Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001646

Physical Location & Seq

Genomic Coordinates Reverse (-)

89767565 .. 89771677

Gene Structure 4113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG523100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCAACTACTGCTGCTTCCAGCCTGCAAATGGCAACAGCAAGACCCTGCATTTCCTCTTCTCATAGAGTTTTCAGGTCTGGTGCTGCTATGCTTCACGGCAATGTTAAAGTGGTGTCATCGTCTAAGCTCTCGAGTGCGTGCCATATATCATCTGTGCAATCTTTCCAGCGGAGCTTTACATCATCGTCTTTGAAAATGGATAAGTTTGTTACAAAGGCAATGGCTGGATCTAGTGAGAACAAGCCCTCTGGGTTGCCAATTAATCTGAAAGGTAAGAGAGCATTCATCGCTGGTGTAGCTGATGATAATGGATATGGGTGGGCTATTGCAAAATCTCTAGCTGCTGCAGGTGCTGAAATTCTCGTGGGAACTTGGGTCCCTGCTTTGAACATTTTTGAGTCCAGCCTGCGACGTGGGAAGTTTGATGAGTCACGCGTGTTACCAGATGGTTCTTTGATGGAGATTACTAAAGTATATCCCCTTGATGCAGTTTTTGATACCCTTGACGATGTTCCTGAGGAGGTGAAATCAAATAAGCGCTATGCTGGATCCAGTAACTGGACTGTCCAGGAAGCTGCTGAAGCCGTGAAGAGTGATTTTGGAAGTATTGATATTCTTGTTCACTCCCTTGCTAATGGACCAGAGGTCACTAAACCTCTGTTGGAGACATCCCGGAAGGGATATCTTGCTGCTATCTCTGCATCAAGTTATTCGTATGTTTCTTTACTGAAGCATTTCCTCCCAATAATTAATCCAGGTGGTTCTTCACTTTCTCTTACATACATTGCTTCTGAGAGGATAATTCCTGGATACGGTGGAGGTATGAGCTCTGCAAAAGCTGCGCTTGAGAGTGACACTCGGGTGCTTGCTTTTGAAGCGGGCAGAAAAAAGAGAATTCGGGTCAACACAATATCTGCTGGTACTGTGTACACCTATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005835 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016631 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

314

Amino Acids

33.43

Weight (kDa)

9.42

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	189 - 312	1e-30	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	189 - 312	2.8e-08	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05990 AT2G05990
fragaria_vesca	FvH4_3g44170 FvH4_3g44170 FvH4_6g22440 FvH4_6g22440 FvH4_6g22440 FvH4_6g22440
malus_domestica	MD03G1016800.v1.1 MD11G1017400.v1.1 MD12G1059500.v1.1 MD14G1058600.v1.1
prunus_persica	Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.6G015200_v2.0.a1 Prupe.7G076200_v2.0.a1 Prupe.7G076200_v2.0.a1
pyrus_communis	pycom03g01440 pycom11g01230 pycom12g05150 pycom14g04740
rosa_chinensis	RchiOBHm_Chr3g0479801 RchiOBHm_Chr5g0080511
rosa_laevigata	RLG00000023535 RLG00000036862
rosa_multiflora	Rmu_sc0004329.1_g000006 Rmu_sc0007249.1_g000002 Rmu_sc0037164.1_g000001 Rmu_sc0043089.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002900 Rroxscaffold_6G00401960
rosa_rugosa	Rorug03G0179000 Rorug03G0179000 Rorug05G0469300
rosa_samantha	Rh3AG229300 Rh3BG262500 Rh3CG259400 Rh3DG255600 Rh5AG523100 Rh5BG544800 Rh5CG568200 Rh5DG555100
rosa_wichuraiana	Rw0G002250 Rw0G015280 Rw0G019220 Rw0G023190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	561
AccII	CGCG	1 cut(s)	438
AciI	CCGC	2 cut(s)	172, 881
AclWI	GGATC	3 cut(s)	238, 546, 559
AcsI	RAATTY	2 cut(s)	360, 897
AcuI	CTGAAG	2 cut(s)	603, 752
AfaI	GTAC	2 cut(s)	925, 932
AfeI	AGCGCT	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	31, 561, 815
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	196, 391, 878
AhdI	GACNNNNNGTC	1 cut(s)	647
AjiI	CACGTC	1 cut(s)	416
AjnI	CCWGG	3 cut(s)	570, 757, 808
AleI	CACNNNNGTG	1 cut(s)	863
AluBI	AGCT	7 cut(s)	130, 177, 302, 344, 578, 831, 842
AluI	AGCT	7 cut(s)	130, 177, 302, 344, 578, 831, 842
Alw21I	GWGCWC	1 cut(s)	833
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	3 cut(s)	238, 546, 559
AlwNI	CAGNNNCTG	2 cut(s)	356, 561
Ama87I	CYCGRG	2 cut(s)	133, 861
Aor51HI	AGCGCT	1 cut(s)	542
ApeKI	GCWGC	7 cut(s)	14, 86, 344, 347, 578, 692, 842
ApoI	RAATTY	2 cut(s)	360, 897
AseI	ATTAAT	2 cut(s)	264, 753
Asp700I	GAANNNNTTC	1 cut(s)	737
AspLEI	GCGC	2 cut(s)	543, 847
AspS9I	GGNCC	2 cut(s)	379, 641
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	1 cut(s)	538
AvaI	CYCGRG	2 cut(s)	133, 861
AvaII	GGWCC	2 cut(s)	379, 641
AxyI	CCTNAGG	1 cut(s)	519
BamHI	GGATCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	833
BauI	CACGAG	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	833
BbvI	GCAGC	6 cut(s)	73, 331, 334, 565, 679, 829
BccI	CCATC	2 cut(s)	443, 454
BceAI	ACGGC	2 cut(s)	115, 572
BciT130I	CCWGG	3 cut(s)	572, 759, 810
BciVI	GTATCC	1 cut(s)	806
BcnI	CCSGG	1 cut(s)	676
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	2 cut(s)	234, 341
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	544
BfuAI	ACCTGC	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	806
BisI	GCNGC	7 cut(s)	15, 87, 345, 348, 579, 693, 843
BlsI	GCNGC	7 cut(s)	16, 88, 346, 349, 580, 694, 844
Bme1390I	CCNGG	4 cut(s)	572, 676, 759, 810
Bme18I	GGWCC	2 cut(s)	379, 641
BmeRI	GACNNNNNGTC	1 cut(s)	647
BmeT110I	CYCGRG	2 cut(s)	133, 861
BmgBI	CACGTC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	379, 641
BmiI	GGNNCC	3 cut(s)	380, 381, 553
BmrFI	CCNGG	4 cut(s)	572, 676, 759, 810
BmsI	GCATC	2 cut(s)	478, 713
BplI	GAGNNNNNCTC	2 cut(s)	844, 876
BpuEI	CTTGAG	1 cut(s)	869
BpuMI	CCSGG	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 561, 815
Bse1I	ACTGG	2 cut(s)	555, 566
Bse21I	CCTNAGG	1 cut(s)	519
Bse3DI	GCAATG	3 cut(s)	109, 228, 786
BseBI	CCWGG	3 cut(s)	572, 759, 810
BseGI	GGATG	1 cut(s)	671
BseLI	CCNNNNNNNGG	3 cut(s)	31, 561, 815
BseMI	GCAATG	3 cut(s)	109, 228, 786
BseMII	CTCAG	2 cut(s)	510, 786
BseNI	ACTGG	2 cut(s)	555, 566
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	6 cut(s)	73, 331, 334, 565, 679, 829
Bsh1236I	CGCG	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	833
BsiHKCI	CYCGRG	2 cut(s)	133, 861
BsiSI	CCGG	1 cut(s)	676
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	3 cut(s)	31, 561, 815
BsmAI	GTCTC	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	284
BsoBI	CYCGRG	2 cut(s)	133, 861
Bsp1286I	GDGCHC	1 cut(s)	833
Bsp1407I	TGTACA	1 cut(s)	930
Bsp143I	GATC	2 cut(s)	230, 551
BspACI	CCGC	2 cut(s)	172, 881
BspCNI	CTCAG	2 cut(s)	511, 787
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	3 cut(s)	380, 381, 553
BspMAI	CTGCAG	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	3 cut(s)	238, 546, 559
BsrDI	GCAATG	3 cut(s)	109, 228, 786
BsrGI	TGTACA	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	555, 566
BssMI	GATC	2 cut(s)	230, 551
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	3 cut(s)	572, 759, 810
Bst4CI	ACNGT	3 cut(s)	568, 818, 928
Bst6I	CTCTTC	2 cut(s)	64, 587
BstAPI	GCANNNNNTGC	2 cut(s)	11, 842
BstAUI	TGTACA	1 cut(s)	930
BstC8I	GCNNGC	5 cut(s)	26, 142, 410, 870, 883
BstDEI	CTNAG	3 cut(s)	126, 519, 795
BstF5I	GGATG	1 cut(s)	671
BstFNI	CGCG	1 cut(s)	438
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	2 cut(s)	543, 847
BstKTI	GATC	2 cut(s)	233, 554
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	2 cut(s)	230, 551
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 290, 299, 353, 584, 701, 842, 878
BstNI	CCWGG	3 cut(s)	572, 759, 810
BstSCI	CCNGG	4 cut(s)	570, 674, 757, 808
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	6 cut(s)	73, 331, 334, 565, 679, 829
BstX2I	RGATCY	2 cut(s)	230, 551
BstYI	RGATCY	2 cut(s)	230, 551
Bsu36I	CCTNAGG	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	806
BtgZI	GCGATG	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	671
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	5 cut(s)	26, 142, 410, 870, 883
CaiI	CAGNNNCTG	2 cut(s)	356, 561
CfoI	GCGC	2 cut(s)	543, 847
Cfr13I	GGNCC	2 cut(s)	379, 641
Csp6I	GTAC	2 cut(s)	924, 931
CviQI	GTAC	2 cut(s)	924, 931
DdeI	CTNAG	3 cut(s)	126, 519, 795
DpnI	GATC	2 cut(s)	232, 553
DpnII	GATC	2 cut(s)	230, 551
DriI	GACNNNNNGTC	1 cut(s)	647
Eam1104I	CTCTTC	2 cut(s)	64, 587
Eam1105I	GACNNNNNGTC	1 cut(s)	647
EarI	CTCTTC	2 cut(s)	64, 587
Ecl136II	GAGCTC	1 cut(s)	831
Eco24I	GRGCYC	1 cut(s)	833
Eco32I	GATATC	1 cut(s)	686
Eco47I	GGWCC	2 cut(s)	379, 641
Eco47III	AGCGCT	1 cut(s)	542
Eco53kI	GAGCTC	1 cut(s)	831
Eco57I	CTGAAG	2 cut(s)	603, 752
Eco81I	CCTNAGG	1 cut(s)	519
Eco88I	CYCGRG	2 cut(s)	133, 861
EcoICRI	GAGCTC	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	897
EcoRII	CCWGG	3 cut(s)	570, 757, 808
EcoRV	GATATC	1 cut(s)	686
EcoT38I	GRGCYC	1 cut(s)	833
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FaqI	GGGAC	1 cut(s)	365
FauI	CCCGC	1 cut(s)	874
Fnu4HI	GCNGC	7 cut(s)	15, 87, 345, 348, 579, 693, 843
FokI	GGATG	1 cut(s)	658
FriOI	GRGCYC	1 cut(s)	833
Fsp4HI	GCNGC	7 cut(s)	15, 87, 345, 348, 579, 693, 843
FspBI	CTAG	2 cut(s)	234, 341
GlaI	GCGC	2 cut(s)	542, 846
GluI	GCNGC	7 cut(s)	15, 87, 345, 348, 579, 693, 843
HaeII	RGCGCY	1 cut(s)	544
HapII	CCGG	1 cut(s)	676
HhaI	GCGC	2 cut(s)	543, 847
Hin6I	GCGC	2 cut(s)	541, 845
HinP1I	GCGC	2 cut(s)	541, 845
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HinfI	GANTC	2 cut(s)	401, 431
HpaII	CCGG	1 cut(s)	676
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	4 cut(s)	625, 907, 931, 933
Hpy188I	TCNGA	2 cut(s)	270, 796
Hpy188III	TCNNGA	2 cut(s)	133, 518
Hpy8I	GTNNAC	4 cut(s)	625, 907, 931, 933
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	1 cut(s)	673
HpyCH4III	ACNGT	3 cut(s)	568, 818, 928
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	8 cut(s)	28, 51, 160, 332, 350, 491, 704, 836
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 290, 299, 353, 584, 701, 842, 878
HpyF3I	CTNAG	3 cut(s)	126, 519, 795
HpySE526I	ACGT	1 cut(s)	415
HspAI	GCGC	2 cut(s)	541, 845
KflI	GGGWCCC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	230, 551
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	6 cut(s)	73, 331, 334, 565, 679, 829
LweI	GCATC	2 cut(s)	478, 713
MaeI	CTAG	2 cut(s)	234, 341
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	6 cut(s)	211, 432, 441, 557, 649, 854
MalI	GATC	2 cut(s)	232, 553
MboI	GATC	2 cut(s)	230, 551
MboII	GAAGA	3 cut(s)	51, 604, 759
MflI	RGATCY	2 cut(s)	230, 551
MhlI	GDGCHC	1 cut(s)	833
MluCI	AATT	5 cut(s)	261, 360, 750, 804, 897
MluI	ACGCGT	1 cut(s)	436
MlyI	GAGTC	2 cut(s)	410, 440
MmeI	TCCRAC	1 cut(s)	645
MnlI	CCTC	9 cut(s)	67, 259, 514, 517, 640, 669, 752, 792, 815
MroXI	GAANNNNTTC	1 cut(s)	737
MseI	TTAA	3 cut(s)	108, 264, 753
MslI	CAYNNNNRTG	2 cut(s)	102, 863
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	1 cut(s)	676
MspR9I	CCNGG	4 cut(s)	572, 676, 759, 810
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	3 cut(s)	572, 759, 810
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	8 cut(s)	11, 290, 299, 353, 584, 701, 842, 878
NciI	CCSGG	1 cut(s)	676
NdeII	GATC	2 cut(s)	230, 551
NlaIV	GGNNCC	3 cut(s)	380, 381, 553
NmuCI	GTSAC	3 cut(s)	432, 649, 854
OliI	CACNNNNGTG	1 cut(s)	863
PaeR7I	CTCGAG	1 cut(s)	133
PaqCI	CACCTGC	1 cut(s)	341
PctI	GAATGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	737
PflMI	CCANNNNNTGG	1 cut(s)	561
PfoI	TCCNGGA	3 cut(s)	570, 674, 808
PkrI	GCNGC	7 cut(s)	16, 88, 346, 349, 580, 694, 844
PleI	GAGTC	2 cut(s)	409, 439
PpsI	GAGTC	2 cut(s)	409, 439
PpuMI	RGGWCCY	1 cut(s)	379
PshBI	ATTAAT	2 cut(s)	264, 753
Psp124BI	GAGCTC	1 cut(s)	833
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	3 cut(s)	570, 757, 808
PspGI	CCWGG	3 cut(s)	570, 757, 808
PspN4I	GGNNCC	3 cut(s)	380, 381, 553
PspPI	GGNCC	2 cut(s)	379, 641
PspPPI	RGGWCCY	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	2 cut(s)	356, 561
PsuI	RGATCY	2 cut(s)	230, 551
RsaI	GTAC	2 cut(s)	925, 932
RsaNI	GTAC	2 cut(s)	924, 931
RseI	CAYNNNNRTG	2 cut(s)	102, 863
SacI	GAGCTC	1 cut(s)	833
SaqAI	TTAA	3 cut(s)	108, 264, 753
SatI	GCNGC	7 cut(s)	15, 87, 345, 348, 579, 693, 843
Sau3AI	GATC	2 cut(s)	230, 551
Sau96I	GGNCC	2 cut(s)	379, 641
SchI	GAGTC	2 cut(s)	410, 440
ScrFI	CCNGG	4 cut(s)	572, 676, 759, 810
SduI	GDGCHC	1 cut(s)	833
SfaNI	GCATC	2 cut(s)	478, 713
SfcI	CTRYAG	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	133
SinI	GGWCC	2 cut(s)	379, 641
SlaI	CTCGAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	102, 863
SmlI	CTYRAG	2 cut(s)	133, 848
SmoI	CTYRAG	2 cut(s)	133, 848
Sse9I	AATT	5 cut(s)	261, 360, 750, 804, 897
SsiI	CCGC	2 cut(s)	172, 881
SspMI	CTAG	2 cut(s)	234, 341
SstI	GAGCTC	1 cut(s)	833
StyD4I	CCNGG	4 cut(s)	570, 674, 757, 808
TaaI	ACNGT	3 cut(s)	568, 818, 928
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	1 cut(s)	134
TasI	AATT	5 cut(s)	261, 360, 750, 804, 897
TatI	WGTACW	1 cut(s)	930
Tru1I	TTAA	3 cut(s)	108, 264, 753
Tru9I	TTAA	3 cut(s)	108, 264, 753
TseFI	GTSAC	3 cut(s)	432, 649, 854
TseI	GCWGC	7 cut(s)	14, 86, 344, 347, 578, 692, 842
Tsp45I	GTSAC	3 cut(s)	432, 649, 854
TspDTI	ATGAA	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	561
VpaK11BI	GGWCC	2 cut(s)	379, 641
VspI	ATTAAT	2 cut(s)	264, 753
XapI	RAATTY	2 cut(s)	360, 897
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	737
XspI	CTAG	2 cut(s)	234, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.