Rroxscaffold_1G00002900

Enoyl- acyl-carrier-protein reductase NADH , chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
3424551 .. 3428686
4136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002900.1

Sequence Viewer

Length: 1176 bp
ATGGCAACTACTGCTGCTTCCAGCCTGCAAATGGCAACAGCAAGACCCTGCATTTCCTCTTCTCATAGAGTTTTCAGGTCTGGTGCCGCTATGCTTCACAGCAATGTTAAAGTGGTATCATCGTCTAAGCTCTCGAGTGCGTGCCATATATCATCTGTGCAATCTTTCCAGCGGAGCTTTACATCATCATCTTTGAAAATGGATAAGTTTGTTACAAAGGCAATGGCTGGATCTAGTGAGAACAAGCCCTCTGGGTTGCCAATTAATCTGAAAGGTAAGAGAGCATTCATTGCTGGTGTAGCTGATGATAATGGATATGGGTGGGCTATTGCAAAATCTCTAGCTGCTGCAGGTGCTGAAATTCTCGTGGGAACTTGGGTCCCTGCTTTGAACATTTTTGAGTCCAGCCTGCGACGTGGGAAGTTTGATGAGTCACGCGTGTTACCAGATGGTTCTTTGATGGAGATTACTAAAGTATATCCCCTTGATGCAGTTTTTGATACCCTTGACGATGTTCCTGAGGAGGTGAAATCAAATAAGCGCTATGCCGGATCCAGTAACTGGACTGTCCAGGAAGCTGCTGAAGCCGTGAAGAGTGATTTTGGAAGTATTGATATTCTTGTTCACTCCCTTGCTAATGGACCAGAGGTCACTAAACCTCTGTTGGAGACATCCCGGAAGGGATATCTTGCTGCTATCTCTGCATCAAGTTATTCGTATGTTTCTTTACTGAAGCATTTCCTGCCAATAATTAATCCAGGTGGTTCTTCACTTTCTCTTACATACATTGCTTCTGAGAGGATAATTCCTGGATACGGTGGAGGTATGAGCTCTGCAAAAGCTGCGCTTGAGAGTGACACTCGGGTGCTTGCCTTTGAAGCGGGCAGAAAAAAGAGAATTCGGGTCAACACAATATCTGCTGGTCCGCTAAGAAGCCGTGCTGCCAAAGCAATTGGATTCATTGATATGATGATTGACTATTCGCTAGTCAATGCACCTCTGCAAAAAGAACTATCTGCAGAGGAGGTAGGGAACACAGCCGCTTTCTTGGCATCACCTTTGGCTTCTGCCATCACCGGTTCTGTTATATACGTTGATAATGGCTTGAACACAATGGGTGTCGGAGTTGACAGTCCACTTTTTGAGAAACTTGACATTCCCAAGGATCAGCACTGA

Protein Analysis

391

Amino Acids

41.45

Weight (kDa)

8.99

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 189 - 370 7.9e-50 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 189 - 317 4.6e-08 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 561
AccII CGCG 1 cut(s) 438
AciI CCGC 5 cut(s) 87, 172, 881, 926, 1041
AclWI GGATC 4 cut(s) 238, 546, 559, 1173
AcsI RAATTY 2 cut(s) 360, 897
AcuI CTGAAG 2 cut(s) 603, 752
AfeI AGCGCT 1 cut(s) 542
AfiI CCNNNNNNNGG 3 cut(s) 31, 561, 815
AflIII ACRYGT 1 cut(s) 436
AgeI ACCGGT 1 cut(s) 1076
AgsI TTSAA 4 cut(s) 196, 391, 878, 1108
AhdI GACNNNNNGTC 1 cut(s) 647
AjiI CACGTC 1 cut(s) 416
AjnI CCWGG 3 cut(s) 570, 757, 808
AleI CACNNNNGTG 1 cut(s) 863
AluBI AGCT 7 cut(s) 130, 177, 302, 344, 578, 831, 842
AluI AGCT 7 cut(s) 130, 177, 302, 344, 578, 831, 842
Alw21I GWGCWC 1 cut(s) 833
Alw26I GTCTC 1 cut(s) 662
AlwI GGATC 4 cut(s) 238, 546, 559, 1173
AlwNI CAGNNNCTG 2 cut(s) 356, 561
Ama87I CYCGRG 2 cut(s) 133, 861
Aor51HI AGCGCT 1 cut(s) 542
ApeKI GCWGC 7 cut(s) 14, 344, 347, 578, 692, 842, 941
ApoI RAATTY 2 cut(s) 360, 897
AseI ATTAAT 2 cut(s) 264, 753
AsiGI ACCGGT 1 cut(s) 1076
Asp700I GAANNNNTTC 1 cut(s) 737
AspLEI GCGC 2 cut(s) 543, 847
AspS9I GGNCC 3 cut(s) 379, 641, 923
AsuC2I CCSGG 1 cut(s) 676
AsuHPI GGTGA 3 cut(s) 538, 1047, 1066
AvaI CYCGRG 2 cut(s) 133, 861
AvaII GGWCC 3 cut(s) 379, 641, 923
AxyI CCTNAGG 1 cut(s) 519
BamHI GGATCC 1 cut(s) 551
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 833
BauI CACGAG 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 833
BbvI GCAGC 6 cut(s) 331, 334, 565, 679, 829, 928
BccI CCATC 3 cut(s) 443, 454, 1079
BceAI ACGGC 2 cut(s) 572, 921
BciT130I CCWGG 3 cut(s) 572, 759, 810
BciVI GTATCC 1 cut(s) 806
BcnI CCSGG 1 cut(s) 676
BcoDI GTCTC 1 cut(s) 662
BfaI CTAG 3 cut(s) 234, 341, 986
BfmI CTRYAG 2 cut(s) 348, 1017
BfoI RGCGCY 1 cut(s) 544
BfuAI ACCTGC 1 cut(s) 341
BfuI GTATCC 1 cut(s) 806
BisI GCNGC 9 cut(s) 15, 87, 345, 348, 579, 693, 843, 942, 1041
BlsI GCNGC 9 cut(s) 16, 88, 346, 349, 580, 694, 844, 943, 1042
Bme1390I CCNGG 4 cut(s) 572, 676, 759, 810
Bme18I GGWCC 3 cut(s) 379, 641, 923
BmeRI GACNNNNNGTC 1 cut(s) 647
BmeT110I CYCGRG 2 cut(s) 133, 861
BmgBI CACGTC 1 cut(s) 416
BmgT120I GGNCC 3 cut(s) 379, 641, 923
BmiI GGNNCC 4 cut(s) 85, 380, 381, 553
BmrFI CCNGG 4 cut(s) 572, 676, 759, 810
BmsI GCATC 3 cut(s) 478, 713, 1061
BplI GAGNNNNNCTC 2 cut(s) 844, 876
BpuEI CTTGAG 1 cut(s) 869
BpuMI CCSGG 1 cut(s) 676
BsaJI CCNNGG 1 cut(s) 1161
BsaWI WCCGGW 1 cut(s) 1076
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 561, 815
Bse118I RCCGGY 1 cut(s) 1076
Bse1I ACTGG 2 cut(s) 555, 566
Bse21I CCTNAGG 1 cut(s) 519
Bse3DI GCAATG 4 cut(s) 109, 228, 288, 786
BseBI CCWGG 3 cut(s) 572, 759, 810
BseDI CCNNGG 1 cut(s) 1161
BseGI GGATG 1 cut(s) 671
BseLI CCNNNNNNNGG 3 cut(s) 31, 561, 815
BseMI GCAATG 4 cut(s) 109, 228, 288, 786
BseMII CTCAG 2 cut(s) 510, 786
BseNI ACTGG 2 cut(s) 555, 566
BseRI GAGGAG 2 cut(s) 536, 1037
BseXI GCAGC 6 cut(s) 331, 334, 565, 679, 829, 928
Bsh1236I CGCG 1 cut(s) 438
BshNI GGYRCC 1 cut(s) 83
BshTI ACCGGT 1 cut(s) 1076
BsiHKAI GWGCWC 1 cut(s) 833
BsiHKCI CYCGRG 2 cut(s) 133, 861
BsiSI CCGG 3 cut(s) 549, 676, 1077
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 3 cut(s) 31, 561, 815
BsmAI GTCTC 1 cut(s) 662
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 284
BsoBI CYCGRG 2 cut(s) 133, 861
Bsp1286I GDGCHC 1 cut(s) 833
Bsp143I GATC 3 cut(s) 230, 551, 1165
BspACI CCGC 5 cut(s) 87, 172, 881, 926, 1041
BspCNI CTCAG 2 cut(s) 511, 787
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 4 cut(s) 85, 380, 381, 553
BspMAI CTGCAG 2 cut(s) 352, 1021
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 4 cut(s) 238, 546, 559, 1173
BspT107I GGYRCC 1 cut(s) 83
BsrDI GCAATG 4 cut(s) 109, 228, 288, 786
BsrFI RCCGGY 1 cut(s) 1076
BsrI ACTGG 2 cut(s) 555, 566
BssAI RCCGGY 1 cut(s) 1076
BssECI CCNNGG 1 cut(s) 1161
BssMI GATC 3 cut(s) 230, 551, 1165
BssSI CACGAG 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 1161
Bst2BI CACGAG 1 cut(s) 365
Bst2UI CCWGG 3 cut(s) 572, 759, 810
Bst4CI ACNGT 3 cut(s) 568, 818, 1133
Bst6I CTCTTC 2 cut(s) 64, 587
BstAPI GCANNNNNTGC 4 cut(s) 11, 290, 742, 842
BstC8I GCNNGC 5 cut(s) 26, 142, 410, 870, 883
BstDEI CTNAG 4 cut(s) 126, 519, 795, 929
BstF5I GGATG 1 cut(s) 671
BstFNI CGCG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 2 cut(s) 543, 847
BstKTI GATC 3 cut(s) 233, 554, 1168
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 3 cut(s) 230, 551, 1165
BstNI CCWGG 3 cut(s) 572, 759, 810
BstSCI CCNGG 4 cut(s) 570, 674, 757, 808
BstSFI CTRYAG 2 cut(s) 348, 1017
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 6 cut(s) 331, 334, 565, 679, 829, 928
BstX2I RGATCY 2 cut(s) 230, 551
BstYI RGATCY 2 cut(s) 230, 551
Bsu36I CCTNAGG 1 cut(s) 519
BsuI GTATCC 1 cut(s) 806
BtrI CACGTC 1 cut(s) 416
BtsCI GGATG 1 cut(s) 671
BtsIMutI CAGTG 1 cut(s) 1171
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 5 cut(s) 26, 142, 410, 870, 883
CaiI CAGNNNCTG 2 cut(s) 356, 561
CfoI GCGC 2 cut(s) 543, 847
Cfr10I RCCGGY 1 cut(s) 1076
Cfr13I GGNCC 3 cut(s) 379, 641, 923
CspAI ACCGGT 1 cut(s) 1076
DdeI CTNAG 4 cut(s) 126, 519, 795, 929
DpnI GATC 3 cut(s) 232, 553, 1167
DpnII GATC 3 cut(s) 230, 551, 1165
DriI GACNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 2 cut(s) 64, 587
Eam1105I GACNNNNNGTC 1 cut(s) 647
EarI CTCTTC 2 cut(s) 64, 587
Ecl136II GAGCTC 1 cut(s) 831
Eco130I CCWWGG 1 cut(s) 1161
Eco24I GRGCYC 1 cut(s) 833
Eco32I GATATC 1 cut(s) 686
Eco47I GGWCC 3 cut(s) 379, 641, 923
Eco47III AGCGCT 1 cut(s) 542
Eco53kI GAGCTC 1 cut(s) 831
Eco57I CTGAAG 2 cut(s) 603, 752
Eco81I CCTNAGG 1 cut(s) 519
Eco88I CYCGRG 2 cut(s) 133, 861
EcoICRI GAGCTC 1 cut(s) 831
EcoO109I RGGNCCY 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 897
EcoRII CCWGG 3 cut(s) 570, 757, 808
EcoRV GATATC 1 cut(s) 686
EcoT14I CCWWGG 1 cut(s) 1161
EcoT38I GRGCYC 1 cut(s) 833
ErhI CCWWGG 1 cut(s) 1161
FalI AAGNNNNNCTT 2 cut(s) 831, 863
FaqI GGGAC 1 cut(s) 365
FauI CCCGC 1 cut(s) 874
Fnu4HI GCNGC 9 cut(s) 15, 87, 345, 348, 579, 693, 843, 942, 1041
FokI GGATG 1 cut(s) 658
FriOI GRGCYC 1 cut(s) 833
Fsp4HI GCNGC 9 cut(s) 15, 87, 345, 348, 579, 693, 843, 942, 1041
FspBI CTAG 3 cut(s) 234, 341, 986
GlaI GCGC 2 cut(s) 542, 846
GluI GCNGC 9 cut(s) 15, 87, 345, 348, 579, 693, 843, 942, 1041
HaeII RGCGCY 1 cut(s) 544
HapII CCGG 3 cut(s) 549, 676, 1077
HhaI GCGC 2 cut(s) 543, 847
Hin6I GCGC 2 cut(s) 541, 845
HinP1I GCGC 2 cut(s) 541, 845
HincII GTYRAC 2 cut(s) 907, 1129
HindII GTYRAC 2 cut(s) 907, 1129
HinfI GANTC 3 cut(s) 401, 431, 957
HpaII CCGG 3 cut(s) 549, 676, 1077
HphI GGTGA 3 cut(s) 538, 1047, 1066
Hpy166II GTNNAC 4 cut(s) 625, 907, 1129, 1136
Hpy188I TCNGA 3 cut(s) 270, 796, 1124
Hpy188III TCNNGA 2 cut(s) 133, 518
Hpy8I GTNNAC 4 cut(s) 625, 907, 1129, 1136
Hpy99I CGWCG 1 cut(s) 417
HpyAV CCTTC 1 cut(s) 673
HpyCH4III ACNGT 3 cut(s) 568, 818, 1133
HpyCH4IV ACGT 2 cut(s) 415, 1092
HpyF3I CTNAG 4 cut(s) 126, 519, 795, 929
HpySE526I ACGT 2 cut(s) 415, 1092
HspAI GCGC 2 cut(s) 541, 845
KflI GGGWCCC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 230, 551, 1165
LmnI GCTCC 1 cut(s) 174
Lsp1109I GCAGC 6 cut(s) 331, 334, 565, 679, 829, 928
LweI GCATC 3 cut(s) 478, 713, 1061
MaeI CTAG 3 cut(s) 234, 341, 986
MaeII ACGT 2 cut(s) 415, 1092
MaeIII GTNAC 6 cut(s) 211, 432, 441, 557, 649, 854
MalI GATC 3 cut(s) 232, 553, 1167
MboI GATC 3 cut(s) 230, 551, 1165
MboII GAAGA 3 cut(s) 51, 604, 759
MfeI CAATTG 1 cut(s) 951
MflI RGATCY 2 cut(s) 230, 551
MhlI GDGCHC 1 cut(s) 833
MluCI AATT 6 cut(s) 261, 360, 750, 804, 897, 951
MluI ACGCGT 1 cut(s) 436
MlyI GAGTC 2 cut(s) 410, 440
MmeI TCCRAC 2 cut(s) 645, 1102
MroXI GAANNNNTTC 1 cut(s) 737
MseI TTAA 3 cut(s) 108, 264, 753
MslI CAYNNNNRTG 3 cut(s) 102, 863, 965
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 3 cut(s) 549, 676, 1077
MspR9I CCNGG 4 cut(s) 572, 676, 759, 810
MunI CAATTG 1 cut(s) 951
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 3 cut(s) 572, 759, 810
MvnI CGCG 1 cut(s) 438
NciI CCSGG 1 cut(s) 676
NdeII GATC 3 cut(s) 230, 551, 1165
NlaIV GGNNCC 4 cut(s) 85, 380, 381, 553
NmuCI GTSAC 3 cut(s) 432, 649, 854
OliI CACNNNNGTG 1 cut(s) 863
PaeR7I CTCGAG 1 cut(s) 133
PaqCI CACCTGC 1 cut(s) 341
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 737
PfeI GAWTC 1 cut(s) 957
PflMI CCANNNNNTGG 1 cut(s) 561
PfoI TCCNGGA 3 cut(s) 570, 674, 808
PinAI ACCGGT 1 cut(s) 1076
PkrI GCNGC 9 cut(s) 16, 88, 346, 349, 580, 694, 844, 943, 1042
PleI GAGTC 2 cut(s) 409, 439
PpsI GAGTC 2 cut(s) 409, 439
PpuMI RGGWCCY 1 cut(s) 379
PshBI ATTAAT 2 cut(s) 264, 753
Psp124BI GAGCTC 1 cut(s) 833
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 3 cut(s) 570, 757, 808
PspGI CCWGG 3 cut(s) 570, 757, 808
PspN4I GGNNCC 4 cut(s) 85, 380, 381, 553
PspPI GGNCC 3 cut(s) 379, 641, 923
PspPPI RGGWCCY 1 cut(s) 379
PstI CTGCAG 2 cut(s) 352, 1021
PstNI CAGNNNCTG 2 cut(s) 356, 561
PsuI RGATCY 2 cut(s) 230, 551
RseI CAYNNNNRTG 3 cut(s) 102, 863, 965
SacI GAGCTC 1 cut(s) 833
SaqAI TTAA 3 cut(s) 108, 264, 753
SatI GCNGC 9 cut(s) 15, 87, 345, 348, 579, 693, 843, 942, 1041
Sau3AI GATC 3 cut(s) 230, 551, 1165
Sau96I GGNCC 3 cut(s) 379, 641, 923
SchI GAGTC 2 cut(s) 410, 440
ScrFI CCNGG 4 cut(s) 572, 676, 759, 810
SduI GDGCHC 1 cut(s) 833
SfaNI GCATC 3 cut(s) 478, 713, 1061
SfcI CTRYAG 2 cut(s) 348, 1017
Sfr274I CTCGAG 1 cut(s) 133
SinI GGWCC 3 cut(s) 379, 641, 923
SlaI CTCGAG 1 cut(s) 133
SmiMI CAYNNNNRTG 3 cut(s) 102, 863, 965
SmlI CTYRAG 2 cut(s) 133, 848
SmoI CTYRAG 2 cut(s) 133, 848
Sse9I AATT 6 cut(s) 261, 360, 750, 804, 897, 951
SsiI CCGC 5 cut(s) 87, 172, 881, 926, 1041
SspMI CTAG 3 cut(s) 234, 341, 986
SstI GAGCTC 1 cut(s) 833
StyD4I CCNGG 4 cut(s) 570, 674, 757, 808
StyI CCWWGG 1 cut(s) 1161
TaaI ACNGT 3 cut(s) 568, 818, 1133
TaiI ACGT 2 cut(s) 418, 1095
TaqI TCGA 1 cut(s) 134
TasI AATT 6 cut(s) 261, 360, 750, 804, 897, 951
TauI GCSGC 2 cut(s) 89, 1043
TfiI GAWTC 1 cut(s) 957
Tru1I TTAA 3 cut(s) 108, 264, 753
Tru9I TTAA 3 cut(s) 108, 264, 753
TseFI GTSAC 3 cut(s) 432, 649, 854
TseI GCWGC 7 cut(s) 14, 344, 347, 578, 692, 842, 941
Tsp45I GTSAC 3 cut(s) 432, 649, 854
TspDTI ATGAA 2 cut(s) 277, 949
Van91I CCANNNNNTGG 1 cut(s) 561
VpaK11BI GGWCC 3 cut(s) 379, 641, 923
VspI ATTAAT 2 cut(s) 264, 753
XapI RAATTY 2 cut(s) 360, 897
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 737
XspI CTAG 3 cut(s) 234, 341, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.