNGG	2 cut(s)	266, 538
SfaNI	GCATC	3 cut(s)	88, 274, 350
SfcI	CTRYAG	1 cut(s)	644
SfuI	TTCGAA	1 cut(s)	526
SinI	GGWCC	2 cut(s)	8, 630
Sse9I	AATT	2 cut(s)	229, 522
SsiI	CCGC	1 cut(s)	546
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	264, 536
StyI	CCWWGG	2 cut(s)	311, 324
TaaI	ACNGT	2 cut(s)	223, 605
TaiI	ACGT	2 cut(s)	175, 498
TaqI	TCGA	2 cut(s)	225, 526
TasI	AATT	2 cut(s)	229, 522
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	3 cut(s)	447, 541, 581
Tru1I	TTAA	4 cut(s)	158, 191, 197, 255
Tru9I	TTAA	4 cut(s)	158, 191, 197, 255
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	4 cut(s)	41, 320, 488, 608
TspDTI	ATGAA	4 cut(s)	29, 234, 287, 419
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	8, 630
XapI	RAATTY	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.