Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002663

Physical Location & Seq

Genomic Coordinates Reverse (-)

38681726 .. 38682314

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0317100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATGACTATGCATGTGGCTGTTTTGGAGGGTGTTAAGTATAGGAACATTGATGGTGAGCTTGTTGGTGTTGTAGGGGACTCGTGGGTGCTGAGGCCAGAGCCTGTTTCGGTTACTTGCCATTCGATTAAGGGTGTTAAGGAAGAGTCGAAAAGGAAGTTGGTTGCCAGGGCGGCGAGGCTGGCTTTGATTGCTGAGGAGGTGGGTTATGTTGATGTGATTCTGGCGATTGAGAAGTACTTGAGGGATGCAATTGAGCCATGGTTTTGGATGGGACTTTTGGTGGGAATGGGTTTTTGTATGAGAGTGAATGGGGTGGCATTGTTACTAAACAAGGATCATTGGATTCTGGTGCAGATGTCGGGCAACACTCTGGGATGTACACTCAAAACTGATCTCAAGGATTATAATAAGATTGTTATCCCAAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYTH

Protein Analysis

144

Amino Acids

16.15

Weight (kDa)

8.45

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11890 AT2G11890
fragaria_vesca	FvH4_6g29260 FvH4_7g01830
malus_domestica	MD02G1018700.v1.1 MD15G1162700.v1.1 MD17G1216500.v1.1
prunus_persica	Prupe.3G092500_v2.0.a1 Prupe.7G252100_v2.0.a1
pyrus_communis	pycom15g14630
rosa_chinensis	RchiOBHm_Chr2g0087111 RchiOBHm_Chr2g0134431 RchiOBHm_Chr7g0219721
rosa_multiflora	Rmu_co8243769.1_g000001 Rmu_sc0000902.1_g000016 Rmu_sc0003367.1_g000001 Rmu_sc0005464.1_g000008 Rmu_sc0005571.1_g000033 Rmu_ssc0000239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153790 Rroxscaffold_2G00153870 Rroxscaffold_3G00239900
rosa_rugosa	Rorug01G0472600 Rorug02G0317100 Rorug07G0187000
rosa_samantha	Rh2AG025800 Rh2AG369700 Rh2BG025600 Rh2BG375600 Rh2CG026100 Rh2CG353100 Rh2DG026000 Rh2DG392700 Rh7AG331000 Rh7BG320800 Rh7CG348400 Rh7DG326500
rosa_wichuraiana	Rw2G002060 Rw2G030110 Rw7G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	1 cut(s)	345
AfaI	GTAC	2 cut(s)	239, 382
AjnI	CCWGG	1 cut(s)	167
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
AlwI	GGATC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	68
BauI	CACGAG	1 cut(s)	82
BbvCI	CCTCAGC	2 cut(s)	92, 195
BccI	CCATC	2 cut(s)	47, 265
BciT130I	CCWGG	1 cut(s)	169
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	238
Bpu10I	CCTNAGC	2 cut(s)	92, 195
BpuEI	CTTGAG	2 cut(s)	262, 383
BsaBI	GATNNNNATC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	168, 260
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	168, 260
BseGI	GGATG	3 cut(s)	253, 276, 383
BseJI	GATNNNNATC	1 cut(s)	419
BseMII	CTCAG	2 cut(s)	83, 186
BseRI	GAGGAG	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	97
BslFI	GGGAC	2 cut(s)	92, 288
BsmFI	GGGAC	2 cut(s)	92, 288
BsnI	GGCC	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	337, 394
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	84, 187
BspPI	GGATC	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	380
BssECI	CCNNGG	2 cut(s)	168, 260
BssMI	GATC	2 cut(s)	337, 394
BssSI	CACGAG	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	92, 195
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	3 cut(s)	253, 276, 383
BstKTI	GATC	2 cut(s)	340, 397
BstMBI	GATC	2 cut(s)	337, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 191
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	167
BstXI	CCANNNNNNTGG	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	3 cut(s)	253, 276, 383
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	238, 381
CviAII	CATG	2 cut(s)	14, 261
CviJI	RGCY	7 cut(s)	20, 61, 97, 103, 181, 185, 259
CviKI_1	RGCY	7 cut(s)	20, 61, 97, 103, 181, 185, 259
CviQI	GTAC	2 cut(s)	238, 381
DdeI	CTNAG	2 cut(s)	92, 195
DpnI	GATC	2 cut(s)	339, 396
DpnII	GATC	2 cut(s)	337, 394
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	17, 264
FaiI	YATR	7 cut(s)	11, 15, 42, 210, 262, 302, 408
FaqI	GGGAC	2 cut(s)	92, 288
FatI	CATG	2 cut(s)	13, 260
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	3 cut(s)	260, 283, 390
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	17, 264
HinfI	GANTC	4 cut(s)	80, 146, 220, 346
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	383
Hpy8I	GTNNAC	1 cut(s)	383
HpyCH4V	TGCA	3 cut(s)	13, 251, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 191
HpyF3I	CTNAG	2 cut(s)	92, 195
Hsp92II	CATG	2 cut(s)	17, 264
Kzo9I	GATC	2 cut(s)	337, 394
LpnPI	CCDG	8 cut(s)	111, 117, 154, 167, 181, 209, 335, 359
LweI	GCATC	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	112, 324
MalI	GATC	2 cut(s)	339, 396
MboI	GATC	2 cut(s)	337, 394
MboII	GAAGA	1 cut(s)	155
MfeI	CAATTG	1 cut(s)	252
MluCI	AATT	1 cut(s)	252
MlyI	GAGTC	2 cut(s)	74, 155
MnlI	CCTC	6 cut(s)	22, 87, 171, 190, 193, 237
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	3 cut(s)	36, 129, 138
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 191
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	337, 394
NlaIII	CATG	2 cut(s)	17, 264
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	220, 346
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	2 cut(s)	74, 154
PpsI	GAGTC	2 cut(s)	74, 154
PsiI	TTATAA	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PstNI	CAGNNNCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	239, 382
RsaNI	GTAC	2 cut(s)	238, 381
SaqAI	TTAA	3 cut(s)	36, 129, 138
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	337, 394
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	2 cut(s)	74, 155
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	2 cut(s)	63, 204
SfaNI	GCATC	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	241, 398
SmoI	CTYRAG	2 cut(s)	241, 398
Sse9I	AATT	1 cut(s)	252
SsiI	CCGC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	260
TaqI	TCGA	2 cut(s)	125, 149
TasI	AATT	1 cut(s)	252
TatI	WGTACW	2 cut(s)	237, 380
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	220, 346
Tru1I	TTAA	3 cut(s)	36, 129, 138
Tru9I	TTAA	3 cut(s)	36, 129, 138
XceI	RCATGY	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.