Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043089.1

Orthogroup ID

OG0001646

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1952

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043089.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

aacaataaagttcttagcttttttgtttttctgctcttcacattggcgctttctagtgcaaaaagattccatttagtgaagatggcaactactgctgcttccagtctgcaaatggcaacagcaagaccctgcatttcctcttctcatagagttttcaggtctggtgccgctatcctgcacggcaatgttaaagtggtatcatcgtctaagctctcgagtgcttgccatatatcatctgtgcaatctttccagcggagctttacatcatcatctttgaaaatggataagtttgttacaaaggcaatggctggatctagtgagaacaagccctcggggttgccaattaatctgaaaggtaagagagcattcattgctggtgtagctgatgataatggatatgggtgggctattgcaaaatctctagctgctgcaggtgctgaaattctcgtgggaacttgggtccctgctttgaacatttttgagtccagcctgcgacgtgggaagtttgatgaatcacgcgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005835 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016631 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

174

Amino Acids

18.56

Weight (kDa)

10.52

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05990 AT2G05990
fragaria_vesca	FvH4_3g44170 FvH4_3g44170 FvH4_6g22440 FvH4_6g22440 FvH4_6g22440 FvH4_6g22440
malus_domestica	MD03G1016800.v1.1 MD11G1017400.v1.1 MD12G1059500.v1.1 MD14G1058600.v1.1
prunus_persica	Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.7G076200_v2.0.a1 Prupe.7G076200_v2.0.a1
pyrus_communis	pycom03g01440 pycom11g01230 pycom12g05150 pycom14g04740
rosa_chinensis	RchiOBHm_Chr3g0479801 RchiOBHm_Chr5g0080511
rosa_laevigata	RLG00000023535 RLG00000036862
rosa_multiflora	Rmu_sc0004329.1_g000006 Rmu_sc0007249.1_g000002 Rmu_sc0037164.1_g000001 Rmu_sc0043089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002900 Rroxscaffold_6G00401960
rosa_rugosa	Rorug03G0179000 Rorug03G0179000 Rorug05G0469300
rosa_samantha	Rh3AG229300 Rh3BG262500 Rh3CG259400 Rh3DG255600 Rh5AG523100 Rh5BG544800 Rh5CG568200 Rh5DG555100
rosa_wichuraiana	Rw0G002250 Rw0G015280 Rw0G019220 Rw0G023190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	1 cut(s)	519
AciI	CCGC	2 cut(s)	168, 253
AclWI	GGATC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	441
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	2 cut(s)	277, 472
AjiI	CACGTC	1 cut(s)	497
AluBI	AGCT	5 cut(s)	18, 211, 258, 383, 425
AluI	AGCT	5 cut(s)	18, 211, 258, 383, 425
AlwI	GGATC	1 cut(s)	319
AlwNI	CAGNNNCTG	1 cut(s)	437
Ama87I	CYCGRG	2 cut(s)	214, 331
ApeKI	GCWGC	3 cut(s)	95, 425, 428
ApoI	RAATTY	1 cut(s)	441
AseI	ATTAAT	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	460
AvaI	CYCGRG	2 cut(s)	214, 331
AvaII	GGWCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	446
BbvI	GCAGC	3 cut(s)	82, 412, 415
BccI	CCATC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	196
BfaI	CTAG	3 cut(s)	54, 315, 422
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	422
BisI	GCNGC	4 cut(s)	96, 168, 426, 429
BlsI	GCNGC	4 cut(s)	97, 169, 427, 430
Bme18I	GGWCC	1 cut(s)	460
BmeT110I	CYCGRG	2 cut(s)	214, 331
BmgBI	CACGTC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	3 cut(s)	166, 461, 462
BsaJI	CCNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	102
Bse3DI	GCAATG	3 cut(s)	190, 309, 369
BseDI	CCNNGG	1 cut(s)	330
BseMI	GCAATG	3 cut(s)	190, 309, 369
BseNI	ACTGG	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	82, 412, 415
BsgI	GTGCAG	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	519
BshNI	GGYRCC	1 cut(s)	164
BsiHKCI	CYCGRG	2 cut(s)	214, 331
BslFI	GGGAC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	365
BsoBI	CYCGRG	2 cut(s)	214, 331
Bsp143I	GATC	1 cut(s)	311
BspACI	CCGC	2 cut(s)	168, 253
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	166, 461, 462
BspMAI	CTGCAG	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	422
BspPI	GGATC	1 cut(s)	319
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	3 cut(s)	190, 309, 369
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	1 cut(s)	311
BssSI	CACGAG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	446
Bst6I	CTCTTC	2 cut(s)	41, 145
BstAPI	GCANNNNNTGC	2 cut(s)	92, 371
BstC8I	GCNNGC	2 cut(s)	223, 491
BstDEI	CTNAG	2 cut(s)	14, 207
BstFNI	CGCG	1 cut(s)	519
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 371, 380, 434
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	82, 412, 415
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BtrI	CACGTC	1 cut(s)	497
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	223, 491
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	460
CviJI	RGCY	9 cut(s)	18, 211, 258, 308, 328, 383, 407, 425, 489
CviKI_1	RGCY	9 cut(s)	18, 211, 258, 308, 328, 383, 407, 425, 489
DdeI	CTNAG	2 cut(s)	14, 207
DpnI	GATC	1 cut(s)	313
DpnII	GATC	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	41, 145
EarI	CTCTTC	2 cut(s)	41, 145
Eco47I	GGWCC	1 cut(s)	460
Eco88I	CYCGRG	2 cut(s)	214, 331
EcoO109I	RGGNCCY	1 cut(s)	460
FaiI	YATR	4 cut(s)	147, 228, 230, 399
FaqI	GGGAC	1 cut(s)	446
Fnu4HI	GCNGC	4 cut(s)	96, 168, 426, 429
Fsp4HI	GCNGC	4 cut(s)	96, 168, 426, 429
FspBI	CTAG	3 cut(s)	54, 315, 422
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	4 cut(s)	96, 168, 426, 429
HaeII	RGCGCY	1 cut(s)	50
HhaI	GCGC	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	3 cut(s)	66, 482, 512
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	498
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	7 cut(s)	59, 109, 132, 178, 241, 413, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 371, 380, 434
HpyF3I	CTNAG	2 cut(s)	14, 207
HpySE526I	ACGT	1 cut(s)	496
HspAI	GCGC	1 cut(s)	47
KflI	GGGWCCC	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	311
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	3 cut(s)	82, 412, 415
MaeI	CTAG	3 cut(s)	54, 315, 422
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	313
MboI	GATC	1 cut(s)	311
MboII	GAAGA	3 cut(s)	28, 91, 132
MflI	RGATCY	1 cut(s)	311
MluCI	AATT	2 cut(s)	342, 441
MluI	ACGCGT	1 cut(s)	517
MlyI	GAGTC	1 cut(s)	491
MnlI	CCTC	2 cut(s)	148, 340
MseI	TTAA	2 cut(s)	189, 345
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	253
Mva1269I	GAATGC	1 cut(s)	365
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	4 cut(s)	92, 371, 380, 434
NdeII	GATC	1 cut(s)	311
NlaIV	GGNNCC	3 cut(s)	166, 461, 462
PaeR7I	CTCGAG	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	41
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	66, 512
PkrI	GCNGC	4 cut(s)	97, 169, 427, 430
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	460
PspN4I	GGNNCC	3 cut(s)	166, 461, 462
PspPI	GGNCC	1 cut(s)	460
PspPPI	RGGWCCY	1 cut(s)	460
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	189, 345
SatI	GCNGC	4 cut(s)	96, 168, 426, 429
Sau3AI	GATC	1 cut(s)	311
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	491
SetI	ASST	9 cut(s)	20, 161, 213, 260, 358, 385, 427, 436, 499
SfcI	CTRYAG	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	214
SinI	GGWCC	1 cut(s)	460
SlaI	CTCGAG	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	342, 441
SsiI	CCGC	2 cut(s)	168, 253
SspMI	CTAG	3 cut(s)	54, 315, 422
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	215
TasI	AATT	2 cut(s)	342, 441
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	66, 512
Tru1I	TTAA	2 cut(s)	189, 345
Tru9I	TTAA	2 cut(s)	189, 345
TseI	GCWGC	3 cut(s)	95, 425, 428
TspDTI	ATGAA	2 cut(s)	358, 525
VpaK11BI	GGWCC	1 cut(s)	460
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	1 cut(s)	441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	214
XspI	CTAG	3 cut(s)	54, 315, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.