Rroxscaffold_3G00239900

Triphosphate tunel metalloenzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002663
Physical Location & Seq
Forward (+)
31151724 .. 31154443
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239900.1

Sequence Viewer

Length: 789 bp
ATGGAGGTCGAGGTCAAGCTGAGGCTGCCGGACGCCGCCGCCCACGGCCAGGTCACTGCTCTTCTAGCGCCATTCCACCTCGGCACCCACCGCCAGGAGAATCTGTTCTTCGACGGCTCGAAATCCGAGCTCTCGGCGCGGCGGGCCGTGCTCCGGCTACGCTTCTCCGACCGGAGCCCTCTCTGCGCCGTGACGCTGAAGGCGAAGGCGGTGCTGGTCGACGGCGTCAGCCGAGTGGAGGAGGACGAGGAGGAGCTGGACCCGGCGGTGGGCCGAGCGTGCGCCGCCGAGCCGGATAAGATGATGGCGGCGGAGTCTAGGGTTTTGAGGAGGGTGAGGGAGGAGTTTGGGGTTCTAGGGTTTGTGGGGATGGGAGGGTTTGGGAATGTGAGGGATGTGTATGATTGGAAAGGGTTGAAATTGGAGGTGGATGAGACCAAGTATGAGTTTGGGACTTGTTATGAGATTGAGTGTGAGAGTGCTGATCCTGATGGAGCCAAGGAGAAGCTTGAGGAGTTCTTGAAGGAAAATGGGGTGGTTCAGGAATTTGTTTTAGGTGGATATGATGCTGAGGCCACTGCTGCATTCAACCAGAATCTCTCTGACATATCTTTGCTTAAAGATCCACGCTCAAAAGAAGCATACCAAAGTGAATCTAATGGCTACTGTCAACCAACAGATTATTCCATGCAGAGAAACCGGTATGGCAGACCATTAATTGTAATGTTCTTCCCAAGGATTACGAGGAAACCTAAGTTGAGGATGAAGAATCTGAAATTCAGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYTH

Protein Analysis

262

Amino Acids

29.55

Weight (kDa)

5.65

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYTH PF01928 2 - 178 8.3e-19 CYTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 219
AccII CGCG 1 cut(s) 139
AclWI GGATC 2 cut(s) 479, 617
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 545, 776
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 2 cut(s) 33, 225
AfiI CCNNNNNNNGG 6 cut(s) 49, 94, 153, 238, 268, 269
AgeI ACCGGT 1 cut(s) 699
AgsI TTSAA 3 cut(s) 418, 523, 589
AjnI CCWGG 2 cut(s) 48, 93
AjuI GAANNNNNNNTTGG 2 cut(s) 667, 699
AloI GAACNNNNNNTCC 2 cut(s) 89, 121
AluBI AGCT 4 cut(s) 19, 130, 256, 508
AluI AGCT 4 cut(s) 19, 130, 256, 508
Alw21I GWGCWC 2 cut(s) 132, 153
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 2 cut(s) 479, 617
AoxI GGCC 4 cut(s) 46, 144, 271, 573
ApeKI GCWGC 2 cut(s) 25, 581
ApoI RAATTY 2 cut(s) 545, 776
AseI ATTAAT 1 cut(s) 716
AsiGI ACCGGT 1 cut(s) 699
Asp700I GAANNNNTTC 1 cut(s) 104
AspLEI GCGC 4 cut(s) 70, 139, 188, 284
AspS9I GGNCC 3 cut(s) 144, 259, 271
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 346
AvaII GGWCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 2 cut(s) 132, 179
Bbv12I GWGCWC 2 cut(s) 132, 153
BbvCI CCTCAGC 2 cut(s) 20, 570
BbvI GCAGC 2 cut(s) 12, 568
BccI CCATC 3 cut(s) 298, 364, 485
BceAI ACGGC 5 cut(s) 61, 130, 131, 173, 238
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 2 cut(s) 50, 95
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 3 cut(s) 65, 318, 356
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 7 cut(s) 26, 36, 39, 140, 285, 309, 582
BlsI GCNGC 7 cut(s) 27, 37, 40, 141, 286, 310, 583
Bme1390I CCNGG 3 cut(s) 50, 95, 263
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 3 cut(s) 144, 259, 271
BmiI GGNNCC 4 cut(s) 85, 176, 261, 496
BmrFI CCNGG 3 cut(s) 50, 95, 263
BmsI GCATC 1 cut(s) 556
Bpu10I CCTNAGC 2 cut(s) 20, 570
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 263
BsaHI GRCGYC 2 cut(s) 33, 225
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 4 cut(s) 43, 79, 498, 734
BsaWI WCCGGW 2 cut(s) 171, 699
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 94, 153, 238, 268, 269
Bse118I RCCGGY 1 cut(s) 699
BseBI CCWGG 2 cut(s) 50, 95
BseDI CCNNGG 4 cut(s) 43, 79, 498, 734
BseGI GGATG 4 cut(s) 375, 400, 436, 768
BseLI CCNNNNNNNGG 6 cut(s) 49, 94, 153, 238, 268, 269
BseMII CTCAG 2 cut(s) 11, 561
BseRI GAGGAG 6 cut(s) 254, 263, 266, 343, 356, 527
BseXI GCAGC 2 cut(s) 12, 568
Bsh1236I CGCG 1 cut(s) 139
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 4 cut(s) 48, 146, 273, 575
BshNI GGYRCC 1 cut(s) 83
BshTI ACCGGT 1 cut(s) 699
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 2 cut(s) 132, 153
BsiSI CCGG 6 cut(s) 29, 154, 172, 263, 293, 700
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 6 cut(s) 49, 94, 153, 238, 268, 269
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 4 cut(s) 48, 146, 273, 575
Bso31I GGTCTC 1 cut(s) 428
Bsp1286I GDGCHC 3 cut(s) 132, 153, 179
Bsp143I GATC 2 cut(s) 484, 622
BspANI GGCC 4 cut(s) 48, 146, 273, 575
BspCNI CTCAG 2 cut(s) 12, 562
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 4 cut(s) 85, 176, 261, 496
BspPI GGATC 2 cut(s) 479, 617
BspQI GCTCTTC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 699
BssAI RCCGGY 1 cut(s) 699
BssECI CCNNGG 4 cut(s) 43, 79, 498, 734
BssMI GATC 2 cut(s) 484, 622
BssNI GRCGYC 2 cut(s) 33, 225
BssT1I CCWWGG 2 cut(s) 498, 734
Bst2UI CCWGG 2 cut(s) 50, 95
Bst4CI ACNGT 1 cut(s) 668
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 2 cut(s) 33, 225
BstC8I GCNNGC 2 cut(s) 144, 280
BstDEI CTNAG 3 cut(s) 20, 570, 753
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 4 cut(s) 375, 400, 436, 768
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 4 cut(s) 70, 139, 188, 284
BstKTI GATC 2 cut(s) 487, 625
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 2 cut(s) 484, 622
BstMCI CGRYCG 1 cut(s) 172
BstNI CCWGG 2 cut(s) 50, 95
BstSCI CCNGG 3 cut(s) 48, 93, 261
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 12, 568
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BsuRI GGCC 4 cut(s) 48, 146, 273, 575
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 4 cut(s) 375, 400, 436, 768
BtsI GCAGTG 2 cut(s) 54, 576
BtsIMutI CAGTG 2 cut(s) 54, 576
Cac8I GCNNGC 2 cut(s) 144, 280
CfoI GCGC 4 cut(s) 70, 139, 188, 284
Cfr10I RCCGGY 1 cut(s) 699
Cfr13I GGNCC 3 cut(s) 144, 259, 271
CseI GACGC 3 cut(s) 41, 202, 214
CspAI ACCGGT 1 cut(s) 699
CviAII CATG 1 cut(s) 688
DdeI CTNAG 3 cut(s) 20, 570, 753
DpnI GATC 2 cut(s) 486, 624
DpnII GATC 2 cut(s) 484, 622
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 1 cut(s) 326
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 498, 734
Eco24I GRGCYC 2 cut(s) 132, 179
Eco31I GGTCTC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 48, 93
EcoT14I CCWWGG 2 cut(s) 498, 734
EcoT38I GRGCYC 2 cut(s) 132, 179
ErhI CCWWGG 2 cut(s) 498, 734
FaeI CATG 1 cut(s) 691
FaiI YATR 8 cut(s) 402, 444, 462, 564, 608, 643, 689, 705
FaqI GGGAC 1 cut(s) 466
FatI CATG 1 cut(s) 687
FauI CCCGC 1 cut(s) 135
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 7 cut(s) 26, 36, 39, 140, 285, 309, 582
FokI GGATG 4 cut(s) 382, 407, 443, 775
FriOI GRGCYC 2 cut(s) 132, 179
Fsp4HI GCNGC 7 cut(s) 26, 36, 39, 140, 285, 309, 582
FspBI CTAG 3 cut(s) 65, 318, 356
GlaI GCGC 4 cut(s) 69, 138, 187, 283
GluI GCNGC 7 cut(s) 26, 36, 39, 140, 285, 309, 582
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 4 cut(s) 48, 146, 273, 575
HapII CCGG 6 cut(s) 29, 154, 172, 263, 293, 700
HgaI GACGC 3 cut(s) 41, 202, 214
HhaI GCGC 4 cut(s) 70, 139, 188, 284
Hin1I GRCGYC 2 cut(s) 33, 225
Hin1II CATG 1 cut(s) 691
Hin6I GCGC 4 cut(s) 68, 137, 186, 282
HinP1I GCGC 4 cut(s) 68, 137, 186, 282
HincII GTYRAC 2 cut(s) 220, 671
HindII GTYRAC 2 cut(s) 220, 671
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 5 cut(s) 100, 314, 595, 653, 769
HpaII CCGG 6 cut(s) 29, 154, 172, 263, 293, 700
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 2 cut(s) 220, 671
Hpy188I TCNGA 4 cut(s) 127, 169, 604, 774
Hpy188III TCNNGA 3 cut(s) 488, 520, 542
Hpy8I GTNNAC 2 cut(s) 220, 671
Hpy99I CGWCG 2 cut(s) 116, 224
HpyAV CCTTC 3 cut(s) 193, 199, 517
HpyCH4III ACNGT 1 cut(s) 668
HpyCH4V TGCA 2 cut(s) 584, 691
HpyF3I CTNAG 3 cut(s) 20, 570, 753
Hsp92I GRCGYC 2 cut(s) 33, 225
Hsp92II CATG 1 cut(s) 691
HspAI GCGC 4 cut(s) 68, 137, 186, 282
Kzo9I GATC 2 cut(s) 484, 622
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 4 cut(s) 156, 174, 253, 494
Lsp1109I GCAGC 2 cut(s) 12, 568
LweI GCATC 1 cut(s) 556
MaeI CTAG 3 cut(s) 65, 318, 356
MaeIII GTNAC 2 cut(s) 52, 190
MalI GATC 2 cut(s) 486, 624
MboI GATC 2 cut(s) 484, 622
MboII GAAGA 4 cut(s) 53, 100, 721, 778
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 3 cut(s) 132, 153, 179
MluCI AATT 4 cut(s) 419, 545, 717, 776
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 2 cut(s) 618, 716
MspI CCGG 6 cut(s) 29, 154, 172, 263, 293, 700
MspR9I CCNGG 3 cut(s) 50, 95, 263
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 2 cut(s) 50, 95
MvnI CGCG 1 cut(s) 139
NciI CCSGG 1 cut(s) 263
NdeII GATC 2 cut(s) 484, 622
NlaIII CATG 1 cut(s) 691
NlaIV GGNNCC 4 cut(s) 85, 176, 261, 496
NmeAIII GCCGAG 5 cut(s) 60, 113, 257, 299, 313
NmuCI GTSAC 2 cut(s) 52, 190
PciSI GCTCTTC 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PctI GAATGC 1 cut(s) 584
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 4 cut(s) 100, 595, 653, 769
PflFI GACNNNGTC 1 cut(s) 224
PinAI ACCGGT 1 cut(s) 699
PkrI GCNGC 7 cut(s) 27, 37, 40, 141, 286, 310, 583
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 716
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 48, 93
PspGI CCWGG 2 cut(s) 48, 93
PspN4I GGNNCC 4 cut(s) 85, 176, 261, 496
PspPI GGNCC 3 cut(s) 144, 259, 271
PsuI RGATCY 1 cut(s) 622
PsyI GACNNNGTC 1 cut(s) 224
SacI GAGCTC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 618, 716
SatI GCNGC 7 cut(s) 26, 36, 39, 140, 285, 309, 582
Sau3AI GATC 2 cut(s) 484, 622
Sau96I GGNCC 3 cut(s) 144, 259, 271
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 50, 95, 263
SduI GDGCHC 3 cut(s) 132, 153, 179
SfaNI GCATC 1 cut(s) 556
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 4 cut(s) 419, 545, 717, 776
SspMI CTAG 3 cut(s) 65, 318, 356
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 48, 93, 261
StyI CCWWGG 2 cut(s) 498, 734
TaaI ACNGT 1 cut(s) 668
TaqI TCGA 4 cut(s) 9, 111, 119, 219
TasI AATT 4 cut(s) 419, 545, 717, 776
TauI GCSGC 5 cut(s) 38, 41, 142, 287, 311
TfiI GAWTC 4 cut(s) 100, 595, 653, 769
Tru1I TTAA 2 cut(s) 618, 716
Tru9I TTAA 2 cut(s) 618, 716
TscAI CASTG 2 cut(s) 61, 583
TseFI GTSAC 2 cut(s) 52, 190
TseI GCWGC 2 cut(s) 25, 581
Tsp45I GTSAC 2 cut(s) 52, 190
TspDTI ATGAA 1 cut(s) 779
TspRI CASTG 2 cut(s) 61, 583
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 259
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 2 cut(s) 545, 776
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 3 cut(s) 65, 318, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.