RchiOBHm_Chr7g0219721

Triphosphate tunel metalloenzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002663
Physical Location & Seq
Reverse (-)
38354512 .. 38357191
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19666

Sequence Viewer

Length: 624 bp
ATGTCTCACCCCATCTCCAAAGCCCTAATGGAGGTCGAGGTCAAGCTGAGGCTGCCGGACGCCGCCGCCCACGGTCAGGTCACCGCTCTTCTAGCGCCGTTCCACCTCGGCACCCACCGCCAGGAGAATCTCTTCTTCGACGGCTCGAAATCCGAGCTCTCGGCGCGGCGGGCCGCGCTCCGGCTACGCTTCTCCGACCGGAGCCCTCTCTGCGCCGTGACGCTGAAGGCGAATGCGGTGCTGGTCGACGGCGTCAGCCGAGTGGAGGAGGACGAGGAGGAGCTGGACCCGGCGGTGGGGCGGGCGTGCGCCGCCGAGCCGGAGAAGATGATGGCGGCGGAGTCTAGGGTTTTGAGGAGGGTGAGGGAGGAGTTTGGGGTTCTAGGGTTTGTGGGGATGGGAGGGTTTGGGAATGTGAGGGATGTGTATGATTGGAAAGGGTTGAAATTGGAGGTGGATGAGACCAAGTATGAGTTTGGGACTTGTTATGAGATTGAGTGTGAGAGTGCTGATCCTGATGGAGCCAAGGAGAAGCTTGAGGAGTTCTTGAAGGAAAATGGGGTGAGGTATTCGTACTCCAAAGTGTCCAAGTTTGCGACTTTTCGAGCTGGGAAGCTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYTH

Protein Analysis

207

Amino Acids

23.01

Weight (kDa)

5.55

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYTH PF01928 10 - 188 3.5e-20 CYTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 246
AccII CGCG 2 cut(s) 166, 176
AclWI GGATC 1 cut(s) 506
AcuI CTGAAG 1 cut(s) 245
AcyI GRCGYC 2 cut(s) 60, 252
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 7 cut(s) 31, 76, 121, 180, 265, 295, 296
AgsI TTSAA 2 cut(s) 445, 550
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 6 cut(s) 46, 157, 283, 535, 608, 616
AluI AGCT 6 cut(s) 46, 157, 283, 535, 608, 616
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 2 cut(s) 9, 455
AlwI GGATC 1 cut(s) 506
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 52, 616
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 5 cut(s) 97, 166, 178, 215, 311
AspS9I GGNCC 2 cut(s) 171, 286
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 3 cut(s) 73, 373, 574
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 2 cut(s) 159, 206
Bbv12I GWGCWC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 39, 603
BccI CCATC 4 cut(s) 20, 325, 391, 512
BceAI ACGGC 4 cut(s) 82, 157, 200, 265
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 1 cut(s) 122
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 9, 455
BfaI CTAG 3 cut(s) 92, 345, 383
BfoI RGCGCY 1 cut(s) 98
BisI GCNGC 8 cut(s) 53, 63, 66, 167, 174, 312, 336, 617
BlsI GCNGC 8 cut(s) 54, 64, 67, 168, 175, 313, 337, 618
Bme1390I CCNGG 2 cut(s) 122, 290
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 171, 286
BmiI GGNNCC 4 cut(s) 112, 203, 288, 523
BmrFI CCNGG 2 cut(s) 122, 290
Bpu10I CCTNAGC 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 290
BsaHI GRCGYC 2 cut(s) 60, 252
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 3 cut(s) 70, 106, 525
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 7 cut(s) 31, 76, 121, 180, 265, 295, 296
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 3 cut(s) 70, 106, 525
BseGI GGATG 3 cut(s) 402, 427, 463
BseLI CCNNNNNNNGG 7 cut(s) 31, 76, 121, 180, 265, 295, 296
BseMII CTCAG 1 cut(s) 38
BseRI GAGGAG 6 cut(s) 281, 290, 293, 370, 383, 554
BseXI GCAGC 2 cut(s) 39, 603
BseYI CCCAGC 1 cut(s) 608
Bsh1236I CGCG 2 cut(s) 166, 176
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 173
BshNI GGYRCC 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 5 cut(s) 56, 181, 199, 290, 320
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 7 cut(s) 31, 76, 121, 180, 265, 295, 296
BsmAI GTCTC 2 cut(s) 9, 455
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 455
Bsp1286I GDGCHC 2 cut(s) 159, 206
Bsp143I GATC 1 cut(s) 511
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 39
BspFNI CGCG 2 cut(s) 166, 176
BspLI GGNNCC 4 cut(s) 112, 203, 288, 523
BspPI GGATC 1 cut(s) 506
BspQI GCTCTTC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 86
BssECI CCNNGG 3 cut(s) 70, 106, 525
BssMI GATC 1 cut(s) 511
BssNI GRCGYC 2 cut(s) 60, 252
BssT1I CCWWGG 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 93, 137
BstACI GRCGYC 2 cut(s) 60, 252
BstC8I GCNNGC 3 cut(s) 171, 303, 307
BstDEI CTNAG 2 cut(s) 47, 621
BstDSI CCRYGG 1 cut(s) 70
BstEII GGTNACC 1 cut(s) 79
BstENI CCTNNNNNAGG 1 cut(s) 29
BstF5I GGATG 3 cut(s) 402, 427, 463
BstFNI CGCG 2 cut(s) 166, 176
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 5 cut(s) 97, 166, 178, 215, 311
BstKTI GATC 1 cut(s) 514
BstMAI GTCTC 2 cut(s) 9, 455
BstMBI GATC 1 cut(s) 511
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 8 cut(s) 52, 92, 117, 163, 170, 175, 210, 311
BstNI CCWGG 1 cut(s) 122
BstPI GGTNACC 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 120, 288
BstUI CGCG 2 cut(s) 166, 176
BstV1I GCAGC 2 cut(s) 39, 603
BsuRI GGCC 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 3 cut(s) 402, 427, 463
Cac8I GCNNGC 3 cut(s) 171, 303, 307
CfoI GCGC 5 cut(s) 97, 166, 178, 215, 311
Cfr13I GGNCC 2 cut(s) 171, 286
CseI GACGC 3 cut(s) 68, 229, 241
Csp6I GTAC 1 cut(s) 574
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 2 cut(s) 47, 621
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
Eam1104I CTCTTC 2 cut(s) 93, 137
EarI CTCTTC 2 cut(s) 93, 137
EciI GGCGGA 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 525
Eco24I GRGCYC 2 cut(s) 159, 206
Eco31I GGTCTC 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 525
EcoT38I GRGCYC 2 cut(s) 159, 206
ErhI CCWWGG 1 cut(s) 525
FaiI YATR 3 cut(s) 429, 471, 489
FaqI GGGAC 1 cut(s) 493
FauI CCCGC 2 cut(s) 162, 294
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 8 cut(s) 53, 63, 66, 167, 174, 312, 336, 617
FokI GGATG 3 cut(s) 409, 434, 470
FriOI GRGCYC 2 cut(s) 159, 206
Fsp4HI GCNGC 8 cut(s) 53, 63, 66, 167, 174, 312, 336, 617
FspBI CTAG 3 cut(s) 92, 345, 383
GlaI GCGC 5 cut(s) 96, 165, 177, 214, 310
GluI GCNGC 8 cut(s) 53, 63, 66, 167, 174, 312, 336, 617
GsaI CCCAGC 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 1 cut(s) 173
HapII CCGG 5 cut(s) 56, 181, 199, 290, 320
HgaI GACGC 3 cut(s) 68, 229, 241
HhaI GCGC 5 cut(s) 97, 166, 178, 215, 311
Hin1I GRCGYC 2 cut(s) 60, 252
Hin6I GCGC 5 cut(s) 95, 164, 176, 213, 309
HinP1I GCGC 5 cut(s) 95, 164, 176, 213, 309
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 2 cut(s) 127, 341
HpaII CCGG 5 cut(s) 56, 181, 199, 290, 320
HphI GGTGA 3 cut(s) 73, 373, 574
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 154, 196
Hpy188III TCNNGA 2 cut(s) 515, 547
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 2 cut(s) 143, 251
HpyAV CCTTC 2 cut(s) 220, 544
HpyCH4III ACNGT 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 8 cut(s) 52, 92, 117, 163, 170, 175, 210, 311
HpyF3I CTNAG 2 cut(s) 47, 621
Hsp92I GRCGYC 2 cut(s) 60, 252
HspAI GCGC 5 cut(s) 95, 164, 176, 213, 309
Kzo9I GATC 1 cut(s) 511
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 4 cut(s) 183, 201, 280, 521
Lsp1109I GCAGC 2 cut(s) 39, 603
MaeI CTAG 3 cut(s) 92, 345, 383
MaeIII GTNAC 2 cut(s) 79, 217
MalI GATC 1 cut(s) 513
MbiI CCGCTC 1 cut(s) 86
MboI GATC 1 cut(s) 511
MboII GAAGA 4 cut(s) 80, 124, 127, 337
MhlI GDGCHC 2 cut(s) 159, 206
MluCI AATT 1 cut(s) 446
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 131
MspI CCGG 5 cut(s) 56, 181, 199, 290, 320
MspR9I CCNGG 2 cut(s) 122, 290
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 166, 176
MwoI GCNNNNNNNGC 8 cut(s) 52, 92, 117, 163, 170, 175, 210, 311
NciI CCSGG 1 cut(s) 290
NdeII GATC 1 cut(s) 511
NlaIV GGNNCC 4 cut(s) 112, 203, 288, 523
NmeAIII GCCGAG 4 cut(s) 87, 140, 284, 340
NmuCI GTSAC 2 cut(s) 79, 217
PciSI GCTCTTC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PctI GAATGC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 127
PflFI GACNNNGTC 1 cut(s) 251
PkrI GCNGC 8 cut(s) 54, 64, 67, 168, 175, 313, 337, 618
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 120
PspEI GGTNACC 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 4 cut(s) 112, 203, 288, 523
PspPI GGNCC 2 cut(s) 171, 286
PsyI GACNNNGTC 1 cut(s) 251
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
SacI GAGCTC 1 cut(s) 159
SalI GTCGAC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 93
SatI GCNGC 8 cut(s) 53, 63, 66, 167, 174, 312, 336, 617
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 2 cut(s) 171, 286
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 122, 290
SduI GDGCHC 2 cut(s) 159, 206
SinI GGWCC 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 1 cut(s) 446
SspMI CTAG 3 cut(s) 92, 345, 383
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 120, 288
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 5 cut(s) 36, 138, 146, 246, 604
TasI AATT 1 cut(s) 446
TauI GCSGC 6 cut(s) 65, 68, 169, 176, 314, 338
TfiI GAWTC 1 cut(s) 127
TseFI GTSAC 2 cut(s) 79, 217
TseI GCWGC 2 cut(s) 52, 616
Tsp45I GTSAC 2 cut(s) 79, 217
Tth111I GACNNNGTC 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 286
XagI CCTNNNNNAGG 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 3 cut(s) 92, 345, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.