Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037164.1

Orthogroup ID

OG0001646

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1937

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037164.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 718 bp

atggcaactactgctgcttccagtctgcaaatggcaacagcaagaccttgcatttcctcttctcatagagttttcaggtctggtgccgctatgcttcacggcaattttaaagtggtgtcatcgtctaagctctcgagtgcgtgccatatatcatctgtgcaatctttccagcggagctttacatcatcgtctttgaaaatggataagtttgttacaaaggcaatggctggatctagtgagaacaagccctctgggttgccaattaatctgaaaggtaagagagcattcatcgctggtgtagctgatgataatggatatgggtgggctattgcaaaatctctagctgctgcaggtgctgaaattctcgtgggaacttgggtccctgctttgaacatttttgagtccagcctgcgacgtgggaagtttgatgagtcacgcgtgttaccagatggttctttgatggagattactaaagtatatccccttgatgcagtttttgatacccttgacgatgttcctgaggaggtgaaatcaaataagcgctatgccggatccagtaactggactgtccaggaagctgctgaagccgtgaagagtgattttggaagtattgacattcttgttcactcccttgctaatggaccagaggtcactaaacctctgttggagacatcccggaaaggatatcttgctgctatatctgcatcaagttattctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005835 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016631 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

239

Amino Acids

25.39

Weight (kDa)

9.02

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05990 AT2G05990
fragaria_vesca	FvH4_3g44170 FvH4_3g44170 FvH4_6g22440 FvH4_6g22440 FvH4_6g22440 FvH4_6g22440
malus_domestica	MD03G1016800.v1.1 MD11G1017400.v1.1 MD12G1059500.v1.1 MD14G1058600.v1.1
prunus_persica	Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.7G076200_v2.0.a1 Prupe.7G076200_v2.0.a1
pyrus_communis	pycom03g01440 pycom11g01230 pycom12g05150 pycom14g04740
rosa_chinensis	RchiOBHm_Chr3g0479801 RchiOBHm_Chr5g0080511
rosa_laevigata	RLG00000023535 RLG00000036862
rosa_multiflora	Rmu_sc0004329.1_g000006 Rmu_sc0007249.1_g000002 Rmu_sc0037164.1_g000001 Rmu_sc0043089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002900 Rroxscaffold_6G00401960
rosa_rugosa	Rorug03G0179000 Rorug03G0179000 Rorug05G0469300
rosa_samantha	Rh3AG229300 Rh3BG262500 Rh3CG259400 Rh3DG255600 Rh5AG523100 Rh5BG544800 Rh5CG568200 Rh5DG555100
rosa_wichuraiana	Rw0G002250 Rw0G015280 Rw0G019220 Rw0G023190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	561
AccII	CGCG	1 cut(s)	438
AciI	CCGC	2 cut(s)	87, 172
AclWI	GGATC	3 cut(s)	238, 546, 559
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	603
AfeI	AGCGCT	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	561
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	196, 391
AhdI	GACNNNNNGTC	1 cut(s)	647
AjiI	CACGTC	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	5 cut(s)	130, 177, 302, 344, 578
AluI	AGCT	5 cut(s)	130, 177, 302, 344, 578
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	3 cut(s)	238, 546, 559
AlwNI	CAGNNNCTG	2 cut(s)	356, 561
Ama87I	CYCGRG	1 cut(s)	133
Aor51HI	AGCGCT	1 cut(s)	542
ApeKI	GCWGC	5 cut(s)	14, 344, 347, 578, 692
ApoI	RAATTY	1 cut(s)	360
AseI	ATTAAT	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	543
AspS9I	GGNCC	2 cut(s)	379, 641
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	1 cut(s)	538
AvaI	CYCGRG	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	379, 641
AxyI	CCTNAGG	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	83
BauI	CACGAG	1 cut(s)	365
BbvI	GCAGC	4 cut(s)	331, 334, 565, 679
BccI	CCATC	2 cut(s)	443, 454
BceAI	ACGGC	2 cut(s)	115, 572
BciT130I	CCWGG	1 cut(s)	572
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	2 cut(s)	234, 341
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	544
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	6 cut(s)	15, 87, 345, 348, 579, 693
BlsI	GCNGC	6 cut(s)	16, 88, 346, 349, 580, 694
Bme1390I	CCNGG	2 cut(s)	572, 676
Bme18I	GGWCC	2 cut(s)	379, 641
BmeRI	GACNNNNNGTC	1 cut(s)	647
BmeT110I	CYCGRG	1 cut(s)	133
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	379, 641
BmiI	GGNNCC	4 cut(s)	85, 380, 381, 553
BmrFI	CCNGG	2 cut(s)	572, 676
BmsI	GCATC	2 cut(s)	478, 713
BpuMI	CCSGG	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse1I	ACTGG	3 cut(s)	21, 555, 566
Bse21I	CCTNAGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	572
BseGI	GGATG	1 cut(s)	671
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	3 cut(s)	21, 555, 566
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	4 cut(s)	331, 334, 565, 679
Bsh1236I	CGCG	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	549, 676
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	230, 551
BspACI	CCGC	2 cut(s)	87, 172
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	4 cut(s)	85, 380, 381, 553
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	3 cut(s)	238, 546, 559
BspT107I	GGYRCC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	3 cut(s)	21, 555, 566
BssMI	GATC	2 cut(s)	230, 551
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	2 cut(s)	64, 587
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	142, 410
BstDEI	CTNAG	2 cut(s)	126, 519
BstF5I	GGATG	1 cut(s)	671
BstFNI	CGCG	1 cut(s)	438
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	543
BstKTI	GATC	2 cut(s)	233, 554
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	2 cut(s)	230, 551
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 290, 299, 353, 584, 701
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	570, 674
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	4 cut(s)	331, 334, 565, 679
BstX2I	RGATCY	2 cut(s)	230, 551
BstYI	RGATCY	2 cut(s)	230, 551
Bsu36I	CCTNAGG	1 cut(s)	519
BtgZI	GCGATG	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	671
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	2 cut(s)	142, 410
CaiI	CAGNNNCTG	2 cut(s)	356, 561
CfoI	GCGC	1 cut(s)	543
Cfr13I	GGNCC	2 cut(s)	379, 641
DdeI	CTNAG	2 cut(s)	126, 519
DpnI	GATC	2 cut(s)	232, 553
DpnII	GATC	2 cut(s)	230, 551
DraI	TTTAAA	1 cut(s)	109
DriI	GACNNNNNGTC	1 cut(s)	647
Eam1104I	CTCTTC	2 cut(s)	64, 587
Eam1105I	GACNNNNNGTC	1 cut(s)	647
EarI	CTCTTC	2 cut(s)	64, 587
Eco32I	GATATC	1 cut(s)	686
Eco47I	GGWCC	2 cut(s)	379, 641
Eco47III	AGCGCT	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	603
Eco81I	CCTNAGG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	570
EcoRV	GATATC	1 cut(s)	686
FaiI	YATR	8 cut(s)	66, 92, 147, 149, 318, 478, 546, 698
FalI	AAGNNNNNCTT	3 cut(s)	672, 704, 700
FaqI	GGGAC	1 cut(s)	365
Fnu4HI	GCNGC	6 cut(s)	15, 87, 345, 348, 579, 693
FokI	GGATG	1 cut(s)	658
Fsp4HI	GCNGC	6 cut(s)	15, 87, 345, 348, 579, 693
FspBI	CTAG	2 cut(s)	234, 341
GlaI	GCGC	1 cut(s)	542
GluI	GCNGC	6 cut(s)	15, 87, 345, 348, 579, 693
HaeII	RGCGCY	1 cut(s)	544
HapII	CCGG	2 cut(s)	549, 676
HhaI	GCGC	1 cut(s)	543
Hin6I	GCGC	1 cut(s)	541
HinP1I	GCGC	1 cut(s)	541
HinfI	GANTC	2 cut(s)	401, 431
HpaII	CCGG	2 cut(s)	549, 676
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	1 cut(s)	625
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	2 cut(s)	133, 518
Hpy8I	GTNNAC	1 cut(s)	625
Hpy99I	CGWCG	1 cut(s)	417
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	7 cut(s)	28, 51, 160, 332, 350, 491, 704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 290, 299, 353, 584, 701
HpyF3I	CTNAG	2 cut(s)	126, 519
HpySE526I	ACGT	1 cut(s)	415
HspAI	GCGC	1 cut(s)	541
KflI	GGGWCCC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	230, 551
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	4 cut(s)	331, 334, 565, 679
LweI	GCATC	2 cut(s)	478, 713
MaeI	CTAG	2 cut(s)	234, 341
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	5 cut(s)	211, 432, 441, 557, 649
MalI	GATC	2 cut(s)	232, 553
MboI	GATC	2 cut(s)	230, 551
MboII	GAAGA	2 cut(s)	51, 604
MflI	RGATCY	2 cut(s)	230, 551
MluCI	AATT	3 cut(s)	103, 261, 360
MluI	ACGCGT	1 cut(s)	436
MlyI	GAGTC	2 cut(s)	410, 440
MmeI	TCCRAC	1 cut(s)	645
MnlI	CCTC	6 cut(s)	67, 259, 514, 517, 640, 669
MseI	TTAA	2 cut(s)	108, 264
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	2 cut(s)	549, 676
MspR9I	CCNGG	2 cut(s)	572, 676
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	6 cut(s)	11, 290, 299, 353, 584, 701
NciI	CCSGG	1 cut(s)	676
NdeII	GATC	2 cut(s)	230, 551
NlaIV	GGNNCC	4 cut(s)	85, 380, 381, 553
NmuCI	GTSAC	2 cut(s)	432, 649
PaeR7I	CTCGAG	1 cut(s)	133
PaqCI	CACCTGC	1 cut(s)	341
PctI	GAATGC	1 cut(s)	284
PflMI	CCANNNNNTGG	1 cut(s)	561
PfoI	TCCNGGA	2 cut(s)	570, 674
PkrI	GCNGC	6 cut(s)	16, 88, 346, 349, 580, 694
PleI	GAGTC	2 cut(s)	409, 439
PpsI	GAGTC	2 cut(s)	409, 439
PpuMI	RGGWCCY	1 cut(s)	379
PshBI	ATTAAT	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	4 cut(s)	85, 380, 381, 553
PspPI	GGNCC	2 cut(s)	379, 641
PspPPI	RGGWCCY	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	2 cut(s)	356, 561
PsuI	RGATCY	2 cut(s)	230, 551
SaqAI	TTAA	2 cut(s)	108, 264
SatI	GCNGC	6 cut(s)	15, 87, 345, 348, 579, 693
Sau3AI	GATC	2 cut(s)	230, 551
Sau96I	GGNCC	2 cut(s)	379, 641
SchI	GAGTC	2 cut(s)	410, 440
ScrFI	CCNGG	2 cut(s)	572, 676
SfaNI	GCATC	2 cut(s)	478, 713
SfcI	CTRYAG	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	133
SinI	GGWCC	2 cut(s)	379, 641
SlaI	CTCGAG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	3 cut(s)	103, 261, 360
SsiI	CCGC	2 cut(s)	87, 172
SspMI	CTAG	2 cut(s)	234, 341
StyD4I	CCNGG	2 cut(s)	570, 674
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	1 cut(s)	134
TasI	AATT	3 cut(s)	103, 261, 360
TauI	GCSGC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	108, 264
Tru9I	TTAA	2 cut(s)	108, 264
TseFI	GTSAC	2 cut(s)	432, 649
TseI	GCWGC	5 cut(s)	14, 344, 347, 578, 692
Tsp45I	GTSAC	2 cut(s)	432, 649
TspDTI	ATGAA	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	561
VpaK11BI	GGWCC	2 cut(s)	379, 641
VspI	ATTAAT	1 cut(s)	264
XapI	RAATTY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	133
XspI	CTAG	2 cut(s)	234, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.