Rh2DG026000

Triphosphate tunel metalloenzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002663
Physical Location & Seq
Reverse (-)
1563878 .. 1565010
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG026000.1

Sequence Viewer

Length: 621 bp
ATGTCTCACATCTCCAAAGCCCTAATGGAGGTCGAGGTCAAGCTGCGGCTGCCGGACGCCGCCGCCCACGGCCAGGTCACCGCTCTTCTAGCGCCTTTCCACCTCGGCACCCACCGCCAGGAGAATCTCTTCTTCGACGGCGCCAAGTCCGAGCTCTCGGCGCGCCGGGCCGTGCTCCGGCTCCGCTTCTCCGACCGGAGCCCTCTCTGCGCCGTGACGCTGAAGGCGAAGGCGGTGCTGGTCGACGGCGTGAGCCGGGTGGAGGAGGACGAGGAGGAGATGGACCCGGCGGTGGGGCGGGCGTGCGCCGCCGAGCCGGAGAAGATGATGGCGGCGGAGTCTAGGGTTTTGAGGAGGGTGAGGGAGGAGTTTGGGGTTTTAGGGTTTGTGGGGATGGGAGGGTTTGGGAATGTGAGGGATGTGTATGATTGGAAAGGGTTGAAATTGGAGGTGGATGAGACTAAGTATGAGTTTGGGACTTGTTATGAGATTGAGTGTGAGAGCGCTGATCCTGATGGGGCTAAGGAGAAGCTTGAGGAGTTCTTGAAGGAAAATAGGGTGAGGTATTCGTATTCTGAAGTGTCCAAGTTTGCGACTTTTCGAGCTGGGAAGCTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYTH

Protein Analysis

206

Amino Acids

23.05

Weight (kDa)

5.56

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYTH PF01928 9 - 198 3.5e-20 CYTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 107, 140
AccBSI CCGCTC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 243
AccII CGCG 1 cut(s) 163
AclWI GGATC 1 cut(s) 503
AcoI YGGCCR 1 cut(s) 70
AcuI CTGAAG 2 cut(s) 242, 597
AcyI GRCGYC 2 cut(s) 57, 141
AfeI AGCGCT 1 cut(s) 505
AfiI CCNNNNNNNGG 7 cut(s) 28, 73, 118, 177, 262, 292, 293
AgsI TTSAA 2 cut(s) 442, 547
AjnI CCWGG 2 cut(s) 72, 117
AluBI AGCT 5 cut(s) 43, 154, 532, 605, 613
AluI AGCT 5 cut(s) 43, 154, 532, 605, 613
Alw21I GWGCWC 2 cut(s) 156, 177
Alw26I GTCTC 2 cut(s) 9, 452
AlwI GGATC 1 cut(s) 503
Aor51HI AGCGCT 1 cut(s) 505
AoxI GGCC 2 cut(s) 70, 168
ApeKI GCWGC 3 cut(s) 43, 49, 613
AscI GGCGCGCC 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 7 cut(s) 94, 143, 163, 165, 212, 308, 506
AspS9I GGNCC 2 cut(s) 168, 283
AsuC2I CCSGG 3 cut(s) 167, 257, 287
AsuHPI GGTGA 3 cut(s) 70, 370, 571
AvaII GGWCC 1 cut(s) 283
BanI GGYRCC 2 cut(s) 107, 140
BanII GRGCYC 2 cut(s) 156, 203
Bbv12I GWGCWC 2 cut(s) 156, 177
BbvI GCAGC 3 cut(s) 30, 36, 600
BccI CCATC 4 cut(s) 274, 322, 388, 509
BceAI ACGGC 5 cut(s) 85, 154, 155, 197, 262
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 2 cut(s) 74, 119
BcnI CCSGG 3 cut(s) 167, 257, 287
BcoDI GTCTC 2 cut(s) 9, 452
BfaI CTAG 2 cut(s) 89, 342
BfoI RGCGCY 3 cut(s) 95, 144, 507
BisI GCNGC 8 cut(s) 44, 47, 50, 60, 63, 309, 333, 614
BlsI GCNGC 8 cut(s) 45, 48, 51, 61, 64, 310, 334, 615
Bme1390I CCNGG 5 cut(s) 74, 119, 167, 257, 287
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 168, 283
BmiI GGNNCC 5 cut(s) 109, 142, 182, 200, 285
BmrFI CCNGG 5 cut(s) 74, 119, 167, 257, 287
Bpu10I CCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 3 cut(s) 167, 257, 287
BsaHI GRCGYC 2 cut(s) 57, 141
BsaJI CCNNGG 2 cut(s) 67, 103
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 7 cut(s) 28, 73, 118, 177, 262, 292, 293
BseBI CCWGG 2 cut(s) 74, 119
BseDI CCNNGG 2 cut(s) 67, 103
BseGI GGATG 3 cut(s) 399, 424, 460
BseLI CCNNNNNNNGG 7 cut(s) 28, 73, 118, 177, 262, 292, 293
BsePI GCGCGC 1 cut(s) 161
BseRI GAGGAG 6 cut(s) 278, 287, 290, 367, 380, 551
BseXI GCAGC 3 cut(s) 30, 36, 600
BseYI CCCAGC 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 2 cut(s) 72, 170
BshNI GGYRCC 2 cut(s) 107, 140
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 2 cut(s) 156, 177
BsiSI CCGG 7 cut(s) 53, 166, 178, 196, 256, 287, 317
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 7 cut(s) 28, 73, 118, 177, 262, 292, 293
BsmAI GTCTC 2 cut(s) 9, 452
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 2 cut(s) 72, 170
Bsp1286I GDGCHC 3 cut(s) 156, 177, 203
Bsp143I GATC 1 cut(s) 508
BspANI GGCC 2 cut(s) 72, 170
BspFNI CGCG 1 cut(s) 163
BspLI GGNNCC 5 cut(s) 109, 142, 182, 200, 285
BspPI GGATC 1 cut(s) 503
BspQI GCTCTTC 1 cut(s) 90
BspT107I GGYRCC 2 cut(s) 107, 140
BsrBI CCGCTC 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 67, 103
BssHII GCGCGC 1 cut(s) 161
BssMI GATC 1 cut(s) 508
BssNI GRCGYC 2 cut(s) 57, 141
Bst2UI CCWGG 2 cut(s) 74, 119
Bst6I CTCTTC 2 cut(s) 90, 134
BstACI GRCGYC 2 cut(s) 57, 141
BstC8I GCNNGC 3 cut(s) 163, 300, 304
BstDEI CTNAG 3 cut(s) 462, 522, 618
BstDSI CCRYGG 1 cut(s) 67
BstEII GGTNACC 1 cut(s) 76
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 3 cut(s) 399, 424, 460
BstFNI CGCG 1 cut(s) 163
BstH2I RGCGCY 3 cut(s) 95, 144, 507
BstHHI GCGC 7 cut(s) 94, 143, 163, 165, 212, 308, 506
BstKTI GATC 1 cut(s) 511
BstMAI GTCTC 2 cut(s) 9, 452
BstMBI GATC 1 cut(s) 508
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 7 cut(s) 49, 89, 114, 160, 167, 207, 308
BstNI CCWGG 2 cut(s) 74, 119
BstPI GGTNACC 1 cut(s) 76
BstSCI CCNGG 5 cut(s) 72, 117, 165, 255, 285
BstUI CGCG 1 cut(s) 163
BstV1I GCAGC 3 cut(s) 30, 36, 600
BsuRI GGCC 2 cut(s) 72, 170
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 3 cut(s) 399, 424, 460
Cac8I GCNNGC 3 cut(s) 163, 300, 304
CfoI GCGC 7 cut(s) 94, 143, 163, 165, 212, 308, 506
Cfr13I GGNCC 2 cut(s) 168, 283
CseI GACGC 2 cut(s) 65, 226
DdeI CTNAG 3 cut(s) 462, 522, 618
DinI GGCGCC 1 cut(s) 142
DpnI GATC 1 cut(s) 510
DpnII GATC 1 cut(s) 508
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 90, 134
EarI CTCTTC 2 cut(s) 90, 134
EciI GGCGGA 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 2 cut(s) 156, 203
Eco47I GGWCC 1 cut(s) 283
Eco47III AGCGCT 1 cut(s) 505
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 242, 597
Eco91I GGTNACC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 72, 117
EcoT38I GRGCYC 2 cut(s) 156, 203
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
FaiI YATR 3 cut(s) 426, 468, 486
FaqI GGGAC 1 cut(s) 490
FauI CCCGC 1 cut(s) 291
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 8 cut(s) 44, 47, 50, 60, 63, 309, 333, 614
FokI GGATG 3 cut(s) 406, 431, 467
FriOI GRGCYC 2 cut(s) 156, 203
Fsp4HI GCNGC 8 cut(s) 44, 47, 50, 60, 63, 309, 333, 614
FspBI CTAG 2 cut(s) 89, 342
GlaI GCGC 7 cut(s) 93, 142, 162, 164, 211, 307, 505
GluI GCNGC 8 cut(s) 44, 47, 50, 60, 63, 309, 333, 614
GsaI CCCAGC 1 cut(s) 609
HaeII RGCGCY 3 cut(s) 95, 144, 507
HaeIII GGCC 2 cut(s) 72, 170
HapII CCGG 7 cut(s) 53, 166, 178, 196, 256, 287, 317
HgaI GACGC 2 cut(s) 65, 226
HhaI GCGC 7 cut(s) 94, 143, 163, 165, 212, 308, 506
Hin1I GRCGYC 2 cut(s) 57, 141
Hin6I GCGC 7 cut(s) 92, 141, 161, 163, 210, 306, 504
HinP1I GCGC 7 cut(s) 92, 141, 161, 163, 210, 306, 504
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 2 cut(s) 124, 338
HpaII CCGG 7 cut(s) 53, 166, 178, 196, 256, 287, 317
HphI GGTGA 3 cut(s) 70, 370, 571
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 151, 193, 577
Hpy188III TCNNGA 2 cut(s) 512, 544
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 2 cut(s) 140, 248
HpyAV CCTTC 3 cut(s) 217, 223, 541
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 89, 114, 160, 167, 207, 308
HpyF3I CTNAG 3 cut(s) 462, 522, 618
Hsp92I GRCGYC 2 cut(s) 57, 141
HspAI GCGC 7 cut(s) 92, 141, 161, 163, 210, 306, 504
KasI GGCGCC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 508
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 3 cut(s) 180, 186, 198
Lsp1109I GCAGC 3 cut(s) 30, 36, 600
MaeI CTAG 2 cut(s) 89, 342
MaeIII GTNAC 2 cut(s) 76, 214
MalI GATC 1 cut(s) 510
MbiI CCGCTC 1 cut(s) 83
MboI GATC 1 cut(s) 508
MboII GAAGA 4 cut(s) 77, 121, 124, 334
MhlI GDGCHC 3 cut(s) 156, 177, 203
MluCI AATT 1 cut(s) 443
Mly113I GGCGCC 1 cut(s) 141
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 128
MspI CCGG 7 cut(s) 53, 166, 178, 196, 256, 287, 317
MspR9I CCNGG 5 cut(s) 74, 119, 167, 257, 287
MvaI CCWGG 2 cut(s) 74, 119
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 7 cut(s) 49, 89, 114, 160, 167, 207, 308
NarI GGCGCC 1 cut(s) 141
NciI CCSGG 3 cut(s) 167, 257, 287
NdeII GATC 1 cut(s) 508
NlaIV GGNNCC 5 cut(s) 109, 142, 182, 200, 285
NmeAIII GCCGAG 3 cut(s) 84, 137, 337
NmuCI GTSAC 2 cut(s) 76, 214
PalAI GGCGCGCC 1 cut(s) 161
PauI GCGCGC 1 cut(s) 161
PciSI GCTCTTC 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 8 cut(s) 45, 48, 51, 61, 64, 310, 334, 615
PleI GAGTC 1 cut(s) 346
PluTI GGCGCC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 72, 117
PspEI GGTNACC 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 2 cut(s) 72, 117
PspN4I GGNNCC 5 cut(s) 109, 142, 182, 200, 285
PspPI GGNCC 2 cut(s) 168, 283
PteI GCGCGC 1 cut(s) 161
SacI GAGCTC 1 cut(s) 156
SalI GTCGAC 1 cut(s) 242
SapI GCTCTTC 1 cut(s) 90
SatI GCNGC 8 cut(s) 44, 47, 50, 60, 63, 309, 333, 614
Sau3AI GATC 1 cut(s) 508
Sau96I GGNCC 2 cut(s) 168, 283
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 5 cut(s) 74, 119, 167, 257, 287
SduI GDGCHC 3 cut(s) 156, 177, 203
SfoI GGCGCC 1 cut(s) 142
SgsI GGCGCGCC 1 cut(s) 161
SinI GGWCC 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 1 cut(s) 443
SspDI GGCGCC 1 cut(s) 140
SspMI CTAG 2 cut(s) 89, 342
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 5 cut(s) 72, 117, 165, 255, 285
TaqI TCGA 4 cut(s) 33, 135, 243, 601
TasI AATT 1 cut(s) 443
TauI GCSGC 5 cut(s) 49, 62, 65, 311, 335
TfiI GAWTC 1 cut(s) 124
TseFI GTSAC 2 cut(s) 76, 214
TseI GCWGC 3 cut(s) 43, 49, 613
Tsp45I GTSAC 2 cut(s) 76, 214
VpaK11BI GGWCC 1 cut(s) 283
XagI CCTNNNNNAGG 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 89, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.