FvH4_6g29260

Triphosphate tunel metalloenzyme 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002663
Physical Location & Seq
Reverse (-)
22579609 .. 22580223
615 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29260.t1

Sequence Viewer

Length: 615 bp
ATGGAAGTGGAAGTGAAGCTCCGCCTCCTAGACGCCTCCACACACCAAAAGCTCTCCGACCTCCTCTCACCCTTCCACCTCCAAACCCTAATCCAAGAGAACATCTTCTTCGACGGCTCCAACTCCGAGCTCTCCTCCAACCGCGCCATCCTCCGCCTCCGCTTCTACGACGTCGCTTCCCGATCCTGCGTCCTCTCCCTCAAGGCCAAGCCCCTCATCTCCCACGGCGTCAGCCGCGTCTTGGAACTCGAAGAGCCATTCGACCCCGTCCTCGGACGCGCGTGCGTGGCCGAGCCCTGGCGCCTCATGGCTGCTGTCAGCTCGTCCACGCTCCTAAAGCGCGTGAGGGAGGAGTTCGGGGTCGGAGAGCAAGGGTTTGTGTGCTTGGGAGGGTTTAGAAATGTGAGGGGCGTGTACGAGTGGGAGGGGTTGAAGCTAGAGTTGGACGAGAGCAACTTCGACTTTGGGACGTGTTATGAGTTGGAGTGTGAGAGCTTGGACCCTGAGAAGGATAAGAAGGTTCTAGAGAGGTTCCTGGAGGAGAATGGGATCAGGTACAAGTACTCGGAGGTTTCCAAGTTTGGGGTGTTTAAGTCCGGCAAGTTGCCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYTH

Protein Analysis

205

Amino Acids

23.21

Weight (kDa)

5.3

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYTH PF01928 2 - 187 5.9e-17 CYTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 300
AccII CGCG 5 cut(s) 144, 237, 279, 281, 342
AciI CCGC 5 cut(s) 22, 142, 154, 160, 235
AclWI GGATC 2 cut(s) 177, 557
AcoI YGGCCR 1 cut(s) 288
AcyI GRCGYC 4 cut(s) 33, 171, 228, 301
AfaI GTAC 3 cut(s) 416, 557, 563
AfiI CCNNNNNNNGG 5 cut(s) 241, 272, 297, 508, 582
AflIII ACRYGT 1 cut(s) 470
AgsI TTSAA 1 cut(s) 433
AjiI CACGTC 1 cut(s) 471
AjnI CCWGG 2 cut(s) 296, 534
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 6 cut(s) 19, 52, 130, 321, 436, 495
AluI AGCT 6 cut(s) 19, 52, 130, 321, 436, 495
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 2 cut(s) 177, 557
AoxI GGCC 2 cut(s) 204, 288
ApeKI GCWGC 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 104
AspLEI GCGC 4 cut(s) 146, 281, 303, 342
AspS9I GGNCC 1 cut(s) 499
AsuHPI GGTGA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 132, 297
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 155
BceAI ACGGC 2 cut(s) 130, 241
BciT130I CCWGG 2 cut(s) 298, 536
BfaI CTAG 3 cut(s) 29, 437, 524
BfoI RGCGCY 1 cut(s) 304
BisI GCNGC 2 cut(s) 235, 312
BlsI GCNGC 2 cut(s) 236, 313
BmcAI AGTACT 1 cut(s) 563
Bme1390I CCNGG 2 cut(s) 298, 536
Bme18I GGWCC 1 cut(s) 499
BmgBI CACGTC 1 cut(s) 471
BmgT120I GGNCC 1 cut(s) 499
BmiI GGNNCC 4 cut(s) 118, 302, 501, 533
BmrFI CCNGG 2 cut(s) 298, 536
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 185
BsaHI GRCGYC 4 cut(s) 33, 171, 228, 301
BsaJI CCNNGG 3 cut(s) 223, 271, 296
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 272, 297, 508, 582
BseBI CCWGG 2 cut(s) 298, 536
BseDI CCNNGG 3 cut(s) 223, 271, 296
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 5 cut(s) 241, 272, 297, 508, 582
BseMII CTCAG 1 cut(s) 495
BseRI GAGGAG 4 cut(s) 53, 124, 365, 554
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 5 cut(s) 144, 237, 279, 281, 342
BshFI GGCC 2 cut(s) 206, 290
BshNI GGYRCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 2 cut(s) 597, 608
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 5 cut(s) 241, 272, 297, 508, 582
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 2 cut(s) 206, 290
Bsp1286I GDGCHC 2 cut(s) 132, 297
Bsp143I GATC 2 cut(s) 182, 549
BspACI CCGC 5 cut(s) 22, 142, 154, 160, 235
BspANI GGCC 2 cut(s) 206, 290
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 5 cut(s) 144, 237, 279, 281, 342
BspLI GGNNCC 4 cut(s) 118, 302, 501, 533
BspPI GGATC 2 cut(s) 177, 557
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 300
BssECI CCNNGG 3 cut(s) 223, 271, 296
BssMI GATC 2 cut(s) 182, 549
BssNI GRCGYC 4 cut(s) 33, 171, 228, 301
Bst2UI CCWGG 2 cut(s) 298, 536
Bst6I CTCTTC 1 cut(s) 246
BstACI GRCGYC 4 cut(s) 33, 171, 228, 301
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 504
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 5 cut(s) 144, 237, 279, 281, 342
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 4 cut(s) 146, 281, 303, 342
BstKTI GATC 2 cut(s) 185, 552
BstMBI GATC 2 cut(s) 182, 549
BstMWI GCNNNNNNNGC 3 cut(s) 234, 287, 337
BstNI CCWGG 2 cut(s) 298, 536
BstSCI CCNGG 2 cut(s) 296, 534
BstUI CGCG 5 cut(s) 144, 237, 279, 281, 342
BstV1I GCAGC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 206, 290
BtgI CCRYGG 1 cut(s) 223
BtrI CACGTC 1 cut(s) 471
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 283
CfoI GCGC 4 cut(s) 146, 281, 303, 342
Cfr13I GGNCC 1 cut(s) 499
CseI GACGC 5 cut(s) 41, 178, 217, 226, 285
Csp6I GTAC 3 cut(s) 415, 556, 562
CviAII CATG 1 cut(s) 307
CviQI GTAC 3 cut(s) 415, 556, 562
DdeI CTNAG 1 cut(s) 504
DinI GGCGCC 1 cut(s) 302
DpnI GATC 2 cut(s) 184, 551
DpnII GATC 2 cut(s) 182, 549
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EciI GGCGGA 2 cut(s) 11, 143
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 2 cut(s) 132, 297
Eco47I GGWCC 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 296, 534
EcoT38I GRGCYC 2 cut(s) 132, 297
EgeI GGCGCC 1 cut(s) 302
EheI GGCGCC 1 cut(s) 302
FaeI CATG 1 cut(s) 310
FaiI YATR 2 cut(s) 308, 477
FaqI GGGAC 1 cut(s) 481
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 235, 312
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 132, 297
Fsp4HI GCNGC 2 cut(s) 235, 312
FspBI CTAG 3 cut(s) 29, 437, 524
GlaI GCGC 4 cut(s) 145, 280, 302, 341
GluI GCNGC 2 cut(s) 235, 312
GsuI CTGGAG 1 cut(s) 557
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 2 cut(s) 206, 290
HapII CCGG 2 cut(s) 597, 608
HgaI GACGC 5 cut(s) 41, 178, 217, 226, 285
HhaI GCGC 4 cut(s) 146, 281, 303, 342
Hin1I GRCGYC 4 cut(s) 33, 171, 228, 301
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 4 cut(s) 144, 279, 301, 340
HinP1I GCGC 4 cut(s) 144, 279, 301, 340
HpaII CCGG 2 cut(s) 597, 608
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 327, 415
Hpy188I TCNGA 5 cut(s) 58, 127, 275, 365, 568
Hpy188III TCNNGA 2 cut(s) 180, 524
Hpy8I GTNNAC 2 cut(s) 327, 415
Hpy99I CGWCG 3 cut(s) 116, 173, 176
HpyAV CCTTC 3 cut(s) 82, 502, 511
HpyCH4IV ACGT 2 cut(s) 171, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 234, 287, 337
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 2 cut(s) 171, 470
Hsp92I GRCGYC 4 cut(s) 33, 171, 228, 301
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 4 cut(s) 144, 279, 301, 340
KasI GGCGCC 1 cut(s) 300
Kzo9I GATC 2 cut(s) 182, 549
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 3 cut(s) 24, 122, 336
LpnPI CCDG 8 cut(s) 199, 283, 310, 516, 521, 538, 548, 610
Lsp1109I GCAGC 1 cut(s) 298
MaeI CTAG 3 cut(s) 29, 437, 524
MaeII ACGT 2 cut(s) 171, 470
MalI GATC 2 cut(s) 184, 551
MboI GATC 2 cut(s) 182, 549
MboII GAAGA 3 cut(s) 97, 100, 263
MhlI GDGCHC 2 cut(s) 132, 297
Mly113I GGCGCC 1 cut(s) 301
MmeI TCCRAC 6 cut(s) 81, 144, 162, 343, 423, 462
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 1 cut(s) 591
MspI CCGG 2 cut(s) 597, 608
MspR9I CCNGG 2 cut(s) 298, 536
MvaI CCWGG 2 cut(s) 298, 536
MvnI CGCG 5 cut(s) 144, 237, 279, 281, 342
MwoI GCNNNNNNNGC 3 cut(s) 234, 287, 337
NarI GGCGCC 1 cut(s) 301
NdeII GATC 2 cut(s) 182, 549
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 4 cut(s) 118, 302, 501, 533
NmeAIII GCCGAG 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 266
PfoI TCCNGGA 1 cut(s) 534
PkrI GCNGC 2 cut(s) 236, 313
PluTI GGCGCC 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 296, 534
PspGI CCWGG 2 cut(s) 296, 534
PspN4I GGNNCC 4 cut(s) 118, 302, 501, 533
PspPI GGNCC 1 cut(s) 499
PsyI GACNNNGTC 1 cut(s) 266
RsaI GTAC 3 cut(s) 416, 557, 563
RsaNI GTAC 3 cut(s) 415, 556, 562
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 2 cut(s) 235, 312
Sau3AI GATC 2 cut(s) 182, 549
Sau96I GGNCC 1 cut(s) 499
ScaI AGTACT 1 cut(s) 563
ScrFI CCNGG 2 cut(s) 298, 536
SduI GDGCHC 2 cut(s) 132, 297
SfoI GGCGCC 1 cut(s) 302
SinI GGWCC 1 cut(s) 499
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SsiI CCGC 5 cut(s) 22, 142, 154, 160, 235
SspDI GGCGCC 1 cut(s) 300
SspMI CTAG 3 cut(s) 29, 437, 524
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 296, 534
TaiI ACGT 2 cut(s) 174, 473
TaqI TCGA 4 cut(s) 111, 249, 261, 459
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TseI GCWGC 1 cut(s) 311
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 499
XbaI TCTAGA 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 3 cut(s) 29, 437, 524
ZraI GACGTC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.