Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002663

Physical Location & Seq

Genomic Coordinates Forward (+)

4802783 .. 4804375

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G11890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAAGTCGAAGTCAAGCTCCGTCTCCTAACCGCCGCTGCTCATCTCCGTCTCACCACTCTCCTCACTCCATACCACCTCAAAACCCTTCACCAACGCAACACCTTCTTCGACACACCCAAAAACGACCTCTCTCTCCGCCGCGCCGTCCTCCGTCTCCGCTTCCTTCAAAACGCCGCCGTTTCCGCGGCTTCTCCTTCTCCGCCGCGTTGTATCGTCTCTCTTAAAGCGAAGCCAACTCTAGCTAATGGGATTAGTCGTGTGGAGGAAGATGAAGAGGAGATTGAGTATTGGATTGGTAAAGAATGTGTTGAGTCACCGGCTAAGCTCTCAGATATTGGATCTAGGGTTTTGAAAAGGGTTAAAGAGGAATATGGGTTTAATGACTTTTTAGGGTTTGTTTGTTTAGGTGGCTTTGAGAATGTTAGGAATGTTTATGAGTGGAGAGGTGTTAAACTTGAGGTTGATGAGACTAAGTATGATTTTGGGAATTGTTATGAGATTGAATGTGAGACAGAGGAACCAGAGCGTGTTAAGACAATGATTGAGGAGTTTCTTACAGAGGAGAAGATTGAGTTTTCGAATTCCGACATGACAAAGTTTGCTGTTTTCCGGTCAGGAAAACTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050355 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYTH

Protein Analysis

210

Amino Acids

24.16

Weight (kDa)

5.46

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CYTH	PF01928	2 - 199	6.2e-25	CYTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11890 AT2G11890
fragaria_vesca	FvH4_6g29260 FvH4_7g01830
malus_domestica	MD02G1018700.v1.1 MD15G1162700.v1.1 MD17G1216500.v1.1
prunus_persica	Prupe.3G092500_v2.0.a1 Prupe.7G252100_v2.0.a1
pyrus_communis	pycom15g14630
rosa_chinensis	RchiOBHm_Chr2g0087111 RchiOBHm_Chr2g0134431 RchiOBHm_Chr7g0219721
rosa_multiflora	Rmu_co8243769.1_g000001 Rmu_sc0000902.1_g000016 Rmu_sc0003367.1_g000001 Rmu_sc0005464.1_g000008 Rmu_sc0005571.1_g000033 Rmu_ssc0000239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153790 Rroxscaffold_2G00153870 Rroxscaffold_3G00239900
rosa_rugosa	Rorug01G0472600 Rorug02G0317100 Rorug07G0187000
rosa_samantha	Rh2AG025800 Rh2AG369700 Rh2BG025600 Rh2BG375600 Rh2CG026100 Rh2CG353100 Rh2DG026000 Rh2DG392700 Rh7AG331000 Rh7BG320800 Rh7CG348400 Rh7DG326500
rosa_wichuraiana	Rw2G002060 Rw2G030110 Rw7G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	144, 188, 208
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	583
AgsI	TTSAA	3 cut(s)	170, 355, 506
AluBI	AGCT	3 cut(s)	19, 245, 328
AluI	AGCT	3 cut(s)	19, 245, 328
Alw26I	GTCTC	6 cut(s)	29, 56, 161, 223, 464, 506
AlwI	GGATC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	583
AspLEI	GCGC	1 cut(s)	146
AsuHPI	GGTGA	3 cut(s)	46, 83, 309
AsuII	TTCGAA	1 cut(s)	581
BbvI	GCAGC	1 cut(s)	25
BceAI	ACGGC	2 cut(s)	131, 164
BcoDI	GTCTC	6 cut(s)	29, 56, 161, 223, 464, 506
BfaI	CTAG	2 cut(s)	242, 345
BisI	GCNGC	6 cut(s)	36, 39, 142, 177, 189, 206
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	6 cut(s)	37, 40, 143, 178, 190, 207
BmiI	GGNNCC	1 cut(s)	522
Bpu1102I	GCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	612
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bse118I	RCCGGY	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	345
BseRI	GAGGAG	4 cut(s)	53, 293, 563, 578
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	3 cut(s)	144, 188, 208
BsiSI	CCGG	2 cut(s)	320, 613
BsmAI	GTCTC	6 cut(s)	29, 56, 161, 223, 464, 506
BsmBI	CGTCTC	4 cut(s)	29, 56, 161, 223
Bsp119I	TTCGAA	1 cut(s)	581
Bsp143I	GATC	1 cut(s)	341
Bsp1720I	GCTNAGC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	344
BspFNI	CGCG	3 cut(s)	144, 188, 208
BspLI	GGNNCC	1 cut(s)	522
BspPI	GGATC	1 cut(s)	349
BspT104I	TTCGAA	1 cut(s)	581
BsrFI	RCCGGY	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	581
BstDEI	CTNAG	3 cut(s)	324, 331, 474
BstDSI	CCRYGG	1 cut(s)	186
BstFNI	CGCG	3 cut(s)	144, 188, 208
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	6 cut(s)	29, 56, 161, 223, 464, 506
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstUI	CGCG	3 cut(s)	144, 188, 208
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	186
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	319
Cfr42I	CCGCGG	1 cut(s)	189
CviAII	CATG	1 cut(s)	592
CviJI	RGCY	7 cut(s)	19, 191, 235, 245, 323, 328, 414
CviKI_1	RGCY	7 cut(s)	19, 191, 235, 245, 323, 328, 414
DdeI	CTNAG	3 cut(s)	324, 331, 474
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	2 cut(s)	128, 192
EcoRI	GAATTC	1 cut(s)	583
Esp3I	CGTCTC	4 cut(s)	29, 56, 161, 223
FaeI	CATG	1 cut(s)	595
FaiI	YATR	6 cut(s)	73, 375, 438, 480, 498, 593
FatI	CATG	1 cut(s)	591
Fnu4HI	GCNGC	6 cut(s)	36, 39, 142, 177, 189, 206
Fsp4HI	GCNGC	6 cut(s)	36, 39, 142, 177, 189, 206
FspBI	CTAG	2 cut(s)	242, 345
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	6 cut(s)	36, 39, 142, 177, 189, 206
HapII	CCGG	2 cut(s)	320, 613
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	595
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	2 cut(s)	320, 613
HphI	GGTGA	3 cut(s)	46, 83, 309
Hpy188I	TCNGA	2 cut(s)	334, 589
Hpy188III	TCNNGA	1 cut(s)	618
HpyAV	CCTTC	4 cut(s)	98, 115, 176, 207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	3 cut(s)	324, 331, 474
Hsp92II	CATG	1 cut(s)	595
HspAI	GCGC	1 cut(s)	144
KspI	CCGCGG	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	341
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	4 cut(s)	333, 537, 603, 626
Lsp1109I	GCAGC	1 cut(s)	25
MaeI	CTAG	2 cut(s)	242, 345
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	4 cut(s)	100, 281, 287, 580
MflI	RGATCY	1 cut(s)	341
MluCI	AATT	2 cut(s)	490, 583
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	612
MseI	TTAA	5 cut(s)	225, 363, 381, 453, 534
MspA1I	CMGCKG	2 cut(s)	38, 188
MspI	CCGG	2 cut(s)	320, 613
MvnI	CGCG	3 cut(s)	144, 188, 208
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	1 cut(s)	595
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	315
NspV	TTCGAA	1 cut(s)	581
PkrI	GCNGC	6 cut(s)	37, 40, 143, 178, 190, 207
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	341
SacII	CCGCGG	1 cut(s)	189
SaqAI	TTAA	5 cut(s)	225, 363, 381, 453, 534
SatI	GCNGC	6 cut(s)	36, 39, 142, 177, 189, 206
Sau3AI	GATC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	323
SetI	ASST	9 cut(s)	21, 81, 107, 132, 247, 330, 412, 451, 465
Sfr303I	CCGCGG	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	581
SgrBI	CCGCGG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	490, 583
SspMI	CTAG	2 cut(s)	242, 345
TaqI	TCGA	3 cut(s)	9, 111, 581
TasI	AATT	2 cut(s)	490, 583
TauI	GCSGC	5 cut(s)	38, 144, 179, 191, 208
Tru1I	TTAA	5 cut(s)	225, 363, 381, 453, 534
Tru9I	TTAA	5 cut(s)	225, 363, 381, 453, 534
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	315
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	3 cut(s)	11, 38, 143
XapI	RAATTY	1 cut(s)	583
XspI	CTAG	2 cut(s)	242, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.