Rh2CG026100

Triphosphate tunel metalloenzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002663
Physical Location & Seq
Reverse (-)
2011668 .. 2012264
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG026100.1

Sequence Viewer

Length: 597 bp
ATGGAGGTCGAGGTCAAGCTGCGGCTGCCGGACGCCGCCGCCCACGGCCAGGCCACCGCTCTTCTAGCGCCGTTCCACCTCGGCACCCACCGCCAGGAGAATCTCTTCTTCGACGGCTCCAAGTCCGAGCTCTCGGCGCGCCGGGCCGTGCTCCGGCTCCGGTTCTCCGACCGGAGCCCTCTCTGCGCCGTGACGCTGAAGGCGAAGGCGGTGCTGGTCGACGGCGTGAGCCGGGTGGAGGAGGACGAGGAGGAGATGGACCCGGCGGTGGGGCGGGCGTGCGCCGCCGAGCCGGAGAAGATGATGGCGGCGGAGTCTAGGGTTTTGAGGAGGGTGAGGGAGGAGTTTGGGGTTTTAGGGTTTGTGGGGATGGGAGGGTTTGGGAATGTGAGGGATGTGTATGATTGGAAAGGGTTGAAATTGGAGGTGGATGAGACTAAGTATGAGTTTGGGACTTGTTATGAGATTGAGTGTGAGAGCGCTGATCCTGATGGGGCTAAGGAGAAGCTTGAGGAGTTCTTGAAGGAAAATGGGGTGAGGTATTCGTATTCTGAAGTGTCCAAGTTTGCGACTTTTCGAGCTGGGAAGCTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYTH

Protein Analysis

198

Amino Acids

22.07

Weight (kDa)

5.21

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYTH PF01928 2 - 189 1.3e-19 CYTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccBSI CCGCTC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 219
AccII CGCG 1 cut(s) 139
AclWI GGATC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 46
AcuI CTGAAG 2 cut(s) 218, 573
AcyI GRCGYC 1 cut(s) 33
AfeI AGCGCT 1 cut(s) 481
AfiI CCNNNNNNNGG 6 cut(s) 49, 94, 153, 238, 268, 269
AgsI TTSAA 2 cut(s) 418, 523
AjnI CCWGG 2 cut(s) 48, 93
AluBI AGCT 5 cut(s) 19, 130, 508, 581, 589
AluI AGCT 5 cut(s) 19, 130, 508, 581, 589
Alw21I GWGCWC 2 cut(s) 132, 153
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 1 cut(s) 479
Aor51HI AGCGCT 1 cut(s) 481
AoxI GGCC 3 cut(s) 46, 51, 144
ApeKI GCWGC 3 cut(s) 19, 25, 589
AscI GGCGCGCC 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 104
AspLEI GCGC 6 cut(s) 70, 139, 141, 188, 284, 482
AspS9I GGNCC 2 cut(s) 144, 259
AsuC2I CCSGG 3 cut(s) 143, 233, 263
AsuHPI GGTGA 2 cut(s) 346, 547
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 2 cut(s) 132, 179
Bbv12I GWGCWC 2 cut(s) 132, 153
BbvI GCAGC 3 cut(s) 6, 12, 576
BccI CCATC 4 cut(s) 250, 298, 364, 485
BceAI ACGGC 6 cut(s) 55, 61, 130, 131, 173, 238
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 2 cut(s) 50, 95
BcnI CCSGG 3 cut(s) 143, 233, 263
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 2 cut(s) 65, 318
BfoI RGCGCY 2 cut(s) 71, 483
BisI GCNGC 8 cut(s) 20, 23, 26, 36, 39, 285, 309, 590
BlsI GCNGC 8 cut(s) 21, 24, 27, 37, 40, 286, 310, 591
Bme1390I CCNGG 5 cut(s) 50, 95, 143, 233, 263
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 144, 259
BmiI GGNNCC 5 cut(s) 85, 118, 158, 176, 261
BmrFI CCNGG 5 cut(s) 50, 95, 143, 233, 263
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 3 cut(s) 143, 233, 263
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 43, 79
BsaWI WCCGGW 2 cut(s) 159, 171
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 94, 153, 238, 268, 269
BseBI CCWGG 2 cut(s) 50, 95
BseDI CCNNGG 2 cut(s) 43, 79
BseGI GGATG 3 cut(s) 375, 400, 436
BseLI CCNNNNNNNGG 6 cut(s) 49, 94, 153, 238, 268, 269
BsePI GCGCGC 1 cut(s) 137
BseRI GAGGAG 6 cut(s) 254, 263, 266, 343, 356, 527
BseXI GCAGC 3 cut(s) 6, 12, 576
BseYI CCCAGC 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 3 cut(s) 48, 53, 146
BshNI GGYRCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 2 cut(s) 132, 153
BsiSI CCGG 8 cut(s) 29, 142, 154, 160, 172, 232, 263, 293
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 6 cut(s) 49, 94, 153, 238, 268, 269
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 466
BsnI GGCC 3 cut(s) 48, 53, 146
Bsp1286I GDGCHC 3 cut(s) 132, 153, 179
Bsp143I GATC 1 cut(s) 484
BspANI GGCC 3 cut(s) 48, 53, 146
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 5 cut(s) 85, 118, 158, 176, 261
BspPI GGATC 1 cut(s) 479
BspQI GCTCTTC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 43, 79
BssHII GCGCGC 1 cut(s) 137
BssMI GATC 1 cut(s) 484
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 50, 95
Bst6I CTCTTC 2 cut(s) 66, 110
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 3 cut(s) 139, 276, 280
BstDEI CTNAG 3 cut(s) 438, 498, 594
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 3 cut(s) 375, 400, 436
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 2 cut(s) 71, 483
BstHHI GCGC 6 cut(s) 70, 139, 141, 188, 284, 482
BstKTI GATC 1 cut(s) 487
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 1 cut(s) 484
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 7 cut(s) 25, 65, 90, 136, 143, 183, 284
BstNI CCWGG 2 cut(s) 50, 95
BstSCI CCNGG 5 cut(s) 48, 93, 141, 231, 261
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 6, 12, 576
BsuRI GGCC 3 cut(s) 48, 53, 146
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 3 cut(s) 375, 400, 436
Cac8I GCNNGC 3 cut(s) 139, 276, 280
CfoI GCGC 6 cut(s) 70, 139, 141, 188, 284, 482
Cfr13I GGNCC 2 cut(s) 144, 259
CseI GACGC 2 cut(s) 41, 202
DdeI CTNAG 3 cut(s) 438, 498, 594
DpnI GATC 1 cut(s) 486
DpnII GATC 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 66, 110
EarI CTCTTC 2 cut(s) 66, 110
EciI GGCGGA 1 cut(s) 326
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 2 cut(s) 132, 179
Eco47I GGWCC 1 cut(s) 259
Eco47III AGCGCT 1 cut(s) 481
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 2 cut(s) 218, 573
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 48, 93
EcoT38I GRGCYC 2 cut(s) 132, 179
FaiI YATR 3 cut(s) 402, 444, 462
FaqI GGGAC 1 cut(s) 466
FauI CCCGC 1 cut(s) 267
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 8 cut(s) 20, 23, 26, 36, 39, 285, 309, 590
FokI GGATG 3 cut(s) 382, 407, 443
FriOI GRGCYC 2 cut(s) 132, 179
Fsp4HI GCNGC 8 cut(s) 20, 23, 26, 36, 39, 285, 309, 590
FspBI CTAG 2 cut(s) 65, 318
GlaI GCGC 6 cut(s) 69, 138, 140, 187, 283, 481
GluI GCNGC 8 cut(s) 20, 23, 26, 36, 39, 285, 309, 590
GsaI CCCAGC 1 cut(s) 585
HaeII RGCGCY 2 cut(s) 71, 483
HaeIII GGCC 3 cut(s) 48, 53, 146
HapII CCGG 8 cut(s) 29, 142, 154, 160, 172, 232, 263, 293
HgaI GACGC 2 cut(s) 41, 202
HhaI GCGC 6 cut(s) 70, 139, 141, 188, 284, 482
Hin1I GRCGYC 1 cut(s) 33
Hin6I GCGC 6 cut(s) 68, 137, 139, 186, 282, 480
HinP1I GCGC 6 cut(s) 68, 137, 139, 186, 282, 480
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 2 cut(s) 100, 314
HpaII CCGG 8 cut(s) 29, 142, 154, 160, 172, 232, 263, 293
HphI GGTGA 2 cut(s) 346, 547
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 127, 169, 553
Hpy188III TCNNGA 2 cut(s) 488, 520
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 2 cut(s) 116, 224
HpyAV CCTTC 3 cut(s) 193, 199, 517
HpyF10VI GCNNNNNNNGC 7 cut(s) 25, 65, 90, 136, 143, 183, 284
HpyF3I CTNAG 3 cut(s) 438, 498, 594
Hsp92I GRCGYC 1 cut(s) 33
HspAI GCGC 6 cut(s) 68, 137, 139, 186, 282, 480
Kzo9I GATC 1 cut(s) 484
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 4 cut(s) 122, 156, 162, 174
Lsp1109I GCAGC 3 cut(s) 6, 12, 576
MaeI CTAG 2 cut(s) 65, 318
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 486
MbiI CCGCTC 1 cut(s) 59
MboI GATC 1 cut(s) 484
MboII GAAGA 4 cut(s) 53, 97, 100, 310
MhlI GDGCHC 3 cut(s) 132, 153, 179
MluCI AATT 1 cut(s) 419
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 104
MspI CCGG 8 cut(s) 29, 142, 154, 160, 172, 232, 263, 293
MspR9I CCNGG 5 cut(s) 50, 95, 143, 233, 263
MvaI CCWGG 2 cut(s) 50, 95
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 7 cut(s) 25, 65, 90, 136, 143, 183, 284
NciI CCSGG 3 cut(s) 143, 233, 263
NdeII GATC 1 cut(s) 484
NlaIV GGNNCC 5 cut(s) 85, 118, 158, 176, 261
NmeAIII GCCGAG 3 cut(s) 60, 113, 313
NmuCI GTSAC 1 cut(s) 190
PalAI GGCGCGCC 1 cut(s) 137
PauI GCGCGC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 8 cut(s) 21, 24, 27, 37, 40, 286, 310, 591
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 48, 93
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 2 cut(s) 48, 93
PspN4I GGNNCC 5 cut(s) 85, 118, 158, 176, 261
PspPI GGNCC 2 cut(s) 144, 259
PteI GCGCGC 1 cut(s) 137
SacI GAGCTC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 66
SatI GCNGC 8 cut(s) 20, 23, 26, 36, 39, 285, 309, 590
Sau3AI GATC 1 cut(s) 484
Sau96I GGNCC 2 cut(s) 144, 259
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 5 cut(s) 50, 95, 143, 233, 263
SduI GDGCHC 3 cut(s) 132, 153, 179
SgsI GGCGCGCC 1 cut(s) 137
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 1 cut(s) 419
SspMI CTAG 2 cut(s) 65, 318
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 5 cut(s) 48, 93, 141, 231, 261
TaqI TCGA 4 cut(s) 9, 111, 219, 577
TasI AATT 1 cut(s) 419
TauI GCSGC 5 cut(s) 25, 38, 41, 287, 311
TfiI GAWTC 1 cut(s) 100
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 3 cut(s) 19, 25, 589
Tsp45I GTSAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 2 cut(s) 65, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.