Rh2CG353100

Triphosphate tunel metalloenzyme 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002663
Physical Location & Seq
Reverse (-)
47862413 .. 47865990
3578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG353100.1

Sequence Viewer

Length: 618 bp
ATGGAAGTGGAAGTGAAGCTCCGCCTCCCAGACGCGTCCACACACCAAAAGCTCTCTGACCTCCTCTCACCCTTCCACCTCCAAACCCTAATCCAAGAGAACATCTTCTTCGACGGCTCCAACTCCGAGCTCTCCTCCAACCGCGCCGTCCTCCGCCTGCGCTTCTACGACGTCGTTTCCCGCTGCGTCCTCTCCCTCAAGGCCAAGCCCGTTATCTCCGACGGCGTCAGCCGCGTCTCAGAACTCGAAGAGCCATTCGACCCCGTCCTCGGACGCGCGTGCGTGGCCGAGCCGTGGCGCCTCCTGGGTGTCAGTTCCTCCACGCTCCTAAAGCGCGTGAGAGAGGAGTTCGGGGTCGGAAAGCAAGGGTTTGTGTGCTTGGGTGGGTTTAGAAATGTGAGGGGCGTGTACGAGTGGAAGGGGTTGAAGTTAGAGTTGGACGAGAGCAACTTCGATTTCGGGACGTGTTATGAGTTGGAGTGTGAGAGCATGAACCCTGAGAAGGATAAGAAGGTTCTAGAGGGGTTCTTGGAGGAGAATGGGATAAGATACGAAGTTAATGGATGGTGCATTAATTCTGAGCATGAAATTTGGATACGAGGCTGTGGAGTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYTH

Protein Analysis

205

Amino Acids

23.21

Weight (kDa)

5.16

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYTH PF01928 2 - 181 8.4e-18 CYTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 297
AccII CGCG 6 cut(s) 35, 144, 234, 276, 278, 336
AciI CCGC 5 cut(s) 22, 142, 154, 181, 232
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 588
AcyI GRCGYC 3 cut(s) 171, 225, 298
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 3 cut(s) 269, 294, 502
AflIII ACRYGT 2 cut(s) 33, 464
AgsI TTSAA 1 cut(s) 427
AjiI CACGTC 1 cut(s) 465
AjnI CCWGG 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 3 cut(s) 19, 52, 130
AluI AGCT 3 cut(s) 19, 52, 130
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 241
AoxI GGCC 2 cut(s) 201, 285
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 588
AseI ATTAAT 1 cut(s) 573
Asp700I GAANNNNTTC 1 cut(s) 104
AspLEI GCGC 5 cut(s) 146, 162, 278, 300, 336
AsuHPI GGTGA 1 cut(s) 60
BanI GGYRCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 558
BceAI ACGGC 4 cut(s) 130, 131, 238, 277
BciT130I CCWGG 1 cut(s) 305
BciVI GTATCC 1 cut(s) 588
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 1 cut(s) 518
BfoI RGCGCY 1 cut(s) 301
BfuI GTATCC 1 cut(s) 588
BisI GCNGC 2 cut(s) 184, 232
BlsI GCNGC 2 cut(s) 185, 233
Bme1390I CCNGG 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 465
BmiI GGNNCC 2 cut(s) 118, 299
BmrFI CCNGG 1 cut(s) 305
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpuEI CTTGAG 1 cut(s) 182
BsaHI GRCGYC 3 cut(s) 171, 225, 298
BsaJI CCNNGG 3 cut(s) 268, 293, 304
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 294, 502
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 3 cut(s) 268, 293, 304
BseGI GGATG 1 cut(s) 569
BseLI CCNNNNNNNGG 3 cut(s) 269, 294, 502
BseMII CTCAG 3 cut(s) 252, 489, 570
BseRI GAGGAG 4 cut(s) 53, 124, 359, 548
BseXI GCAGC 1 cut(s) 170
Bsh1236I CGCG 6 cut(s) 35, 144, 234, 276, 278, 336
BshFI GGCC 2 cut(s) 203, 287
BshNI GGYRCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 132
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 3 cut(s) 269, 294, 502
BsmAI GTCTC 1 cut(s) 241
BsmBI CGTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 2 cut(s) 203, 287
Bsp1286I GDGCHC 1 cut(s) 132
BspACI CCGC 5 cut(s) 22, 142, 154, 181, 232
BspANI GGCC 2 cut(s) 203, 287
BspCNI CTCAG 3 cut(s) 251, 490, 571
BspFNI CGCG 6 cut(s) 35, 144, 234, 276, 278, 336
BspLI GGNNCC 2 cut(s) 118, 299
BspQI GCTCTTC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 268, 293, 304
BssNI GRCGYC 3 cut(s) 171, 225, 298
Bst2UI CCWGG 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 3 cut(s) 171, 225, 298
BstC8I GCNNGC 2 cut(s) 158, 280
BstDEI CTNAG 3 cut(s) 238, 498, 579
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 569
BstFNI CGCG 6 cut(s) 35, 144, 234, 276, 278, 336
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 5 cut(s) 146, 162, 278, 300, 336
BstMAI GTCTC 1 cut(s) 241
BstMWI GCNNNNNNNGC 3 cut(s) 231, 284, 331
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstUI CGCG 6 cut(s) 35, 144, 234, 276, 278, 336
BstV1I GCAGC 1 cut(s) 170
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 2 cut(s) 203, 287
BtgI CCRYGG 1 cut(s) 293
BtrI CACGTC 1 cut(s) 465
BtsCI GGATG 1 cut(s) 569
Cac8I GCNNGC 2 cut(s) 158, 280
CfoI GCGC 5 cut(s) 146, 162, 278, 300, 336
CseI GACGC 6 cut(s) 24, 41, 175, 214, 223, 282
Csp6I GTAC 1 cut(s) 409
CviAII CATG 2 cut(s) 490, 584
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 238, 498, 579
DinI GGCGCC 1 cut(s) 299
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 2 cut(s) 11, 143
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 299
EheI GGCGCC 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 2 cut(s) 493, 587
FaiI YATR 3 cut(s) 471, 491, 585
FaqI GGGAC 1 cut(s) 475
FatI CATG 2 cut(s) 489, 583
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 184, 232
FokI GGATG 1 cut(s) 576
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 184, 232
FspBI CTAG 1 cut(s) 518
GlaI GCGC 5 cut(s) 145, 161, 277, 299, 335
GluI GCNGC 2 cut(s) 184, 232
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 2 cut(s) 203, 287
HgaI GACGC 6 cut(s) 24, 41, 175, 214, 223, 282
HhaI GCGC 5 cut(s) 146, 162, 278, 300, 336
Hin1I GRCGYC 3 cut(s) 171, 225, 298
Hin1II CATG 2 cut(s) 493, 587
Hin6I GCGC 5 cut(s) 144, 160, 276, 298, 334
HinP1I GCGC 5 cut(s) 144, 160, 276, 298, 334
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 39, 409
Hpy188I TCNGA 7 cut(s) 58, 127, 220, 241, 272, 359, 580
Hpy188III TCNNGA 2 cut(s) 460, 518
Hpy8I GTNNAC 2 cut(s) 39, 409
Hpy99I CGWCG 4 cut(s) 116, 173, 176, 224
HpyAV CCTTC 4 cut(s) 82, 412, 496, 505
HpyCH4IV ACGT 2 cut(s) 171, 464
HpyCH4V TGCA 1 cut(s) 570
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 284, 331
HpyF3I CTNAG 3 cut(s) 238, 498, 579
HpySE526I ACGT 2 cut(s) 171, 464
Hsp92I GRCGYC 3 cut(s) 171, 225, 298
Hsp92II CATG 2 cut(s) 493, 587
HspAI GCGC 5 cut(s) 144, 160, 276, 298, 334
KasI GGCGCC 1 cut(s) 297
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 3 cut(s) 24, 122, 330
LpnPI CCDG 5 cut(s) 42, 170, 290, 317, 510
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 1 cut(s) 518
MaeII ACGT 2 cut(s) 171, 464
MboII GAAGA 3 cut(s) 97, 100, 260
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 2 cut(s) 574, 588
MluI ACGCGT 1 cut(s) 33
Mly113I GGCGCC 1 cut(s) 298
MmeI TCCRAC 6 cut(s) 144, 162, 243, 337, 417, 456
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 2 cut(s) 558, 573
MspA1I CMGCKG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 6 cut(s) 35, 144, 234, 276, 278, 336
MwoI GCNNNNNNNGC 3 cut(s) 231, 284, 331
NarI GGCGCC 1 cut(s) 298
NlaIII CATG 2 cut(s) 493, 587
NlaIV GGNNCC 2 cut(s) 118, 299
NmeAIII GCCGAG 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 104
PflFI GACNNNGTC 2 cut(s) 224, 263
PkrI GCNGC 2 cut(s) 185, 233
PluTI GGCGCC 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 118, 299
PsyI GACNNNGTC 2 cut(s) 224, 263
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 558, 573
SatI GCNGC 2 cut(s) 184, 232
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 132
SetI ASST 8 cut(s) 21, 54, 63, 81, 132, 174, 467, 516
SfoI GGCGCC 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 574, 588
SsiI CCGC 5 cut(s) 22, 142, 154, 181, 232
SspDI GGCGCC 1 cut(s) 297
SspMI CTAG 1 cut(s) 518
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 303
TaiI ACGT 2 cut(s) 174, 467
TaqI TCGA 4 cut(s) 111, 246, 258, 453
TasI AATT 2 cut(s) 574, 588
TauI GCSGC 1 cut(s) 234
Tru1I TTAA 2 cut(s) 558, 573
Tru9I TTAA 2 cut(s) 558, 573
TseI GCWGC 1 cut(s) 183
TspDTI ATGAA 2 cut(s) 506, 600
Tth111I GACNNNGTC 2 cut(s) 224, 263
VspI ATTAAT 1 cut(s) 573
XapI RAATTY 1 cut(s) 588
XbaI TCTAGA 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 1 cut(s) 518
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.