Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002663

Physical Location & Seq

Genomic Coordinates Forward (+)

21284019 .. 21284650

Gene Structure 632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G252100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCTCACATTCTCAAACCTATAATGGAGGTTGAGGTCAAGCTTAGGCTCCCAGACGTCGCCGCCCACTGCAAAGTCACCACACTACTCGCGCCGTTCCACGTCAGCACACACCGTCAAGAGAATCTCTTCTTCGACGGCCCCAAAGCCGAGCTCTCGGCGCGCCGAGCCGCACTCCGCCTCCGCTTCTCGGACCGAGCCCCTCTGTGCGCCGTGACCCTCAAGGCGCGAGCCGTATTGGTCGACGGCGTCAGCCGAGTCGAGGAGGACGAGGAGGAGCTCGACCACTCGATCGGTCGAGCCGGCGCTGACCAGCCGGATAAGCTGATGTCGGCGGAGTCTAGGGTTTTGAGTAGGGTGAGAGAGGAATTTGGGGTTTTGGGGTTTGTGGGGTTGGGAGGGTTCAGGAATGTGAGGGATGTGTATGATTGGAAAGGCTTGAAATTAGAGGTGGATGAGACAAAGTATGAGTTTGGTACTTGTTATGAGATTGAGTGTGAGAGTGCAGACCCTGAAGGGGTCAAGGAGGTGCTTGAGGGCTTCTTGAAGGAAAATGGGGTTCAGTATTCCTACTCGGAAACATCAAAGTTTGCGATTTTTCGGGCTGGCAAGCTGCCCCTTAGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYTH

Protein Analysis

210

Amino Acids

23.42

Weight (kDa)

5.41

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002663)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11890 AT2G11890
fragaria_vesca	FvH4_6g29260 FvH4_7g01830
malus_domestica	MD02G1018700.v1.1 MD15G1162700.v1.1 MD17G1216500.v1.1
prunus_persica	Prupe.3G092500_v2.0.a1 Prupe.7G252100_v2.0.a1
pyrus_communis	pycom15g14630
rosa_chinensis	RchiOBHm_Chr2g0087111 RchiOBHm_Chr2g0134431 RchiOBHm_Chr7g0219721
rosa_multiflora	Rmu_co8243769.1_g000001 Rmu_sc0000902.1_g000016 Rmu_sc0003367.1_g000001 Rmu_sc0005464.1_g000008 Rmu_sc0005571.1_g000033 Rmu_ssc0000239.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153790 Rroxscaffold_2G00153870 Rroxscaffold_3G00239900
rosa_rugosa	Rorug01G0472600 Rorug02G0317100 Rorug07G0187000
rosa_samantha	Rh2AG025800 Rh2AG369700 Rh2BG025600 Rh2BG375600 Rh2CG026100 Rh2CG353100 Rh2DG026000 Rh2DG392700 Rh7AG331000 Rh7BG320800 Rh7CG348400 Rh7DG326500
rosa_wichuraiana	Rw2G002060 Rw2G030110 Rw7G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	3 cut(s)	92, 163, 229
AciI	CCGC	5 cut(s)	63, 171, 178, 184, 335
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	534
AcyI	GRCGYC	2 cut(s)	57, 249
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	3 cut(s)	190, 262, 517
AgsI	TTSAA	2 cut(s)	442, 547
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	5 cut(s)	43, 154, 280, 325, 613
AluI	AGCT	5 cut(s)	43, 154, 280, 325, 613
Alw21I	GWGCWC	2 cut(s)	156, 282
Alw26I	GTCTC	2 cut(s)	9, 452
AlwNI	CAGNNNCTG	1 cut(s)	512
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	1 cut(s)	368
AscI	GGCGCGCC	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	6 cut(s)	94, 163, 165, 212, 229, 308
AspS9I	GGNCC	2 cut(s)	140, 193
AsuHPI	GGTGA	2 cut(s)	70, 370
AvaII	GGWCC	1 cut(s)	193
BanII	GRGCYC	3 cut(s)	156, 202, 282
Bbv12I	GWGCWC	2 cut(s)	156, 282
BbvI	GCAGC	1 cut(s)	600
BceAI	ACGGC	5 cut(s)	79, 154, 197, 218, 262
BcoDI	GTCTC	2 cut(s)	9, 452
BfaI	CTAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	309
BisI	GCNGC	3 cut(s)	63, 171, 614
BlsI	GCNGC	3 cut(s)	64, 172, 615
Bme18I	GGWCC	1 cut(s)	193
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	140, 193
BmiI	GGNNCC	2 cut(s)	50, 142
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bpu10I	CCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	206, 554
BsaHI	GRCGYC	2 cut(s)	57, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 262, 517
Bse118I	RCCGGY	1 cut(s)	302
BseGI	GGATG	2 cut(s)	424, 460
BseLI	CCNNNNNNNGG	3 cut(s)	190, 262, 517
BsePI	GCGCGC	1 cut(s)	161
BseRI	GAGGAG	3 cut(s)	278, 287, 290
BseXI	GCAGC	1 cut(s)	600
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	3 cut(s)	92, 163, 229
Bsh1285I	CGRYCG	2 cut(s)	294, 298
BshFI	GGCC	1 cut(s)	141
BsiEI	CGRYCG	2 cut(s)	294, 298
BsiHKAI	GWGCWC	2 cut(s)	156, 282
BsiSI	CCGG	2 cut(s)	303, 317
BslI	CCNNNNNNNGG	3 cut(s)	190, 262, 517
BsmAI	GTCTC	2 cut(s)	9, 452
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	3 cut(s)	156, 202, 282
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	5 cut(s)	63, 171, 178, 184, 335
BspANI	GGCC	1 cut(s)	141
BspFNI	CGCG	3 cut(s)	92, 163, 229
BspLI	GGNNCC	2 cut(s)	50, 142
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssHII	GCGCGC	1 cut(s)	161
BssMI	GATC	1 cut(s)	291
BssNI	GRCGYC	2 cut(s)	57, 249
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	2 cut(s)	57, 249
BstC8I	GCNNGC	5 cut(s)	163, 231, 304, 607, 611
BstDEI	CTNAG	2 cut(s)	44, 620
BstF5I	GGATG	2 cut(s)	424, 460
BstFNI	CGCG	3 cut(s)	92, 163, 229
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	6 cut(s)	94, 163, 165, 212, 229, 308
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	9, 452
BstMBI	GATC	1 cut(s)	291
BstMCI	CGRYCG	2 cut(s)	294, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 167, 322
BstUI	CGCG	3 cut(s)	92, 163, 229
BstV1I	GCAGC	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	424, 460
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	5 cut(s)	163, 231, 304, 607, 611
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	6 cut(s)	94, 163, 165, 212, 229, 308
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	140, 193
CpoI	CGGWCCG	1 cut(s)	193
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	477
CspI	CGGWCCG	1 cut(s)	193
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	2 cut(s)	44, 620
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EciI	GGCGGA	2 cut(s)	167, 350
Ecl136II	GAGCTC	2 cut(s)	154, 280
Eco24I	GRGCYC	3 cut(s)	156, 202, 282
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	2 cut(s)	154, 280
Eco57I	CTGAAG	1 cut(s)	534
EcoICRI	GAGCTC	2 cut(s)	154, 280
EcoT38I	GRGCYC	3 cut(s)	156, 202, 282
FaiI	YATR	4 cut(s)	23, 426, 468, 486
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	63, 171, 614
FokI	GGATG	2 cut(s)	431, 467
FriOI	GRGCYC	3 cut(s)	156, 202, 282
Fsp4HI	GCNGC	3 cut(s)	63, 171, 614
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	6 cut(s)	93, 162, 164, 211, 228, 307
GluI	GCNGC	3 cut(s)	63, 171, 614
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	2 cut(s)	303, 317
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	6 cut(s)	94, 163, 165, 212, 229, 308
Hin1I	GRCGYC	2 cut(s)	57, 249
Hin6I	GCGC	6 cut(s)	92, 161, 163, 210, 227, 306
HinP1I	GCGC	6 cut(s)	92, 161, 163, 210, 227, 306
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	124, 258, 338
HpaII	CCGG	2 cut(s)	303, 317
HphI	GGTGA	2 cut(s)	70, 370
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	193, 577
Hpy188III	TCNNGA	3 cut(s)	119, 406, 544
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	3 cut(s)	62, 140, 248
HpyAV	CCTTC	2 cut(s)	509, 541
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	2 cut(s)	57, 102
HpyCH4V	TGCA	2 cut(s)	72, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 167, 322
HpyF3I	CTNAG	2 cut(s)	44, 620
HpySE526I	ACGT	2 cut(s)	57, 102
Hsp92I	GRCGYC	2 cut(s)	57, 249
HspAI	GCGC	6 cut(s)	92, 161, 163, 210, 227, 306
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	54, 277
LpnPI	CCDG	7 cut(s)	66, 316, 326, 330, 391, 525, 591
Lsp1109I	GCAGC	1 cut(s)	600
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	57, 102
MaeIII	GTNAC	2 cut(s)	76, 214
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	2 cut(s)	121, 124
MhlI	GDGCHC	3 cut(s)	156, 202, 282
MluCI	AATT	2 cut(s)	368, 443
MlyI	GAGTC	2 cut(s)	267, 347
MroNI	GCCGGC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	128
MspI	CCGG	2 cut(s)	303, 317
MvnI	CGCG	3 cut(s)	92, 163, 229
MwoI	GCNNNNNNNGC	3 cut(s)	160, 167, 322
NaeI	GCCGGC	1 cut(s)	304
NdeII	GATC	1 cut(s)	291
NgoMIV	GCCGGC	1 cut(s)	302
NlaIV	GGNNCC	2 cut(s)	50, 142
NmeAIII	GCCGAG	4 cut(s)	137, 175, 191, 281
NmuCI	GTSAC	2 cut(s)	76, 214
PalAI	GGCGCGCC	1 cut(s)	161
PauI	GCGCGC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	124
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	3 cut(s)	64, 172, 615
Ple19I	CGATCG	1 cut(s)	294
PleI	GAGTC	2 cut(s)	266, 346
PpsI	GAGTC	2 cut(s)	266, 346
Psp124BI	GAGCTC	2 cut(s)	156, 282
PspN4I	GGNNCC	2 cut(s)	50, 142
PspPI	GGNCC	2 cut(s)	140, 193
PstNI	CAGNNNCTG	1 cut(s)	512
PsyI	GACNNNGTC	1 cut(s)	248
PteI	GCGCGC	1 cut(s)	161
PvuI	CGATCG	1 cut(s)	294
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
Rsr2I	CGGWCCG	1 cut(s)	193
RsrII	CGGWCCG	1 cut(s)	193
SacI	GAGCTC	2 cut(s)	156, 282
SalI	GTCGAC	1 cut(s)	242
SatI	GCNGC	3 cut(s)	63, 171, 614
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	140, 193
SchI	GAGTC	2 cut(s)	267, 347
SduI	GDGCHC	3 cut(s)	156, 202, 282
SgsI	GGCGCGCC	1 cut(s)	161
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	2 cut(s)	221, 533
SmoI	CTYRAG	2 cut(s)	221, 533
Sse9I	AATT	2 cut(s)	368, 443
SsiI	CCGC	5 cut(s)	63, 171, 178, 184, 335
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	2 cut(s)	156, 282
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	2 cut(s)	60, 105
TaqI	TCGA	6 cut(s)	135, 243, 261, 282, 290, 298
TaqII	GACCGA	2 cut(s)	210, 284
TasI	AATT	2 cut(s)	368, 443
TauI	GCSGC	2 cut(s)	65, 173
TfiI	GAWTC	1 cut(s)	124
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	2 cut(s)	76, 214
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	2 cut(s)	76, 214
TspRI	CASTG	1 cut(s)	74
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.