Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007249.1

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Reverse (-)

15044 .. 16381

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007249.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ctgttgacctctgtacgggcacataacaaggaaggaattacagcttcgggtttcgtcaactgtattcttagtgacttcaggaaaccgagtggcagctctatatcttggagggacattgggaatgcggtatcacatgttttccagagaagccctcgatgctgcactatgattgggccaatgaatgctgatgtgaagcaacgaaaggtttatcaacgtcaaaaacgtgggaatcctacacacaatgatacccctaaagagcttggtgatgctgttgttgaagaggaaacagagactgttaaaaatgtggcaactatgtttgatattttgaagaaaaagagaagggtcaggcttgaatatctagttttgaatggaaattctttttcacagacagtggaaaatgtgtttgccctatcgtttcttgttaaagatgggcgagtcgaaataaaagtgaacgaggaaggccatcatctgtttttctctgtgtttggtatgtcagcgccaaggaatgctcctgctgccgaagcaattgcctcaggcgctgttacttactgccacttaatcttcagatttgatttcaaggactggaagttaatgaaagaagttgttgggaatggggaggagctgatgccacataggtttccagctgacgatgtatcaaacaattcgcaactggaagaacctcaagcaacaacaggtacaacaccaattaggaagttctcaaggaacagaggcttggttataagggagcagcccgttgggactgatagtagcagcagatcaatcgctgaagacagcgctgagtgcgattatgctgcaagcgcttctgccactcgtaaagggaagcgtaaactgatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nse4_C

Protein Analysis

285

Amino Acids

31.75

Weight (kDa)

9.18

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	740
AciI	CCGC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	3 cut(s)	61, 547, 807
AfaI	GTAC	2 cut(s)	15, 697
AfeI	AGCGCT	2 cut(s)	796, 820
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	5 cut(s)	278, 328, 353, 367, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AluBI	AGCT	5 cut(s)	44, 96, 259, 622, 644
AluI	AGCT	5 cut(s)	44, 96, 259, 622, 644
Alw26I	GTCTC	1 cut(s)	284
AlwNI	CAGNNNCTG	2 cut(s)	293, 539
Aor51HI	AGCGCT	2 cut(s)	796, 820
AoxI	GGCC	2 cut(s)	173, 460
ApeKI	GCWGC	6 cut(s)	93, 159, 515, 748, 771, 812
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	4 cut(s)	499, 539, 797, 821
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	532
BaeGI	GKGCMC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	795
BbvI	GCAGC	6 cut(s)	105, 146, 502, 760, 783, 799
BccI	CCATC	2 cut(s)	422, 471
BcgI	CGANNNNNNTGC	6 cut(s)	509, 543, 763, 794, 797, 828
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	359
BfoI	RGCGCY	4 cut(s)	500, 540, 798, 822
BisI	GCNGC	6 cut(s)	94, 160, 516, 749, 772, 813
BlsI	GCNGC	6 cut(s)	95, 161, 517, 750, 773, 814
BmgT120I	GGNCC	1 cut(s)	173
BmsI	GCATC	3 cut(s)	146, 256, 615
BpiI	GAAGAC	1 cut(s)	795
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpuEI	CTTGAG	2 cut(s)	666, 703
BsaJI	CCNNGG	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	2 cut(s)	587, 675
Bse21I	CCTNAGG	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	500
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	546, 789
BseNI	ACTGG	2 cut(s)	587, 675
BseRI	GAGGAG	1 cut(s)	632
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	6 cut(s)	105, 146, 502, 760, 783, 799
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	175, 462
BslFI	GGGAC	2 cut(s)	125, 772
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	125, 772
BsmI	GAATGC	3 cut(s)	127, 187, 511
BsnI	GGCC	2 cut(s)	175, 462
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	776
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	2 cut(s)	175, 462
BspCNI	CTCAG	2 cut(s)	545, 790
BsrI	ACTGG	2 cut(s)	587, 675
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	1 cut(s)	776
BssT1I	CCWWGG	1 cut(s)	500
Bst4CI	ACNGT	3 cut(s)	62, 295, 391
Bst6I	CTCTTC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	817
BstDEI	CTNAG	3 cut(s)	68, 532, 798
BstH2I	RGCGCY	4 cut(s)	500, 540, 798, 822
BstHHI	GCGC	4 cut(s)	499, 539, 797, 821
BstKTI	GATC	1 cut(s)	779
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	776
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 515, 521, 536, 801, 818
BstNSI	RCATGY	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	6 cut(s)	105, 146, 502, 760, 783, 799
BstV2I	GAAGAC	1 cut(s)	795
Bsu36I	CCTNAGG	1 cut(s)	532
BsuRI	GGCC	2 cut(s)	175, 462
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	817
CaiI	CAGNNNCTG	2 cut(s)	293, 539
CfoI	GCGC	4 cut(s)	499, 539, 797, 821
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	14, 696
CviAII	CATG	1 cut(s)	134
CviQI	GTAC	2 cut(s)	14, 696
DdeI	CTNAG	3 cut(s)	68, 532, 798
DpnI	GATC	1 cut(s)	778
DpnII	GATC	1 cut(s)	776
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	500
Eco47III	AGCGCT	2 cut(s)	796, 820
Eco57I	CTGAAG	3 cut(s)	61, 547, 807
Eco81I	CCTNAGG	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	1 cut(s)	137
FaqI	GGGAC	2 cut(s)	125, 772
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	6 cut(s)	94, 160, 516, 749, 772, 813
Fsp4HI	GCNGC	6 cut(s)	94, 160, 516, 749, 772, 813
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	4 cut(s)	498, 538, 796, 820
GluI	GCNGC	6 cut(s)	94, 160, 516, 749, 772, 813
HaeII	RGCGCY	4 cut(s)	500, 540, 798, 822
HaeIII	GGCC	2 cut(s)	175, 462
HhaI	GCGC	4 cut(s)	499, 539, 797, 821
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	4 cut(s)	497, 537, 795, 819
HinP1I	GCGC	4 cut(s)	497, 537, 795, 819
HincII	GTYRAC	2 cut(s)	6, 58
HindII	GTYRAC	2 cut(s)	6, 58
HinfI	GANTC	2 cut(s)	229, 435
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	4 cut(s)	6, 58, 451, 848
Hpy188I	TCNGA	1 cut(s)	566
Hpy188III	TCNNGA	2 cut(s)	79, 142
Hpy8I	GTNNAC	4 cut(s)	6, 58, 451, 848
HpyAV	CCTTC	3 cut(s)	26, 333, 452
HpyCH4III	ACNGT	3 cut(s)	62, 295, 391
HpyCH4IV	ACGT	2 cut(s)	214, 223
HpyCH4V	TGCA	2 cut(s)	162, 815
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 515, 521, 536, 801, 818
HpyF3I	CTNAG	3 cut(s)	68, 532, 798
HpySE526I	ACGT	2 cut(s)	214, 223
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	4 cut(s)	497, 537, 795, 819
Kzo9I	GATC	1 cut(s)	776
LmnI	GCTCC	3 cut(s)	514, 619, 745
LpnPI	CCDG	9 cut(s)	64, 155, 331, 519, 525, 568, 654, 656, 678
Lsp1109I	GCAGC	6 cut(s)	105, 146, 502, 760, 783, 799
LweI	GCATC	3 cut(s)	146, 256, 615
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	2 cut(s)	214, 223
MaeIII	GTNAC	2 cut(s)	71, 541
MalI	GATC	1 cut(s)	778
MboI	GATC	1 cut(s)	776
MboII	GAAGA	5 cut(s)	290, 340, 553, 686, 800
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	5 cut(s)	36, 373, 525, 661, 705
MlyI	GAGTC	1 cut(s)	444
MnlI	CCTC	9 cut(s)	19, 102, 162, 274, 448, 541, 610, 690, 722
MseI	TTAA	4 cut(s)	297, 423, 557, 590
MspA1I	CMGCKG	1 cut(s)	644
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	3 cut(s)	127, 187, 511
MwoI	GCNNNNNNNGC	6 cut(s)	156, 515, 521, 536, 801, 818
NdeII	GATC	1 cut(s)	776
NlaIII	CATG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	137
PciI	ACATGT	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PctI	GAATGC	3 cut(s)	127, 187, 511
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	6 cut(s)	95, 161, 517, 750, 773, 814
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PscI	ACATGT	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	740
PspPI	GGNCC	1 cut(s)	173
PstNI	CAGNNNCTG	2 cut(s)	293, 539
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	2 cut(s)	15, 697
RsaNI	GTAC	2 cut(s)	14, 696
SaqAI	TTAA	4 cut(s)	297, 423, 557, 590
SatI	GCNGC	6 cut(s)	94, 160, 516, 749, 772, 813
Sau3AI	GATC	1 cut(s)	776
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	22
SfaNI	GCATC	3 cut(s)	146, 256, 615
SmlI	CTYRAG	2 cut(s)	681, 718
SmoI	CTYRAG	2 cut(s)	681, 718
Sse9I	AATT	5 cut(s)	36, 373, 525, 661, 705
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	3 cut(s)	62, 295, 391
TaiI	ACGT	2 cut(s)	217, 226
TaqI	TCGA	2 cut(s)	154, 438
TasI	AATT	5 cut(s)	36, 373, 525, 661, 705
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	4 cut(s)	297, 423, 557, 590
Tru9I	TTAA	4 cut(s)	297, 423, 557, 590
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	6 cut(s)	93, 159, 515, 748, 771, 812
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	194, 608
TspRI	CASTG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.