Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000940

Physical Location & Seq

Genomic Coordinates Forward (+)

86719692 .. 86721693

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG544700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTGAGAAAGAAGGTACTGTCAATATTGAGCGACTCGACTTCGGCCAAGACCCGGAGCCCCGCCGAAAGCTCCGCTCCGGCTACCTCGCCGTCCGGAAGCTGACCAGTGAGAAAAGAGACGATATAGTGAGTCCGGACTCAAAGAAATTTGATGTTGTTATTGACGAAATTAACAGGCTTCATGAGCAAGTACAGCTTCCCAGAGAACAAGTCTCGGATGCGCAAGCACTTCTAGACGTAACTAAAATCGTGGTGTCCCCTATTATGTCACATCTTAATGGGGAAACTACCACAAGCGATTTCATTACCAGTTTGATTACAAATTTCGGGCAAGTCAATAGGTCATCAGTGAACGAAGATGATGCCCATGTCTCACTTAACTGGAAAGATATTGGACTTTCTGTTCCACCAACACTCAAGAGGGCTTTTGGATGTTGCACAATGCTTGGACCCATGGATACTGAGTATAAGGAAAGGAAGGCTGCTGTCCGCCGTACGAAGCCTACCACAGCTCATCTGCCGACACAGATTAATGAAGGAGGGGAAACAAATGAGACAGACTTAAACATGTTAACAATGTATGAGATTTTAAAGAAGAAGAAGAAGAATGTCGAACTCAGTTGTTTGATACTAAATAGAAGGTCTTTTGCACAGACCGTGGAGAATCTATTCGCTCTTTCATTCCTCGCAAAAGACGGCAGAGTTAGAATTGCCGTTGAAGCAAATGGTTCTCATGTCGTTTCACCTACGAATGGTCCTGTTGCCAATGCAGTGGCTTTTCACCATTTTGTGTTCCGATTTGATTTCAAGGACTGGAAGATAATGACTGAAATGGTGGCTGTTGGTGAGGAGCTGATGCCTCATAGAGACCACACAAAGTGCACACCTGCCCCTTCGGAGGAACCAGCAGCATTCAATTCCCAAACAGCCACAGCCCCACAGACAAACCGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nse4_C

Protein Analysis

319

Amino Acids

35.76

Weight (kDa)

6.52

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nse4_C	PF08743	205 - 287	2.5e-19	Nse4 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51130 AT3G20760
fragaria_vesca	FvH4_3g44140 FvH4_3g44140 FvH4_3g44150 FvH4_3g44150 FvH4_6g22450 FvH4_6g22450
malus_domestica	MD03G1016900.v1.1 MD11G1017500.v1.1 MD12G1059300.v1.1
prunus_persica	Prupe.6G015300_v2.0.a1 Prupe.7G076100_v2.0.a1
pyrus_communis	pycom03g01450 pycom11g01240 pycom12g05160
rosa_chinensis	RchiOBHm_Chr3g0479811 RchiOBHm_Chr5g0080471 RchiOBHm_Chr5g0080481 RchiOBHm_Chr5g0080501
rosa_laevigata	RLG00000023530 RLG00000036859 RLG00000036860 RLG00000036861
rosa_multiflora	Rmu_co8034794.1_g000001 Rmu_co8187596.1_g000001 Rmu_sc0004329.1_g000005 Rmu_sc0007249.1_g000003 Rmu_sc0020711.1_g000002 Rmu_sc0020711.1_g000004 Rmu_sc0025164.1_g000002 Rmu_sc0025164.1_g000005
rosa_roxburghii	Rroxscaffold_1G00002910 Rroxscaffold_1G00002920 Rroxscaffold_1G00002930 Rroxscaffold_6G00401950
rosa_rugosa	Rorug03G0179000 Rorug05G0469200 Rorug05G0469300 Rorug05G0469300
rosa_samantha	Rh3AG229400 Rh3BG262600 Rh3BG313200 Rh3CG259500 Rh3CG311800 Rh3DG255700 Rh5AG522800 Rh5AG522900 Rh5AG523000 Rh5BG544400 Rh5BG544500 Rh5BG544700 Rh5CG568000 Rh5CG568100 Rh5DG554700 Rh5DG554800 Rh5DG554900 Rh5DG555000
rosa_wichuraiana	Rw0G002240 Rw0G015270 Rw0G019230 Rw0G023200 Rw0G023210 Rw0G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	898
Acc16I	TGCGCA	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	898
AccBSI	CCGCTC	1 cut(s)	78
AccIII	TCCGGA	2 cut(s)	96, 136
AciI	CCGC	3 cut(s)	64, 76, 493
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	149, 325
AdeI	CACNNNGTG	1 cut(s)	882
AfaI	GTAC	3 cut(s)	19, 195, 499
AfiI	CCNNNNNNNGG	3 cut(s)	55, 755, 901
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	722, 811, 919
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	5 cut(s)	73, 103, 199, 515, 856
AluI	AGCT	5 cut(s)	73, 103, 199, 515, 856
Alw21I	GWGCWC	1 cut(s)	887
Alw26I	GTCTC	5 cut(s)	114, 220, 379, 551, 864
Alw44I	GTGCAC	1 cut(s)	883
Aor13HI	TCCGGA	2 cut(s)	96, 136
AoxI	GGCC	1 cut(s)	46
ApaLI	GTGCAC	1 cut(s)	883
ApeKI	GCWGC	2 cut(s)	485, 911
ApoI	RAATTY	2 cut(s)	149, 325
AseI	ATTAAT	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	452, 758
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	738, 776, 860
AvaII	GGWCC	2 cut(s)	452, 758
BaeGI	GKGCMC	1 cut(s)	887
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	887
BbvI	GCAGC	2 cut(s)	472, 923
BceAI	ACGGC	4 cut(s)	77, 480, 701, 715
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciVI	GTATCC	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	5 cut(s)	114, 220, 379, 551, 864
BfaI	CTAG	1 cut(s)	236
BfuAI	ACCTGC	1 cut(s)	898
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	486, 912
BlsI	GCNGC	2 cut(s)	487, 913
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	2 cut(s)	452, 758
BmgT120I	GGNCC	2 cut(s)	452, 758
BmiI	GGNNCC	3 cut(s)	60, 454, 906
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	3 cut(s)	211, 355, 849
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	864
BsaJI	CCNNGG	2 cut(s)	456, 660
BsaWI	WCCGGW	3 cut(s)	96, 136, 951
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 755, 901
Bse1I	ACTGG	4 cut(s)	108, 312, 389, 821
BseAI	TCCGGA	2 cut(s)	96, 136
BseDI	CCNNGG	2 cut(s)	456, 660
BseGI	GGATG	2 cut(s)	226, 440
BseLI	CCNNNNNNNGG	3 cut(s)	55, 755, 901
BseMII	CTCAG	2 cut(s)	456, 634
BseNI	ACTGG	4 cut(s)	108, 312, 389, 821
BseRI	GAGGAG	1 cut(s)	866
BseSI	GKGCMC	1 cut(s)	887
BseXI	GCAGC	2 cut(s)	472, 923
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	887
BsiSI	CCGG	5 cut(s)	56, 81, 97, 137, 952
BsiWI	CGTACG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	55, 755, 901
BsmAI	GTCTC	5 cut(s)	114, 220, 379, 551, 864
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	914
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	864
Bsp1286I	GDGCHC	2 cut(s)	63, 887
Bsp13I	TCCGGA	2 cut(s)	96, 136
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	3 cut(s)	64, 76, 493
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	2 cut(s)	457, 633
BspEI	TCCGGA	2 cut(s)	96, 136
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	60, 454, 906
BspMI	ACCTGC	1 cut(s)	898
BspTNI	GGTCTC	1 cut(s)	864
BsrBI	CCGCTC	1 cut(s)	78
BsrI	ACTGG	4 cut(s)	108, 312, 389, 821
BssECI	CCNNGG	2 cut(s)	456, 660
BssT1I	CCWWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	22, 661
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	6, 465, 620
BstDSI	CCRYGG	2 cut(s)	456, 660
BstF5I	GGATG	2 cut(s)	226, 440
BstHHI	GCGC	1 cut(s)	226
BstMAI	GTCTC	5 cut(s)	114, 220, 379, 551, 864
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 196, 722
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	887
BstV1I	GCAGC	2 cut(s)	472, 923
BstXI	CCANNNNNNTGG	1 cut(s)	775
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	2 cut(s)	456, 660
BtsCI	GGATG	2 cut(s)	226, 440
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	115, 357, 780
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	452, 758
Csp6I	GTAC	3 cut(s)	18, 194, 498
CviAII	CATG	5 cut(s)	185, 371, 457, 571, 737
CviQI	GTAC	3 cut(s)	18, 194, 498
DdeI	CTNAG	3 cut(s)	6, 465, 620
DraI	TTTAAA	1 cut(s)	594
DraIII	CACNNNGTG	1 cut(s)	882
EaeI	YGGCCR	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	864
Eco47I	GGWCC	2 cut(s)	452, 758
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	5 cut(s)	188, 374, 460, 574, 740
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	5 cut(s)	184, 370, 456, 570, 736
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	486, 912
FokI	GGATG	2 cut(s)	233, 447
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	486, 912
FspBI	CTAG	1 cut(s)	236
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	486, 912
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	5 cut(s)	56, 81, 97, 137, 952
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	5 cut(s)	188, 374, 460, 574, 740
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HinfI	GANTC	4 cut(s)	36, 133, 140, 667
HpaI	GTTAAC	1 cut(s)	576
HpaII	CCGG	5 cut(s)	56, 81, 97, 137, 952
HphI	GGTGA	3 cut(s)	738, 776, 860
Hpy166II	GTNNAC	3 cut(s)	355, 576, 885
Hpy188I	TCNGA	3 cut(s)	220, 800, 901
Hpy188III	TCNNGA	5 cut(s)	97, 137, 185, 236, 421
Hpy8I	GTNNAC	3 cut(s)	355, 576, 885
HpyAV	CCTTC	5 cut(s)	8, 475, 533, 636, 906
HpyCH4III	ACNGT	2 cut(s)	22, 661
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	441, 653, 773, 885
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 196, 722
HpyF3I	CTNAG	3 cut(s)	6, 465, 620
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	188, 374, 460, 574, 740
HspAI	GCGC	1 cut(s)	224
Kpn2I	TCCGGA	2 cut(s)	96, 136
KspAI	GTTAAC	1 cut(s)	576
LmnI	GCTCC	4 cut(s)	58, 78, 83, 853
Lsp1109I	GCAGC	2 cut(s)	472, 923
LweI	GCATC	3 cut(s)	211, 355, 849
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	241, 270
MbiI	CCGCTC	1 cut(s)	78
MboII	GAAGA	6 cut(s)	371, 610, 613, 616, 619, 832
MhlI	GDGCHC	2 cut(s)	63, 887
MluCI	AATT	5 cut(s)	149, 171, 325, 711, 919
MlyI	GAGTC	3 cut(s)	30, 134, 142
MnlI	CCTC	7 cut(s)	98, 417, 536, 698, 844, 873, 895
MroI	TCCGGA	2 cut(s)	96, 136
MroXI	GAANNNNTTC	1 cut(s)	671
MseI	TTAA	7 cut(s)	174, 279, 381, 534, 566, 575, 593
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	5 cut(s)	56, 81, 97, 137, 952
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	914
MwoI	GCNNNNNNNGC	3 cut(s)	187, 196, 722
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	456
NlaIII	CATG	5 cut(s)	188, 374, 460, 574, 740
NlaIV	GGNNCC	3 cut(s)	60, 454, 906
NmuCI	GTSAC	1 cut(s)	270
NsbI	TGCGCA	1 cut(s)	225
NspI	RCATGY	1 cut(s)	574
PagI	TCATGA	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	898
PciI	ACATGT	1 cut(s)	570
PctI	GAATGC	1 cut(s)	914
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	1 cut(s)	667
Pfl23II	CGTACG	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	487, 913
PleI	GAGTC	3 cut(s)	30, 134, 141
PpsI	GAGTC	3 cut(s)	30, 134, 141
PscI	ACATGT	1 cut(s)	570
PshBI	ATTAAT	1 cut(s)	534
PspLI	CGTACG	1 cut(s)	497
PspN4I	GGNNCC	3 cut(s)	60, 454, 906
PspPI	GGNCC	2 cut(s)	452, 758
RsaI	GTAC	3 cut(s)	19, 195, 499
RsaNI	GTAC	3 cut(s)	18, 194, 498
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	7 cut(s)	174, 279, 381, 534, 566, 575, 593
SatI	GCNGC	2 cut(s)	486, 912
Sau96I	GGNCC	2 cut(s)	452, 758
SchI	GAGTC	3 cut(s)	30, 134, 142
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	63, 887
SfaNI	GCATC	3 cut(s)	211, 355, 849
SinI	GGWCC	2 cut(s)	452, 758
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	5 cut(s)	149, 171, 325, 711, 919
SsiI	CCGC	3 cut(s)	64, 76, 493
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	22, 661
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	39, 615
TasI	AATT	5 cut(s)	149, 171, 325, 711, 919
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	7 cut(s)	174, 279, 381, 534, 566, 575, 593
Tru9I	TTAA	7 cut(s)	174, 279, 381, 534, 566, 575, 593
TscAI	CASTG	3 cut(s)	115, 357, 780
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	2 cut(s)	485, 911
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	4 cut(s)	173, 295, 552, 672
TspRI	CASTG	3 cut(s)	115, 357, 780
VneI	GTGCAC	1 cut(s)	883
VpaK11BI	GGWCC	2 cut(s)	452, 758
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	2 cut(s)	149, 325
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.