pycom15g14630

Triphosphate tunel metalloenzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002663
Physical Location & Seq
Reverse (-)
10016194 .. 10017148
955 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g14630.1

Sequence Viewer

Length: 858 bp
ATGAGACTAATAAAGTCATCAAATGCTGAGACGAAAGCCAACCAAGATCGAACTCAAAATCGAAGACAAAGACGAACTCGAAAAAGCTCGCAAGCAGCGCGCCGCCGCCACCTCCATCACCACAACCACCGCCGCCACTACTCTCCTCCACCGCGTCGACCGCGCCAAAGACCCCTCCTCCAAAACGCACCGTATCGGGCTTCCTCAGTAATCGAATTTCGAACGCCTCCAAATATCTTTATGTCTCAAATCCCCAAAGCTCTGATGGAAGTGGAGGTCAAGCTCCGGCTCCTGGACGCCGCCGCCCACGGCCAAGTCACCACCCTCCCGGCGCCGTTCCTCGTCGCCACACACCGCCAGGAGAATCTCTTCTTCGACGGCTCCAAAGCCGAGCTCGCGGGGCGCCGGGCCGTCCTCCGGCTACGATTCTCCGACAGGAGCCCTCTCTGTGCCGCGCGGGCAGTGGTGGTCCAAGGCGTCAGCCGAGTTGAGGAGGACGAGGAGGACCTCGACCATTCGATCGGGCGGGCCTGCGCTGCCGAACCAGAGAAGCTGATGACGGCGGAGTCTAGGGTTCTGAGGAGGGTGAGAGAGGAATTTGGGGTTTTAGGGTTTGTGGGATTGGGAGGTTTCAGGAATATGAGGGATGTGTATGATTGGAAAGGCTTGAAAATGGAGGTGGATGAGACTAAGTATGATTTTGGTACTTGTTATGAGATTGAGTGTGAGAGTGCTGACTCTGAAGGAGTCAAGGTGGTGCTTGAGGACTTCTTGAAGGAAGATGTGGTTCGGTATTCGTACTCAGAAGTATCAAAGTTTGCAATTTTTCGAGCTGGGAAGCTGCCCGTTACTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYTH

Protein Analysis

286

Amino Acids

32.66

Weight (kDa)

9.74

Isoelectric Point (pI)

68.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYTH PF01928 89 - 260 1.9e-16 CYTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 565
AccB1I GGYRCC 2 cut(s) 331, 402
AccI GTMKAC 1 cut(s) 157
AccII CGCG 6 cut(s) 100, 154, 163, 398, 455, 457
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 2 cut(s) 215, 596
AcuI CTGAAG 1 cut(s) 762
AcyI GRCGYC 4 cut(s) 297, 332, 403, 477
AfaI GTAC 2 cut(s) 706, 800
AfiI CCNNNNNNNGG 4 cut(s) 292, 417, 490, 851
AgsI TTSAA 2 cut(s) 670, 775
AjnI CCWGG 2 cut(s) 291, 357
AluBI AGCT 7 cut(s) 87, 260, 283, 394, 553, 833, 841
AluI AGCT 7 cut(s) 87, 260, 283, 394, 553, 833, 841
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 3 cut(s) 23, 249, 680
AoxI GGCC 3 cut(s) 310, 408, 528
ApeKI GCWGC 3 cut(s) 95, 536, 841
ApoI RAATTY 2 cut(s) 215, 596
Asp700I GAANNNNTTC 1 cut(s) 368
AspLEI GCGC 7 cut(s) 100, 102, 165, 334, 405, 457, 536
AspS9I GGNCC 4 cut(s) 408, 469, 505, 528
AsuC2I CCSGG 2 cut(s) 329, 407
AsuHPI GGTGA 3 cut(s) 110, 310, 598
AsuII TTCGAA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 469, 505
BanI GGYRCC 2 cut(s) 331, 402
BanII GRGCYC 2 cut(s) 396, 443
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 107, 523, 828
BccI CCATC 2 cut(s) 123, 259
BceAI ACGGC 5 cut(s) 319, 325, 394, 395, 576
BciT130I CCWGG 2 cut(s) 293, 359
BcnI CCSGG 2 cut(s) 329, 407
BcoDI GTCTC 3 cut(s) 23, 249, 680
BfaI CTAG 1 cut(s) 570
BfoI RGCGCY 2 cut(s) 335, 406
BglI GCCNNNNNGGC 1 cut(s) 458
BisI GCNGC 9 cut(s) 96, 103, 106, 133, 300, 303, 453, 537, 842
BlsI GCNGC 9 cut(s) 97, 104, 107, 134, 301, 304, 454, 538, 843
Bme1390I CCNGG 4 cut(s) 293, 329, 359, 407
Bme18I GGWCC 2 cut(s) 469, 505
BmgT120I GGNCC 4 cut(s) 408, 469, 505, 528
BmiI GGNNCC 5 cut(s) 290, 333, 382, 404, 440
BmrFI CCNGG 4 cut(s) 293, 329, 359, 407
BpiI GAAGAC 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 782
BpuMI CCSGG 2 cut(s) 329, 407
BsaHI GRCGYC 4 cut(s) 297, 332, 403, 477
BsaJI CCNNGG 2 cut(s) 307, 472
BsaXI ACNNNNNCTCC 4 cut(s) 162, 192, 738, 768
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 417, 490, 851
Bse1I ACTGG 1 cut(s) 856
BseBI CCWGG 2 cut(s) 293, 359
BseDI CCNNGG 2 cut(s) 307, 472
BseGI GGATG 2 cut(s) 652, 688
BseLI CCNNNNNNNGG 4 cut(s) 292, 417, 490, 851
BseMII CTCAG 4 cut(s) 18, 219, 569, 816
BseNI ACTGG 1 cut(s) 856
BsePI GCGCGC 1 cut(s) 98
BseRI GAGGAG 5 cut(s) 135, 167, 506, 515, 595
BseXI GCAGC 3 cut(s) 107, 523, 828
BseYI CCCAGC 1 cut(s) 833
Bsh1236I CGCG 6 cut(s) 100, 154, 163, 398, 455, 457
Bsh1285I CGRYCG 2 cut(s) 161, 522
BshFI GGCC 3 cut(s) 312, 410, 530
BshNI GGYRCC 2 cut(s) 331, 402
BsiEI CGRYCG 2 cut(s) 161, 522
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 4 cut(s) 286, 329, 406, 418
BslI CCNNNNNNNGG 4 cut(s) 292, 417, 490, 851
BsmAI GTCTC 3 cut(s) 23, 249, 680
BsmBI CGTCTC 1 cut(s) 23
BsnI GGCC 3 cut(s) 312, 410, 530
Bsp119I TTCGAA 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 396, 443
Bsp143I GATC 2 cut(s) 46, 519
BspANI GGCC 3 cut(s) 312, 410, 530
BspCNI CTCAG 4 cut(s) 19, 218, 570, 815
BspFNI CGCG 6 cut(s) 100, 154, 163, 398, 455, 457
BspLI GGNNCC 5 cut(s) 290, 333, 382, 404, 440
BspT104I TTCGAA 1 cut(s) 220
BspT107I GGYRCC 2 cut(s) 331, 402
BsrI ACTGG 1 cut(s) 856
BssECI CCNNGG 2 cut(s) 307, 472
BssHII GCGCGC 1 cut(s) 98
BssMI GATC 2 cut(s) 46, 519
BssNI GRCGYC 4 cut(s) 297, 332, 403, 477
BssT1I CCWWGG 1 cut(s) 472
Bst2UI CCWGG 2 cut(s) 293, 359
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 374
BstACI GRCGYC 4 cut(s) 297, 332, 403, 477
BstBI TTCGAA 1 cut(s) 220
BstC8I GCNNGC 7 cut(s) 89, 93, 100, 396, 459, 528, 532
BstDEI CTNAG 5 cut(s) 27, 205, 578, 690, 802
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 2 cut(s) 652, 688
BstFNI CGCG 6 cut(s) 100, 154, 163, 398, 455, 457
BstH2I RGCGCY 2 cut(s) 335, 406
BstHHI GCGC 7 cut(s) 100, 102, 165, 334, 405, 457, 536
BstKTI GATC 2 cut(s) 49, 522
BstMAI GTCTC 3 cut(s) 23, 249, 680
BstMBI GATC 2 cut(s) 46, 519
BstMCI CGRYCG 2 cut(s) 161, 522
BstMWI GCNNNNNNNGC 6 cut(s) 97, 160, 395, 400, 458, 536
BstNI CCWGG 2 cut(s) 293, 359
BstSCI CCNGG 4 cut(s) 291, 327, 357, 405
BstUI CGCG 6 cut(s) 100, 154, 163, 398, 455, 457
BstV1I GCAGC 3 cut(s) 107, 523, 828
BstV2I GAAGAC 1 cut(s) 70
BsuRI GGCC 3 cut(s) 312, 410, 530
BtgI CCRYGG 1 cut(s) 307
BtsCI GGATG 2 cut(s) 652, 688
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 7 cut(s) 89, 93, 100, 396, 459, 528, 532
CfoI GCGC 7 cut(s) 100, 102, 165, 334, 405, 457, 536
Cfr13I GGNCC 4 cut(s) 408, 469, 505, 528
CseI GACGC 3 cut(s) 143, 305, 466
Csp6I GTAC 2 cut(s) 705, 799
CviQI GTAC 2 cut(s) 705, 799
DdeI CTNAG 5 cut(s) 27, 205, 578, 690, 802
DinI GGCGCC 2 cut(s) 333, 404
DpnI GATC 2 cut(s) 48, 521
DpnII GATC 2 cut(s) 46, 519
DrdI GACNNNNNNGTC 1 cut(s) 565
DseDI GACNNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
EciI GGCGGA 1 cut(s) 578
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 472
Eco24I GRGCYC 2 cut(s) 396, 443
Eco47I GGWCC 2 cut(s) 469, 505
Eco53kI GAGCTC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 762
EcoICRI GAGCTC 1 cut(s) 394
EcoO109I RGGNCCY 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 291, 357
EcoT14I CCWWGG 1 cut(s) 472
EcoT38I GRGCYC 2 cut(s) 396, 443
EgeI GGCGCC 2 cut(s) 333, 404
EheI GGCGCC 2 cut(s) 333, 404
ErhI CCWWGG 1 cut(s) 472
Esp3I CGTCTC 1 cut(s) 23
FaiI YATR 5 cut(s) 242, 641, 654, 696, 714
FauI CCCGC 3 cut(s) 391, 450, 519
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 9 cut(s) 96, 103, 106, 133, 300, 303, 453, 537, 842
FokI GGATG 2 cut(s) 659, 695
FriOI GRGCYC 2 cut(s) 396, 443
Fsp4HI GCNGC 9 cut(s) 96, 103, 106, 133, 300, 303, 453, 537, 842
FspBI CTAG 1 cut(s) 570
GlaI GCGC 7 cut(s) 99, 101, 164, 333, 404, 456, 535
GluI GCNGC 9 cut(s) 96, 103, 106, 133, 300, 303, 453, 537, 842
GsaI CCCAGC 1 cut(s) 837
HaeII RGCGCY 2 cut(s) 335, 406
HaeIII GGCC 3 cut(s) 312, 410, 530
HapII CCGG 4 cut(s) 286, 329, 406, 418
HgaI GACGC 3 cut(s) 143, 305, 466
HhaI GCGC 7 cut(s) 100, 102, 165, 334, 405, 457, 536
Hin1I GRCGYC 4 cut(s) 297, 332, 403, 477
Hin6I GCGC 7 cut(s) 98, 100, 163, 332, 403, 455, 534
HinP1I GCGC 7 cut(s) 98, 100, 163, 332, 403, 455, 534
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 5 cut(s) 364, 426, 566, 737, 747
HpaII CCGG 4 cut(s) 286, 329, 406, 418
HphI GGTGA 3 cut(s) 110, 310, 598
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 5 cut(s) 264, 433, 579, 742, 805
Hpy188III TCNNGA 2 cut(s) 634, 772
Hpy8I GTNNAC 1 cut(s) 158
Hpy99I CGWCG 3 cut(s) 159, 347, 380
HpyAV CCTTC 2 cut(s) 737, 769
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 821
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 160, 395, 400, 458, 536
HpyF3I CTNAG 5 cut(s) 27, 205, 578, 690, 802
Hsp92I GRCGYC 4 cut(s) 297, 332, 403, 477
HspAI GCGC 7 cut(s) 98, 100, 163, 332, 403, 455, 534
KasI GGCGCC 2 cut(s) 331, 402
Kzo9I GATC 2 cut(s) 46, 519
LmnI GCTCC 4 cut(s) 288, 294, 386, 438
Lsp1109I GCAGC 3 cut(s) 107, 523, 828
MaeI CTAG 1 cut(s) 570
MaeIII GTNAC 2 cut(s) 316, 847
MalI GATC 2 cut(s) 48, 521
MboI GATC 2 cut(s) 46, 519
MboII GAAGA 4 cut(s) 75, 361, 364, 791
MhlI GDGCHC 2 cut(s) 396, 443
MluCI AATT 3 cut(s) 215, 596, 822
Mly113I GGCGCC 2 cut(s) 332, 403
MlyI GAGTC 3 cut(s) 575, 731, 756
MmeI TCCRAC 1 cut(s) 456
MroXI GAANNNNTTC 1 cut(s) 368
MspI CCGG 4 cut(s) 286, 329, 406, 418
MspR9I CCNGG 4 cut(s) 293, 329, 359, 407
MvaI CCWGG 2 cut(s) 293, 359
MvnI CGCG 6 cut(s) 100, 154, 163, 398, 455, 457
MwoI GCNNNNNNNGC 6 cut(s) 97, 160, 395, 400, 458, 536
NarI GGCGCC 2 cut(s) 332, 403
NciI CCSGG 2 cut(s) 329, 407
NdeII GATC 2 cut(s) 46, 519
NlaIV GGNNCC 5 cut(s) 290, 333, 382, 404, 440
NmeAIII GCCGAG 2 cut(s) 415, 509
NmuCI GTSAC 1 cut(s) 316
NspV TTCGAA 1 cut(s) 220
PauI GCGCGC 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 364, 426
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 9 cut(s) 97, 104, 107, 134, 301, 304, 454, 538, 843
Ple19I CGATCG 1 cut(s) 522
PleI GAGTC 3 cut(s) 574, 731, 755
PluTI GGCGCC 2 cut(s) 335, 406
PpsI GAGTC 3 cut(s) 574, 731, 755
PpuMI RGGWCCY 1 cut(s) 505
Psp124BI GAGCTC 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 505
Psp6I CCWGG 2 cut(s) 291, 357
PspFI CCCAGC 1 cut(s) 833
PspGI CCWGG 2 cut(s) 291, 357
PspN4I GGNNCC 5 cut(s) 290, 333, 382, 404, 440
PspPI GGNCC 4 cut(s) 408, 469, 505, 528
PspPPI RGGWCCY 1 cut(s) 505
PteI GCGCGC 1 cut(s) 98
PvuI CGATCG 1 cut(s) 522
RsaI GTAC 2 cut(s) 706, 800
RsaNI GTAC 2 cut(s) 705, 799
SacI GAGCTC 1 cut(s) 396
SalI GTCGAC 1 cut(s) 156
SatI GCNGC 9 cut(s) 96, 103, 106, 133, 300, 303, 453, 537, 842
Sau3AI GATC 2 cut(s) 46, 519
Sau96I GGNCC 4 cut(s) 408, 469, 505, 528
SchI GAGTC 3 cut(s) 575, 731, 756
ScrFI CCNGG 4 cut(s) 293, 329, 359, 407
SduI GDGCHC 2 cut(s) 396, 443
SfoI GGCGCC 2 cut(s) 333, 404
SfuI TTCGAA 1 cut(s) 220
SinI GGWCC 2 cut(s) 469, 505
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 3 cut(s) 215, 596, 822
SspDI GGCGCC 2 cut(s) 331, 402
SspMI CTAG 1 cut(s) 570
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 4 cut(s) 291, 327, 357, 405
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 1 cut(s) 192
TasI AATT 3 cut(s) 215, 596, 822
TauI GCSGC 6 cut(s) 105, 108, 135, 302, 305, 455
TfiI GAWTC 2 cut(s) 364, 426
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 95, 536, 841
Tsp45I GTSAC 1 cut(s) 316
TspRI CASTG 1 cut(s) 468
VpaK11BI GGWCC 2 cut(s) 469, 505
XapI RAATTY 2 cut(s) 215, 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.