Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000239.1

Orthogroup ID

OG0002663

Physical Location & Seq

Genomic Coordinates Reverse (-)

4988 .. 5584

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000239.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggaggtcgaggtcaagctgcggctgccggacgccgccgcccacggccaggtcaccactcttctagcgcctttccacctcggcacccaccgccaggagaatctcttcttcgacggctccaagtccgagctctcggcgcgccgggccgtgctccggctacgcttctccgaccggagccccctctgcgccgtgacgctgaaggcgaaggcggtgctggtcgacggcgtgagccgggtggaggaggacgaggaggagatggacccggcggtggggcgggcgtgcgccgccgagccggagaagatgatggcggcggagtctagggttttgaggagggtgagggaggagtttggggttttagggtttgtggggatgggagggtttgggaatgtgagggacgtgtatgattggaaagggttgaaattggaggtggatgagactaagtatgagtttgggacttgttatgagattgagtgtgagagcgctgatcctgatggggctaaggagaagcttgaggagttcttgaaggaaaatggggtgaggtattcgtattctgaagtgtccaagtttgcgacttttcgagctgggaagctgccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYTH

Protein Analysis

198

Amino Acids

22.13

Weight (kDa)

5.21

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11890 AT2G11890
fragaria_vesca	FvH4_6g29260 FvH4_7g01830
malus_domestica	MD02G1018700.v1.1 MD15G1162700.v1.1 MD17G1216500.v1.1
prunus_persica	Prupe.3G092500_v2.0.a1 Prupe.7G252100_v2.0.a1
pyrus_communis	pycom15g14630
rosa_chinensis	RchiOBHm_Chr2g0087111 RchiOBHm_Chr2g0134431 RchiOBHm_Chr7g0219721
rosa_multiflora	Rmu_co8243769.1_g000001 Rmu_sc0000902.1_g000016 Rmu_sc0003367.1_g000001 Rmu_sc0005464.1_g000008 Rmu_sc0005571.1_g000033 Rmu_ssc0000239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153790 Rroxscaffold_2G00153870 Rroxscaffold_3G00239900
rosa_rugosa	Rorug01G0472600 Rorug02G0317100 Rorug07G0187000
rosa_samantha	Rh2AG025800 Rh2AG369700 Rh2BG025600 Rh2BG375600 Rh2CG026100 Rh2CG353100 Rh2DG026000 Rh2DG392700 Rh7AG331000 Rh7BG320800 Rh7CG348400 Rh7DG326500
rosa_wichuraiana	Rw2G002060 Rw2G030110 Rw7G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	139
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	46
AcuI	CTGAAG	2 cut(s)	218, 573
AcyI	GRCGYC	1 cut(s)	33
AfeI	AGCGCT	1 cut(s)	481
AfiI	CCNNNNNNNGG	6 cut(s)	49, 94, 153, 238, 268, 269
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	418, 523
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	2 cut(s)	48, 93
AluBI	AGCT	5 cut(s)	19, 130, 508, 581, 589
AluI	AGCT	5 cut(s)	19, 130, 508, 581, 589
Alw21I	GWGCWC	2 cut(s)	132, 153
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	479
Aor51HI	AGCGCT	1 cut(s)	481
AoxI	GGCC	2 cut(s)	46, 144
ApeKI	GCWGC	3 cut(s)	19, 25, 589
AscI	GGCGCGCC	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	6 cut(s)	70, 139, 141, 188, 284, 482
AspS9I	GGNCC	2 cut(s)	144, 259
AsuC2I	CCSGG	3 cut(s)	143, 233, 263
AsuHPI	GGTGA	3 cut(s)	46, 346, 547
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	132, 179
Bbv12I	GWGCWC	2 cut(s)	132, 153
BbvI	GCAGC	3 cut(s)	6, 12, 576
BccI	CCATC	4 cut(s)	250, 298, 364, 485
BceAI	ACGGC	5 cut(s)	61, 130, 131, 173, 238
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	2 cut(s)	50, 95
BcnI	CCSGG	3 cut(s)	143, 233, 263
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	2 cut(s)	65, 318
BfoI	RGCGCY	2 cut(s)	71, 483
BisI	GCNGC	8 cut(s)	20, 23, 26, 36, 39, 285, 309, 590
BlsI	GCNGC	8 cut(s)	21, 24, 27, 37, 40, 286, 310, 591
Bme1390I	CCNGG	5 cut(s)	50, 95, 143, 233, 263
Bme18I	GGWCC	1 cut(s)	259
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	144, 259
BmiI	GGNNCC	4 cut(s)	85, 118, 176, 261
BmrFI	CCNGG	5 cut(s)	50, 95, 143, 233, 263
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	3 cut(s)	143, 233, 263
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	43, 79
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	6 cut(s)	49, 94, 153, 238, 268, 269
BseBI	CCWGG	2 cut(s)	50, 95
BseDI	CCNNGG	2 cut(s)	43, 79
BseGI	GGATG	2 cut(s)	375, 436
BseLI	CCNNNNNNNGG	6 cut(s)	49, 94, 153, 238, 268, 269
BsePI	GCGCGC	1 cut(s)	137
BseRI	GAGGAG	6 cut(s)	254, 263, 266, 343, 356, 527
BseXI	GCAGC	3 cut(s)	6, 12, 576
BseYI	CCCAGC	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	139
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	48, 146
BshNI	GGYRCC	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	2 cut(s)	132, 153
BsiSI	CCGG	7 cut(s)	29, 142, 154, 172, 232, 263, 293
BslFI	GGGAC	2 cut(s)	407, 466
BslI	CCNNNNNNNGG	6 cut(s)	49, 94, 153, 238, 268, 269
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	2 cut(s)	407, 466
BsnI	GGCC	2 cut(s)	48, 146
Bsp1286I	GDGCHC	3 cut(s)	132, 153, 179
Bsp143I	GATC	1 cut(s)	484
BspANI	GGCC	2 cut(s)	48, 146
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	4 cut(s)	85, 118, 176, 261
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	43, 79
BssHII	GCGCGC	1 cut(s)	137
BssMI	GATC	1 cut(s)	484
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	50, 95
Bst6I	CTCTTC	2 cut(s)	66, 110
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	139, 276, 280
BstDEI	CTNAG	3 cut(s)	438, 498, 594
BstDSI	CCRYGG	1 cut(s)	43
BstEII	GGTNACC	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	375, 436
BstFNI	CGCG	1 cut(s)	139
BstH2I	RGCGCY	2 cut(s)	71, 483
BstHHI	GCGC	6 cut(s)	70, 139, 141, 188, 284, 482
BstKTI	GATC	1 cut(s)	487
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	1 cut(s)	484
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 90, 136, 143, 183, 284
BstNI	CCWGG	2 cut(s)	50, 95
BstPI	GGTNACC	1 cut(s)	52
BstSCI	CCNGG	5 cut(s)	48, 93, 141, 231, 261
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	6, 12, 576
BsuRI	GGCC	2 cut(s)	48, 146
BtgI	CCRYGG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	2 cut(s)	375, 436
Cac8I	GCNNGC	3 cut(s)	139, 276, 280
CfoI	GCGC	6 cut(s)	70, 139, 141, 188, 284, 482
Cfr13I	GGNCC	2 cut(s)	144, 259
CseI	GACGC	2 cut(s)	41, 202
DdeI	CTNAG	3 cut(s)	438, 498, 594
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	66, 110
EarI	CTCTTC	2 cut(s)	66, 110
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	2 cut(s)	132, 179
Eco47I	GGWCC	1 cut(s)	259
Eco47III	AGCGCT	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	218, 573
Eco91I	GGTNACC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	48, 93
EcoT38I	GRGCYC	2 cut(s)	132, 179
FaiI	YATR	3 cut(s)	402, 444, 462
FaqI	GGGAC	2 cut(s)	407, 466
FauI	CCCGC	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	8 cut(s)	20, 23, 26, 36, 39, 285, 309, 590
FokI	GGATG	2 cut(s)	382, 443
FriOI	GRGCYC	2 cut(s)	132, 179
Fsp4HI	GCNGC	8 cut(s)	20, 23, 26, 36, 39, 285, 309, 590
FspBI	CTAG	2 cut(s)	65, 318
GlaI	GCGC	6 cut(s)	69, 138, 140, 187, 283, 481
GluI	GCNGC	8 cut(s)	20, 23, 26, 36, 39, 285, 309, 590
GsaI	CCCAGC	1 cut(s)	585
HaeII	RGCGCY	2 cut(s)	71, 483
HaeIII	GGCC	2 cut(s)	48, 146
HapII	CCGG	7 cut(s)	29, 142, 154, 172, 232, 263, 293
HgaI	GACGC	2 cut(s)	41, 202
HhaI	GCGC	6 cut(s)	70, 139, 141, 188, 284, 482
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	6 cut(s)	68, 137, 139, 186, 282, 480
HinP1I	GCGC	6 cut(s)	68, 137, 139, 186, 282, 480
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	2 cut(s)	100, 314
HpaII	CCGG	7 cut(s)	29, 142, 154, 172, 232, 263, 293
HphI	GGTGA	3 cut(s)	46, 346, 547
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	127, 169, 553
Hpy188III	TCNNGA	2 cut(s)	488, 520
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	2 cut(s)	116, 224
HpyAV	CCTTC	3 cut(s)	193, 199, 517
HpyCH4IV	ACGT	1 cut(s)	396
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 90, 136, 143, 183, 284
HpyF3I	CTNAG	3 cut(s)	438, 498, 594
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	6 cut(s)	68, 137, 139, 186, 282, 480
Kzo9I	GATC	1 cut(s)	484
LmnI	GCTCC	3 cut(s)	122, 156, 174
Lsp1109I	GCAGC	3 cut(s)	6, 12, 576
MaeI	CTAG	2 cut(s)	65, 318
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	52, 190
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MboII	GAAGA	4 cut(s)	53, 97, 100, 310
MhlI	GDGCHC	3 cut(s)	132, 153, 179
MluCI	AATT	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	192
MroXI	GAANNNNTTC	1 cut(s)	104
MspI	CCGG	7 cut(s)	29, 142, 154, 172, 232, 263, 293
MspR9I	CCNGG	5 cut(s)	50, 95, 143, 233, 263
MvaI	CCWGG	2 cut(s)	50, 95
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	6 cut(s)	25, 90, 136, 143, 183, 284
NciI	CCSGG	3 cut(s)	143, 233, 263
NdeII	GATC	1 cut(s)	484
NlaIV	GGNNCC	4 cut(s)	85, 118, 176, 261
NmeAIII	GCCGAG	3 cut(s)	60, 113, 313
NmuCI	GTSAC	2 cut(s)	52, 190
PalAI	GGCGCGCC	1 cut(s)	137
PauI	GCGCGC	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	8 cut(s)	21, 24, 27, 37, 40, 286, 310, 591
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	48, 93
PspEI	GGTNACC	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	581
PspGI	CCWGG	2 cut(s)	48, 93
PspN4I	GGNNCC	4 cut(s)	85, 118, 176, 261
PspPI	GGNCC	2 cut(s)	144, 259
PteI	GCGCGC	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	218
SatI	GCNGC	8 cut(s)	20, 23, 26, 36, 39, 285, 309, 590
Sau3AI	GATC	1 cut(s)	484
Sau96I	GGNCC	2 cut(s)	144, 259
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	5 cut(s)	50, 95, 143, 233, 263
SduI	GDGCHC	3 cut(s)	132, 153, 179
SgsI	GGCGCGCC	1 cut(s)	137
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	1 cut(s)	419
SspMI	CTAG	2 cut(s)	65, 318
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	5 cut(s)	48, 93, 141, 231, 261
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	4 cut(s)	9, 111, 219, 577
TasI	AATT	1 cut(s)	419
TauI	GCSGC	5 cut(s)	25, 38, 41, 287, 311
TfiI	GAWTC	1 cut(s)	100
TseFI	GTSAC	2 cut(s)	52, 190
TseI	GCWGC	3 cut(s)	19, 25, 589
Tsp45I	GTSAC	2 cut(s)	52, 190
VpaK11BI	GGWCC	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	2 cut(s)	65, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.