Rorug07G0187000

Triphosphate tunel metalloenzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002663
Physical Location & Seq
Forward (+)
15762254 .. 15762869
616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0187000.1

Sequence Viewer

Length: 174 bp
ATGAGGGAAATCAAGGTCCAGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACCAAGGCCGCCAAGGTCTTGGAGCAACTCAGCTTGAAGACCAGCCTACTATCGAAGACATCAAGAACATCCTTGGTGCCGAGAAGATGGAGCTGCTGGGATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYTH

Protein Analysis

57

Amino Acids

6.46

Weight (kDa)

10.03

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L5 PF00281 1 - 41 1e-09 Ribosomal protein L5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccBSI CCGCTC 1 cut(s) 54
AciI CCGC 2 cut(s) 54, 75
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 3 cut(s) 25, 99, 159
AluI AGCT 3 cut(s) 25, 99, 159
Alw26I GTCTC 1 cut(s) 68
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 142
BbsI GAAGAC 2 cut(s) 110, 128
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 68
BisI GCNGC 3 cut(s) 55, 75, 160
BlsI GCNGC 3 cut(s) 56, 76, 161
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 110, 128
BsaJI CCNNGG 3 cut(s) 69, 78, 138
BseDI CCNNGG 3 cut(s) 69, 78, 138
BseGI GGATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 146
BseYI CCCAGC 1 cut(s) 162
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 142
BsiEI CGRYCG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 68
BsmBI CGTCTC 1 cut(s) 68
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 2 cut(s) 54, 75
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 142
BsrBI CCGCTC 1 cut(s) 54
BssECI CCNNGG 3 cut(s) 69, 78, 138
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 3 cut(s) 69, 78, 138
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 58
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 2 cut(s) 110, 128
BstXI CCANNNNNNTGG 1 cut(s) 85
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 16
CviJI RGCY 5 cut(s) 25, 74, 99, 111, 159
CviKI_1 RGCY 5 cut(s) 25, 74, 99, 111, 159
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco130I CCWWGG 3 cut(s) 69, 78, 138
Eco47I GGWCC 1 cut(s) 16
EcoT14I CCWWGG 3 cut(s) 69, 78, 138
ErhI CCWWGG 3 cut(s) 69, 78, 138
Esp3I CGTCTC 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 55, 75, 160
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 3 cut(s) 55, 75, 160
GluI GCNGC 3 cut(s) 55, 75, 160
GsaI CCCAGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 74
HphI GGTGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 19, 129
Hpy99I CGWCG 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 95
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 2 cut(s) 88, 156
LpnPI CCDG 3 cut(s) 32, 121, 148
Lsp1109I GCAGC 1 cut(s) 146
MalI GATC 1 cut(s) 60
MbiI CCGCTC 1 cut(s) 54
MboI GATC 1 cut(s) 58
MboII GAAGA 3 cut(s) 115, 133, 162
MnlI CCTC 1 cut(s) 41
MseI TTAA 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 144
NmeAIII GCCGAG 1 cut(s) 171
PkrI GCNGC 3 cut(s) 56, 76, 161
Ple19I CGATCG 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 16
PvuI CGATCG 1 cut(s) 61
SaqAI TTAA 1 cut(s) 172
SatI GCNGC 3 cut(s) 55, 75, 160
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 16
SetI ASST 5 cut(s) 18, 27, 84, 101, 161
SinI GGWCC 1 cut(s) 16
SsiI CCGC 2 cut(s) 54, 75
StyI CCWWGG 3 cut(s) 69, 78, 138
TaqI TCGA 1 cut(s) 119
TauI GCSGC 2 cut(s) 57, 77
Tru1I TTAA 1 cut(s) 172
Tru9I TTAA 1 cut(s) 172
TseI GCWGC 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.