Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025164.1

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Forward (+)

17584 .. 19409

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025164.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggctgagaaagaaggtactgtcaatattgagcgactcgacttcggccaagacccggagccccgccgaaagctccgctccggctacctcgccgtccggaagctgaccagtgagaaaagagacgatatagtgagtccggactcgaagaaatttgatgttgttattgacgaaattaacagacttcatgagcaagtacagcttcccagagaacaagtctcggatgcgcaagcacttctagacgtaactaaaaccgtggtggcccctattatgtcacatcttaatggggaaactaccacaagcgatttcattaccagtttgattacaaacttcgggcaagtcaataggtcatcagtgaacgaagatgatgcccatgtctctcttaactggaaagatattggactttctgttccaccaacactcgagagggcttttggatgttgcacaatgcttggacccatggatactgagtataaggaaaggaaggctgctgtccgccgtacgaagcctaccacagctcatctgccgacacagattaatgaaggaggggaagcaaatgagacagacttaaacatgttaacaatgtatgagatattaaagaagaagaagaatgtcgaactcagttgtttgatactaaatagaaggtcttttgcacagaccgtggagaatctattcgctctttcattcctcgcaaaagacggcagagttagaattgccgttgaagcaaatggttctcatgtcgtttcacctacgaatggtcctgttgccaatgcagtggcttatcaccattttgtgttccgatttgatttcaaggactggaagaaactgggaatcagcgcatctccgtatcaaaatcccattcgtagaaatcagtcgataatgactgaaatggtggctgttggtgaggagctgatgccccatagagaccacacaaagtgcacacctgccccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nse4_C

Protein Analysis

316

Amino Acids

35.49

Weight (kDa)

6.77

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	225
AccBSI	CCGCTC	1 cut(s)	78
AccIII	TCCGGA	2 cut(s)	96, 136
AciI	CCGC	3 cut(s)	64, 76, 493
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	149
AdeI	CACNNNGTG	1 cut(s)	933
AfaI	GTAC	3 cut(s)	19, 195, 499
AfiI	CCNNNNNNNGG	2 cut(s)	55, 752
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	2 cut(s)	719, 808
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	5 cut(s)	73, 103, 199, 515, 907
AluI	AGCT	5 cut(s)	73, 103, 199, 515, 907
Alw21I	GWGCWC	1 cut(s)	938
Alw26I	GTCTC	5 cut(s)	114, 220, 379, 551, 915
Alw44I	GTGCAC	1 cut(s)	934
Ama87I	CYCGRG	1 cut(s)	419
Aor13HI	TCCGGA	2 cut(s)	96, 136
AoxI	GGCC	2 cut(s)	46, 258
ApaLI	GTGCAC	1 cut(s)	934
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	149
AseI	ATTAAT	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	668
AspLEI	GCGC	2 cut(s)	226, 836
AspS9I	GGNCC	3 cut(s)	259, 452, 755
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	735, 773, 911
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	2 cut(s)	452, 755
BaeGI	GKGCMC	1 cut(s)	938
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	938
BbvI	GCAGC	1 cut(s)	472
BceAI	ACGGC	4 cut(s)	77, 480, 698, 712
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciVI	GTATCC	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	5 cut(s)	114, 220, 379, 551, 915
BfaI	CTAG	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	2 cut(s)	452, 755
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	3 cut(s)	259, 452, 755
BmiI	GGNNCC	3 cut(s)	60, 261, 454
BmrFI	CCNGG	1 cut(s)	56
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	4 cut(s)	211, 355, 845, 900
BmuI	ACTGGG	1 cut(s)	833
BpuMI	CCSGG	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	915
BsaJI	CCNNGG	3 cut(s)	252, 456, 657
BsaWI	WCCGGW	2 cut(s)	96, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 752
Bse1I	ACTGG	5 cut(s)	108, 312, 389, 818, 828
BseAI	TCCGGA	2 cut(s)	96, 136
BseDI	CCNNGG	3 cut(s)	252, 456, 657
BseGI	GGATG	2 cut(s)	226, 440
BseLI	CCNNNNNNNGG	2 cut(s)	55, 752
BseMII	CTCAG	2 cut(s)	456, 631
BseNI	ACTGG	5 cut(s)	108, 312, 389, 818, 828
BseRI	GAGGAG	1 cut(s)	917
BseSI	GKGCMC	1 cut(s)	938
BseXI	GCAGC	1 cut(s)	472
BshFI	GGCC	2 cut(s)	48, 260
BsiHKAI	GWGCWC	1 cut(s)	938
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	4 cut(s)	56, 81, 97, 137
BsiWI	CGTACG	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	55, 752
BsmAI	GTCTC	5 cut(s)	114, 220, 379, 551, 915
BsmBI	CGTCTC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	48, 260
Bso31I	GGTCTC	1 cut(s)	915
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	63, 938
Bsp13I	TCCGGA	2 cut(s)	96, 136
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	3 cut(s)	64, 76, 493
BspANI	GGCC	2 cut(s)	48, 260
BspCNI	CTCAG	2 cut(s)	457, 630
BspEI	TCCGGA	2 cut(s)	96, 136
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	60, 261, 454
BspTNI	GGTCTC	1 cut(s)	915
BsrBI	CCGCTC	1 cut(s)	78
BsrI	ACTGG	5 cut(s)	108, 312, 389, 818, 828
BssECI	CCNNGG	3 cut(s)	252, 456, 657
BssT1I	CCWWGG	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	22, 253, 658
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	4 cut(s)	6, 465, 617, 948
BstDSI	CCRYGG	3 cut(s)	252, 456, 657
BstF5I	GGATG	2 cut(s)	226, 440
BstHHI	GCGC	2 cut(s)	226, 836
BstMAI	GTCTC	5 cut(s)	114, 220, 379, 551, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 719
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	938
BstV1I	GCAGC	1 cut(s)	472
BstXI	CCANNNNNNTGG	1 cut(s)	772
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	48, 260
BtgI	CCRYGG	3 cut(s)	252, 456, 657
BtsCI	GGATG	2 cut(s)	226, 440
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	3 cut(s)	115, 357, 777
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	2 cut(s)	226, 836
Cfr13I	GGNCC	3 cut(s)	259, 452, 755
Csp6I	GTAC	3 cut(s)	18, 194, 498
CviAII	CATG	5 cut(s)	185, 371, 457, 571, 734
CviQI	GTAC	3 cut(s)	18, 194, 498
DdeI	CTNAG	4 cut(s)	6, 465, 617, 948
DraIII	CACNNNGTG	1 cut(s)	933
EaeI	YGGCCR	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	915
Eco47I	GGWCC	2 cut(s)	452, 755
Eco88I	CYCGRG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	5 cut(s)	188, 374, 460, 574, 737
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	5 cut(s)	184, 370, 456, 570, 733
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	2 cut(s)	233, 447
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	1 cut(s)	236
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	2 cut(s)	225, 835
GluI	GCNGC	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	48, 260
HapII	CCGG	4 cut(s)	56, 81, 97, 137
HhaI	GCGC	2 cut(s)	226, 836
Hin1II	CATG	5 cut(s)	188, 374, 460, 574, 737
Hin6I	GCGC	2 cut(s)	224, 834
HinP1I	GCGC	2 cut(s)	224, 834
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	5 cut(s)	36, 133, 140, 664, 828
HpaI	GTTAAC	1 cut(s)	576
HpaII	CCGG	4 cut(s)	56, 81, 97, 137
HphI	GGTGA	3 cut(s)	735, 773, 911
Hpy166II	GTNNAC	3 cut(s)	355, 576, 936
Hpy188I	TCNGA	2 cut(s)	220, 797
Hpy188III	TCNNGA	5 cut(s)	97, 137, 185, 236, 421
Hpy8I	GTNNAC	3 cut(s)	355, 576, 936
HpyAV	CCTTC	4 cut(s)	8, 475, 533, 633
HpyCH4III	ACNGT	3 cut(s)	22, 253, 658
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	441, 650, 770, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 719
HpyF3I	CTNAG	4 cut(s)	6, 465, 617, 948
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	188, 374, 460, 574, 737
HspAI	GCGC	2 cut(s)	224, 834
Kpn2I	TCCGGA	2 cut(s)	96, 136
KspAI	GTTAAC	1 cut(s)	576
LmnI	GCTCC	4 cut(s)	58, 78, 83, 904
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	4 cut(s)	211, 355, 845, 900
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	241, 270
MbiI	CCGCTC	1 cut(s)	78
MboII	GAAGA	6 cut(s)	157, 371, 610, 613, 616, 829
MhlI	GDGCHC	2 cut(s)	63, 938
MluCI	AATT	3 cut(s)	149, 171, 708
MlyI	GAGTC	3 cut(s)	30, 134, 142
MnlI	CCTC	5 cut(s)	98, 417, 536, 695, 895
MroI	TCCGGA	2 cut(s)	96, 136
MroXI	GAANNNNTTC	1 cut(s)	668
MseI	TTAA	7 cut(s)	174, 279, 381, 534, 566, 575, 593
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	4 cut(s)	56, 81, 97, 137
MspR9I	CCNGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	196, 719
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	456
NlaIII	CATG	5 cut(s)	188, 374, 460, 574, 737
NlaIV	GGNNCC	3 cut(s)	60, 261, 454
NmuCI	GTSAC	1 cut(s)	270
NsbI	TGCGCA	1 cut(s)	225
NspI	RCATGY	1 cut(s)	574
PaeR7I	CTCGAG	1 cut(s)	419
PagI	TCATGA	1 cut(s)	184
PciI	ACATGT	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	668
PfeI	GAWTC	2 cut(s)	664, 828
Pfl23II	CGTACG	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	3 cut(s)	30, 134, 141
PpsI	GAGTC	3 cut(s)	30, 134, 141
PscI	ACATGT	1 cut(s)	570
PshBI	ATTAAT	1 cut(s)	534
PspLI	CGTACG	1 cut(s)	497
PspN4I	GGNNCC	3 cut(s)	60, 261, 454
PspPI	GGNCC	3 cut(s)	259, 452, 755
RsaI	GTAC	3 cut(s)	19, 195, 499
RsaNI	GTAC	3 cut(s)	18, 194, 498
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	7 cut(s)	174, 279, 381, 534, 566, 575, 593
SatI	GCNGC	1 cut(s)	486
Sau96I	GGNCC	3 cut(s)	259, 452, 755
SchI	GAGTC	3 cut(s)	30, 134, 142
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	63, 938
SfaNI	GCATC	4 cut(s)	211, 355, 845, 900
Sfr274I	CTCGAG	1 cut(s)	419
SinI	GGWCC	2 cut(s)	452, 755
SlaI	CTCGAG	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	149, 171, 708
SsiI	CCGC	3 cut(s)	64, 76, 493
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	3 cut(s)	22, 253, 658
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	5 cut(s)	39, 143, 420, 612, 872
TasI	AATT	3 cut(s)	149, 171, 708
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	664, 828
Tru1I	TTAA	7 cut(s)	174, 279, 381, 534, 566, 575, 593
Tru9I	TTAA	7 cut(s)	174, 279, 381, 534, 566, 575, 593
TscAI	CASTG	3 cut(s)	115, 357, 777
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	4 cut(s)	173, 295, 552, 669
TspGWI	ACGGA	1 cut(s)	831
TspRI	CASTG	3 cut(s)	115, 357, 777
VneI	GTGCAC	1 cut(s)	934
VpaK11BI	GGWCC	2 cut(s)	452, 755
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	574
XhoI	CTCGAG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	668
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.